Information report for scaffold_800925.1
Gene Details
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Functional Annotation
- Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.
Homologous
- Brassica napus: BnaC09G0461700ZS, BnaA10G0174400ZS
- Brassica oleracea: Bo9g151990
- Brassica rapa: Bra002293
- Gossypium hirsutum: Gohir.D05G051550, Gohir.A05G049800
- Juglans regia: Jr06_20160, Jr06_20150
- Oryza sativa: SHO1;OsDCL4
- Populus trichocarpa: POPTR_006G188800v3
- Prunus avium: Pav_sc0000311.1_g630.1.mk
- Prunus persica: PRUPE_7G252800
- Solanum lycopersicum: Solyc07g005030.3
Sequences
gDNA Sequence
- >scaffold_800925.1
TAGATTACTTATTGTTTTGATGGTGAATCGTTTGGCAACAAAAGTAGATATTATTGGATTTGTGATTGTGACACTAATGGTGGATTCTGTGACAACTAAGATGAAGCTCATCATCCTTACGCGTTCGGGACCGAAAAATGTAGCTTCTCTTAGTTGGAGAGACCTCATCAGCTCCAGTTGGTAAGTGCTCTGTTTTTTTCCTAAAGAGATTAGTTTGTTCTTTGATTTTGCAAATTTTAAAGTGAGTTTGGATCTCTCATCAACTTAAATATGGAGAACGACCATTGCAGCAAAACCCTGTTTTTCTTCTTTGGATCTAAAAGGATCGCCAAAATTGATTTTTTGGTGAAGTTTGAGCTGTTGTTTTAGTCATTTCTCTTAATTACAGAGACCTTTTCCTTAATAGTAATCTCCGACATTTCATGTTGTTTTTAGGAGAAAGTTATGTTTTTTTTTTTTTAAGAATCCATATGTAGCTAAGTTGGGTCATGTTATATTATTGCTTCTAACGACATGATCTACTTAGCCTTATTATGTCTTCTCATTGTTTAGCTCTAATGATTGCTACTCAATTCTTCCTTGATTAAGACCAATGAACAATCAAAACTTTGCAAAGCATTATGCTTAATTAACCTTATATGGTGTCTGGAGCTAATCGTGTGATGTGTAGTATCACGGAGAGGTTACTATGATAACTTTCTATTTCACAGAATCATCAAGGTCTGCAATCCTATTTTCCAGTTTACTTTTCGTTTGTACTGAGATCAGCACCTGTGATGAAGTTCTAAGGAAATTGTTGCATTTCTATTGATTTGTTTCAGGATTTCATTGTGCAAGGTGGAGATCCTACAGGAACTTGAAAAGGTGGTGAATCCATGGATGTGTATATTTGGGAACTGGTTGTGGAAAGACTCACAGCTCAGTGATGGTTATATATGAGCTCGGTCATTTGGTTCTTAGTCCAAAGAAAAGTGTTTGTATATTTCTTGCTCCCACCGTGGCTTTGGTGAACAGGTGAAAGATTATTCGTCTTGATTATGCATCGGTGTTTACTTGAGCTAATTTATTGCGGATTGATTAGTTTTTTTTCTTCAAGTTCTAACTGTCTTGAGTTTGTTGTTGTTTACAGCAAGCCAAGGTCATAGCTGAGTCTATCAACTTCAAAGTTACGGTACATTGTGGAGGCAAGAGAATTATGATATAGCTAAGCTCTGATCAAGTTGTATTTCGTGGGGAGACAATCGACCTCTGATTATTTAGCACCATTGTGGAGTGACTAAATTCATTGCAAACAAATTTACCTTCTTACTTTACGTTTGATTACTCAAGGTTGAAAGCCTTGGTAGTTTGCTTTCATGGTTATTTTTTTATCCTTCTTAAAACAATTGAATCTTAAAACAGGAATTTTCAAAATTTCAAATGCAAGATTGATCAAATTTCTGTAGACAACAACTTCCATCACTATTCTAACCGACTAACATAATTTAATAACCCAGAGGTTTTAGTCAAATATAGTGCTTCACTTATTTTCTTTTACAGCGGTGTAATCAAAATTCACAAACTTATGTGGCTTATGGTTTGTTCAAACACGTAAGATTTTACTAACAATCTTTTTGAAATTTGTTTCATGCAATCATCAACTCTATGAACCGTTGCATATTGCATTATTCATTTAAGAAAGAGAATAAAGAAATATAGTTACTACGTGAAAACGTCCAAGACAATACTAATAATCAATTCCAAGGTTTTCATGGTATCAGATTCAAACGACAGCGGATATGGAAAAGGAGCAAGAGAGAATAGAGATTTGGTATGTGTTAGAAAGATTGCACAACCGATGTGAGAAGCAAAGGAGCTGTTCAGCTGTTGGTGTGGGGTTAGTAAGATTAGGCCAATTCTGTATATGTAGCAAGGTCTTCAATTTTCAAAATTCTTAAACCTTTTCGGCTAAAAAAAGACCAATGGTCTTTATGATCGCGTTTCCAATGGGAACTTCAACGCGGTAATACCATACGCAGCTTGATGTTGTGAGTCACAAGACTCACAAAGATTGGATATGAACAAATGACCAAGTTTAGATGTTAAAAAAGAAAGGACAAATATATTAGATGTGTTACATTACATTTGTGAAATCCAACATATCTATATATTGGTGATTTTTTTTTATGTCTTTGATATAGTCCAAAAAAGAGCACTAATAAACTTTTAACAAAATACTACCTCTATTATATTATGTAAATTGTTTTAGGAGTTTTTTTAAAATGTCTCATTTTATTCGTTTTTTTTTTGCAAATTCCTATCCAGAATGTAGAAGTTTCTATAAATTTATTTTTTGCAGTATCTTTTGTGATTGGTTAAAATAATTTTAATGAATTATTAAATAATATAATTCTTTTATAATAAAAGTAAATACATTTATGATTTCTTAATCTATGCATTTTTAACGAGACCAATATACATATTGGAATAGATGAAGTAATATTTAAAGTTCTGGAACATTAAGAAACCTTTTTGATTAAAAAGGAATACATGGAAGAAAGGATACTGTCAGACCCTGAGGGCCCTGAAATTTATTTCACACTTTTTCAAATTAAACCATTCACAACTCAGACACCTGCAGGACGGTAGCTAATTCATAGGTTACAACGAAGTTATTAGGATAAAAGTAAAGTAGTTTTAGAGTTGGATGCCACCAAATGATTTATTTGGCATTTGATTTCCTATTCGTATGTGTTTTTCTGATAAATCTCATGTAAAATCATCTTTTTTTTTGTGTGTTGCAGATGAAATTGCTCTCAAATTTGAAGAATCCTTATATTGGACATCAGTGTCCATTTTCTATGAAAAAATTTATAATGATTTTCATCAGTTTTCAAAGATTTCTTTTTCTTTTCACAAGACAATAACGCCTGCATTTTCACTGCTTACTGTGAGGGAGGTAACATGTCAGTTATTCCTTGGACTATGTATCTATGAATTATAATAATCTTTCTCTATGGGGCTCAGCCTAAAGCAAAATCCACGTCTTGGACTACTGAATCATACAAATATTTTTTTTCTCCAAATCAGGGCTAATGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAGCTAAGGTAGTGCATATATTTTTTCCTATT
CDS Sequence
- >scaffold_800925.1
ATGGTGAATCGTTTGGCAACAAAAGTAGATATTATTGGATTTGTGATTGTGACACTAATGGTGGATTCTGTGACAACTAAGATGAAGCTCATCATCCTTACGCGTTCGGGACCGAAAAATGTAGCTTCTCTTAGTTGGAGAGACCTCATCAGCTCCAGTTGCTCAGTGATGGTTATATATGAGCTCGGTCATTTGGTTCTTAGTCCAAAGAAAAGTGTTTGTATATTTCTTGCTCCCACCGTGGCTTTGGTGAACAGGGCTAATGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAGCTAAGGTAG
Protein Sequence
- >scaffold_800925.1
MVNRLATKVDIIGFVIVTLMVDSVTTKMKLIILTRSGPKNVASLSWRDLISSSCSVMVIYELGHLVLSPKKSVCIFLAPTVALVNRANAIKKARGKLFPELR