Information report for scaffold_602544.1
Gene Details
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Functional Annotation
- Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
Homologous
- Actinidia chinensis: CEY00_Acc02581, CEY00_Acc01304
- Brassica napus: BnaA06G0329000ZS, BnaC07G0364800ZS, BnaA02G0385300ZS, BnaC02G0515600ZS, BnaC09G0057600ZS, BnaA09G0067500ZS
- Brassica oleracea: Bo7g096790, Bo9g012630
- Brassica rapa: Bra009768, Bra029407, Bra036517
- Gossypium hirsutum: Gohir.D04G000100, Gohir.D04G000180, Gohir.D11G016300, Gohir.A11G016500
Gene Resources
- Pfam: PF06203 PF00072
- UniProt: D7M353
- RefSeq: XP_002874200.1
- EMBL: GL348718
- AlphaFoldDB: D7M353
- InterPro: IPR001789 , IPR010402 , IPR011006 , IPR045279
- PANTHER: PTHR43874 , PTHR43874:SF95
- SUPFAM: SSF52172
- PROSITE: PS50110 , PS51017
- Gene3D: 3.40.50.2300
- eggNOG: KOG1601
- STRING: 81972.D7M353
- HOGENOM: CLU_015512_2_0_1
Sequences
gDNA Sequence
- >scaffold_602544.1
AATATATCAATTTGTTGGATCACTGATGAGCTTGTGTTGATTGGACTTGACGAACGAATTGGCCTTTGATTCGCGGCCGTTGCTCTGCCAGTTTCTTCCGGCTCTCATAACGAACCTGTAAAGTCATTCAAAGGTTCCTTTAGTATCATTCCATTATGAGTTCATGTCATCTATGTGATGGAAACATCGAAGTTAGTTTTTACCTTTTTCTCAAAACATCTGTCCTTACGCTTCATCCGGAATTTGGTTAAAGCAGCTTCCCGTTGAAGAGATTGCTGAAATTTCCCGACAGACGATGAATACCCATCTTCGTTCTTCTTCTCAATAAGCTGATCAATGTGATTGCCTATTGCACTATGTTCGGTTGCAGAAGAGACGTATCTCCTCTCCTCTACATCCATGGAACCATCCCGGTCTTGGAAACCCTCGGGTTTACCATTGAATGGGTGAAACATGGAACTGTATTCATGTGGGCTAACGGAGCTAGGGGTTGGGGAGACTGAAGCAGGAGCCATTGCAGATGCATAAGCTGTGTTGGGACCCCTGAACTGTATATTATTGATGGGGGTTGGCGTTGGGTAAGAACCCTGTCCTGGCCAAGAATTCATCTGATTACTAAACGGTGGACCCGGTGAGTCAGCTCCAGTGTAAAAGCTGGTGTCGTTTCTTCTTGGAGCACTTGGAGGTGGTTCAGATGTATTGTATTGGTTGATTAGCACAATGTTATCATCTTGACTTGCCGCAAAATTCTTTCTTTGATCAGGAACCACCGGGGAGGCCGAACATTGTGTCTGCAATGGCCTGTGAACGTACCTGAAACAAGAACATAGCACACACAATCAGCAGAAAGAACGACAAATATTGAAAGATTAATAGAAAGAGGAATTCAGAAATCAGACAACTCACCGTGTGAAAGCTGACGCACTAGAAGGATGAAGAGAAGGCCGGTCTCCAGAAGATTGGTTCTCGGAAGGGATAGGTCTACTCAGAGAGAGATCAAGCTCTATCCGAGATTCGTATTGGGCAGCACTTTCTTCTCTGTTACGTTGTCCAGTTCTTCTAAACGATGCTCCCATCAAGTCAATGGCCTTTTTCGATGAATCTATAGAATTTACAAAAACATGTAGGTCAATCAATGATTCTGATGAACTTTTTAAGAGTCAGATAGCTTGCCAAAAAAAAATAAAAAAAGCTTGCTTACTCTGCATCTCATTTGCTAGAAGCCGTGTCTCATTGAACTGAGACTTTGCGCACTCCATCTGTACTGCATCTCTCGCGTTGACCTCCACGTCTGCGCTCTCGCCTTCCATCTCTGGTCTTGTACACGAGCTCTACAAGCGCAAAAAATAACTAAAAGTTTAGAAACAAACACTAAGAACCTGAACCAAATTCACATGTGGAGAATCCACCATTGAAAAAAATAGTCCATAATCAGAAACTAACCTGAGCATCACCACCATTCCCAATTACGACATGCTCTTCTCTCTTTCCGTTCGAATTGTTTGCAGAGGCACCCTCGGGTTTCTGCTGTCTCTCATCCAATGGAAAGCTATCAGGAGCGAGTGACTGTAAAGATGATCAAAAACAAAAACAAACAAAACAAATCTGAGAACTCAATCATCTTTTCAAGACAACGAAATTTCCCAGAACTTATATAAGAACGGGTTCAAGTTGTCGATTGCTCACGACACATCAAGCTTAAAAAAAGATGGATATGAAACATACAGTTTGTCTTCTCCAGACATGTTGCCAAAGATTTCTCAGCTCATTCCTCCTCAACGGCTTAACAAGATAATCAGCCGCACCTTTCAACATACACTTATACACAGTATTCACCGAGTCCTGTGTCGACATCACTGAAAAAAAACAATACAAGAAGGCGATAATGAGCCAAAAATCATTTCAAAACGATGGAAAAAAAAAAGATGTAAATATCACCGTACTTATAACAGGAATGTTCTTGCAGATATCATGCTCCATGATAAGTGTTAGCAGAGCGTAACCAGAGATCGAAGGCAGATCAACCTCTGTTAGTATCAAATCAACGCTTTCGGGTTTTCCTTTAAGCATCTCCCAAGCCTTTAAGCCATCAGGTACAGCAGCGACTGATAATACACACAAAAACCAACCACATTAATAAAACCTTTAAGCTTGTTGTAGAAATGAAGTGTTGATGAAGACTCAAAAGATTTATATCTGAACACAAAACTCAGATTGACCCCAAAAAAACATGGTTCTTGATCTATTCTAGGAAAACTCTTTCACATGCTAAAAATAGCAACAATTTCGTTACTTAGACAACAATCTTTGTTCGTGTCCGAATAACATCAGATGCAAAACCGACAAAAACCGTTGACTTTGAATTGTAACATTCCAAAGCATAATTTAGCCGCACGCAAATCAGATTCACATCATTCACAGTTCTCAGATTCCATGAAAATTTTCCGATGTTCGAACAAAACCATAATCTCAGGCAATGAAACCAGAAACTGACCTCTGTAACTACATTTCCTGAGAAGAGCAGAGATAATCTGTCTAGTCGAATCATCAGCTTCAACGAGCAAAACTCTTAGCGCGATTTTCGGGAGAAATCTCTCCCACTTCACCAAACCATCGCCGCCGCCATCAACGGCGTCTTTCTTCCTCATCTTCCGCCGTGATGACTTTCCTCCGCTAGCCTCAGCTGCTTTCACCACCGTAACTTCAACAACTTCCTCGCTACTCATTATCACAACACAAACACTTG
CDS Sequence
- >scaffold_602544.1
ATGAGTAGCGAGGAAGTTGTTGAAGTTACGGTGGTGAAAGCAGCTGAGGCTAGCGGAGGAAAGTCATCACGGCGGAAGATGAGGAAGAAAGACGCCGTTGATGGCGGCGGCGATGGTTTGGTGAAGTGGGAGAGATTTCTCCCGAAAATCGCGCTAAGAGTTTTGCTCGTTGAAGCTGATGATTCGACTAGACAGATTATCTCTGCTCTTCTCAGGAAATGTAGTTACAGAGTCGCTGCTGTACCTGATGGCTTAAAGGCTTGGGAGATGCTTAAAGGAAAACCCGAAAGCGTTGATTTGATACTAACAGAGGTTGATCTGCCTTCGATCTCTGGTTACGCTCTGCTAACACTTATCATGGAGCATGATATCTGCAAGAACATTCCTGTTATAAGTACGGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATTATCTTGTTAAGCCGTTGAGGAGGAATGAGCTGAGAAATCTTTGGCAACATGTCTGGAGAAGACAAACTTCACTCGCTCCTGATAGCTTTCCATTGGATGAGAGACAGCAGAAACCCGAGGGTGCCTCTGCAAACAATTCGAACGGAAAGAGAGAAGAGCATGTCGTAATTGGGAATGGTGGTGATGCTCAGAGCTCGTGTACAAGACCAGAGATGGAAGGCGAGAGCGCAGACGTGGAGGTCAACGCGAGAGATGCAGTACAGATGGAGTGCGCAAAGTCTCAGTTCAATGAGACACGGCTTCTAGCAAATGAGATGCAGAATTCATCGAAAAAGGCCATTGACTTGATGGGAGCATCGTTTAGAAGAACTGGACAACGTAACAGAGAAGAAAGTGCTGCCCAATACGAATCTCGGATAGAGCTTGATCTCTCTCTGAGTAGACCTATCCCTTCCGAGAACCAATCTTCTGGAGACCGGCCTTCTCTTCATCCTTCTAGTGCGTCAGCTTTCACACGGTACGTTCACAGGCCATTGCAGACACAATGTTCGGCCTCCCCGGTGGTTCCTGATCAAAGAAAGAATTTTGCGGCAAGTCAAGATGATAACATTGTGCTAATCAACCAATACAATACATCTGAACCACCTCCAAGTGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCGGGTCCACCGTTTAGTAATCAGATGAATTCTTGGCCAGGACAGGGTTCTTACCCAACGCCAACCCCCATCAATAATATACAGTTCAGGGGTCCCAACACAGCTTATGCATCTGCAATGGCTCCTGCTTCAGTCTCCCCAACCCCTAGCTCCGTTAGCCCACATGAATACAGTTCCATGTTTCACCCATTCAATGGTAAACCCGAGGGTTTCCAAGACCGGGATGGTTCCATGGATGTAGAGGAGAGGAGATACGTCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCTTATTGAGAAGAAGAACGAAGATGGGTATTCATCGTCTGTCGGGAAATTTCAGCAATCTCTTCAACGGGAAGCTGCTTTAACCAAATTCCGGATGAAGCGTAAGGACAGATGTTTTGAGAAAAAGGTTCGTTATGAGAGCCGGAAGAAACTGGCAGAGCAACGGCCGCGAATCAAAGGCCAATTCGTTCGTCAAGTCCAATCAACACAAGCTCATCAGTGA
Protein Sequence
- >scaffold_602544.1
MSSEEVVEVTVVKAAEASGGKSSRRKMRKKDAVDGGGDGLVKWERFLPKIALRVLLVEADDSTRQIISALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVISTDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRRQTSLAPDSFPLDERQQKPEGASANNSNGKREEHVVIGNGGDAQSSCTRPEMEGESADVEVNARDAVQMECAKSQFNETRLLANEMQNSSKKAIDLMGASFRRTGQRNREESAAQYESRIELDLSLSRPIPSENQSSGDRPSLHPSSASAFTRYVHRPLQTQCSASPVVPDQRKNFAASQDDNIVLINQYNTSEPPPSAPRRNDTSFYTGADSPGPPFSNQMNSWPGQGSYPTPTPINNIQFRGPNTAYASAMAPASVSPTPSSVSPHEYSSMFHPFNGKPEGFQDRDGSMDVEERRYVSSATEHSAIGNHIDQLIEKKNEDGYSSSVGKFQQSLQREAALTKFRMKRKDRCFEKKVRYESRKKLAEQRPRIKGQFVRQVQSTQAHQ