Information report for scaffold_403655.1
Gene Details
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Functional Annotation
- Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Homologous
- Arabidopsis thaliana: AT2G46830.1
- Brassica napus: GSBRNA2T00132937001, BnaA05G0011000ZS, BnaC04G0011300ZS, GSBRNA2T00073198001
- Brassica oleracea: XP_013637507.1, XP_013637506.1, XP_013637509.1, XP_013637508.1, Bo4g006930
- Brassica rapa: XP_009142593.1, XP_009142594.1, Bra004503
Gene Resources
- Pfam: PF00249
- UniProt: D7LF92
- EMBL: GL348716 , KP022195 , KP022196 , KP022197 , KP022198 , KP022199 , KP022200 , KP022201 , KP022203 , KP022204 , KP022205 , KP022206 , KP022208 , KP022209 , KP022210 , KP022211 , KP022212 , KP022213 , KP022214 , KP022216 , KP022217 , KP022218 , KP022219 , KP022220 , KP022221 , KP022222 , KP022223 , KP022224 , KP022225 , KP022226
- AlphaFoldDB: D7LF92
- KEGG: aly:9316335
- InterPro: IPR001005 , IPR006447 , IPR009057 , IPR017884 , IPR017930
- PANTHER: PTHR12802 , PTHR12802:SF177
- SUPFAM: SSF46689
- PROSITE: PS50090 , PS51293 , PS51294
- Gene3D: 1.10.10.60
- OrthoDB: D7LF92
- CDD: cd00167
- eggNOG: KOG0724
- STRING: 81972.D7LF92
- HOGENOM: CLU_025358_0_0_1
Sequences
gDNA Sequence
- >scaffold_403655.1
GCTTTTGAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGGTAATTAAATTAAATTTTAGGGGAAAATGATTGTTTTAGGTGAAAAAGATTGAGAATTTAGTGAAACTTGATATAGACTCGGAAGCCATATACGATAACGAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCATTGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGGTTTATTTTTTATTTTCTTTATATATTTTTGTGTTTGCAGAGGTTTTTATTGTTTTGTTTCTTCTTCAAACTGATTTGCTTTTGTTTTTTTTTTTTTTTTTTTTCAATTGGACAGAACATGTAGCAACAAAAACTGCTGTTCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAAAATCGGTTAATTTTGAACTGCTGTTCTCATCTTCATTGGCTTAATGGTTAAGACTAATTGAAGCCAGACAAGTTTTCTGCTTCGTTTGCTTTAGTCAGGAGATAGATTACGTATTAGAGTTTAGTAATGAGCAAGAAGTCATAGTAGGAGAAATTATGAGAGTGTAATCGTTTTGTTTGGTTTATACCTATATGTTGTTAATCCACAAACATGTACATAGCATCTTCAGAAGAATGTTAGTTTCTCTTGAAAGTCAGGGGAGATCAACTTGTGCCTTTTTGAAAGTTTTATCTACTCTGAGGTAGTGGTCTAGTCCTAGAAATTTATGTCCCACAAGGTGAACCATTTGAATATGTTTATTGTTCCTTGTGATAAGCCATAGAGGTAAACCATTTTTGATTTTCTAGTTTTGTCATTTAAACTTGTTAATTTCATTAGATTTTTGTTTCTTTGCGTTTGTCTAGAGGGTAAAAAGATTACTCTCATCCTCTCAGGTAGAGAAAGAGGCTGAATCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCCTAAGCGTAAACCAAGCAATCCTTATCCTAGAAAGACGGGAAGTGGAAGTATCCCGATGTTAAAAGCGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTGAGGTGATTTTCATGGTCAATGACATCTTTTTGTAGTGTGTCATATTGCTCCTCATGTTATTAATGCAGATTGTGTGCTTTGTTTTTAGATGGCTAATGAAGATCGACAACAATCAAAGCCTGAAGAGAATAATAATCTGCAGGAAGACAACTGTTCAGATTGTTTCACTCATCAGTACCTCTCTGCTGCATCCTCCATGAATAAAAGTTCTATAGAGACATCAAACGCAAGCACTTTCCGGGAGTTCTTGCCTTCACGGGAAGAGGTAAAAAATCAATCTTTCATAGCTATTTGAGGTTTTAAGACGATTAGTACTTTTTATGAAAACTAAACTTGGGGGAATAACAGGGAAGTCAGAATAACAGGGTAAGAAAGGAGTCAAACTCAGAGAATTACTGTGATTTGAATGCAAAATCTCTGGAAACCGATAATGAGCAAGGACCTCAGACTTATCCGATGCGTATCCCTGTGCTAATGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAGATAGTCATCCCCACATTGTTGCAGGAGATTATCAGTCGCTTCCTAATCATATAATGTCAACCCTTTTACAAACACCGGCTCTCTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTCCCGATTCTAGTGGTAGCTCACCAGTTCAAGGGAACTCACCTCCGAATCTGGCTGCCATGGCTGCAGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGATTGTTACCTTTATGTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCCGGTGATGTAGAGTACACAAAAACAAGCACTTTACAGCATGTTTCTGCGCAGAGCCGAGAGCAAGAACACTCTGAGGCATCAAAGGGTCGATCTTCATTGGTCTCAGAGGAGATTGAAAAGAAGAGTAAACCAGATTGTCATGAGCATCCTTCTGTAACACCTGAGAGTGATGCAAAGGGTTCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCTTCGTGTGGCTCAAACACTCCCTCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAGAGGCAAGAGGATGGCACCAAGGGTGAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCAATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCTTGGAAGTCTGTGTCTGACGAGGTACTTTACTTGGACTAAAGATTAACTTCCTTTATTTCAAATCATTTTCTCATACTAGTCTGTTGAAACTTGATATTGTACATTCAGGGTCGAATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTACCGCAAAGCTTTACATATCGAGAAGAACACAGAGAGGAGGAACAGCAACAACAAGAAAGATATCCAATGGCACTTGATCTTAACTTCACAGCTCAGTTAACTCCAGTTGATGAGCAAGAGGAGAAGAGAAACACAGGATTTCTCGGAATCGGATTGGATGCTTCAAAGCTGATAAGTAGAGGAAGAACAGGTTTCAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACACCAATCCTATCATTCATGTGGAACAGAAAGACCCCAAACGGATGCGGTTGGAAACTCAAGCTTCGACATGAAACTCTATTTTCATCTCTTCTG
CDS Sequence
- >scaffold_403655.1
ATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAAGCCATATACGATAACGAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCATTGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGAACATGTAGCAACAAAAACTGCTGTTCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGCTGAATCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCCTAAGCGTAAACCAAGCAATCCTTATCCTAGAAAGACGGGAAGTGGAAGTATCCCGATGTTAAAAGCGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTGAGATGGCTAATGAAGATCGACAACAATCAAAGCCTGAAGAGAATAATAATCTGCAGGAAGACAACTGTTCAGATTGTTTCACTCATCAGTACCTCTCTGCTGCATCCTCCATGAATAAAAGTTCTATAGAGACATCAAACGCAAGCACTTTCCGGGAGTTCTTGCCTTCACGGGAAGAGGGAAGTCAGAATAACAGGGTAAGAAAGGAGTCAAACTCAGAGAATTACTGTGATTTGAATGCAAAATCTCTGGAAACCGATAATGAGCAAGGACCTCAGACTTATCCGATGCGTATCCCTGTGCTAATGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAGATAGTCATCCCCACATTGTTGCAGGAGATTATCAGTCGCTTCCTAATCATATAATGTCAACCCTTTTACAAACACCGGCTCTCTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTCCCGATTCTAGTGGTAGCTCACCAGTTCAAGGGAACTCACCTCCGAATCTGGCTGCCATGGCTGCAGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGATTGTTACCTTTATGTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCCGGTGATGTAGAGTACACAAAAACAAGCACTTTACAGCATGTTTCTGCGCAGAGCCGAGAGCAAGAACACTCTGAGGCATCAAAGGGTCGATCTTCATTGGTCTCAGAGGAGATTGAAAAGAAGAGTAAACCAGATTGTCATGAGCATCCTTCTGTAACACCTGAGAGTGATGCAAAGGGTTCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCTTCGTGTGGCTCAAACACTCCCTCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAGAGGCAAGAGGATGGCACCAAGGGTGAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCAATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCTTGGAAGTCTGTGTCTGACGAGGGTCGAATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTACCGCAAAGCTTTACATATCGAGAAGAACACAGAGAGGAGGAACAGCAACAACAAGAAAGATATCCAATGGCACTTGATCTTAACTTCACAGCTCAGTTAACTCCAGTTGATGAGCAAGAGGAGAAGAGAAACACAGGATTTCTCGGAATCGGATTGGATGCTTCAAAGCTGATAAGTAGAGGAAGAACAGGTTTCAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACACCAATCCTATCATTCATGTGGAACAGAAAGACCCCAAACGGATGCGGTTGGAAACTCAAGCTTCGACATGA
Protein Sequence
- >scaffold_403655.1
METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAESKGVAMGQALDIAIPPPRPKRKPSNPYPRKTGSGSIPMLKAGVNDGKESLGSEKVSHPEMANEDRQQSKPEENNNLQEDNCSDCFTHQYLSAASSMNKSSIETSNASTFREFLPSREEGSQNNRVRKESNSENYCDLNAKSLETDNEQGPQTYPMRIPVLMPLGSSITSSLSHPPSEPDSHPHIVAGDYQSLPNHIMSTLLQTPALYTAATFASSFWPPDSSGSSPVQGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSGDVEYTKTSTLQHVSAQSREQEHSEASKGRSSLVSEEIEKKSKPDCHEHPSVTPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTKGEVKEMNEDTNNPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQERYPMALDLNFTAQLTPVDEQEEKRNTGFLGIGLDASKLISRGRTGFKPYKRCSMEAKESRILNTNPIIHVEQKDPKRMRLETQAST