Information report for scaffold_401698.1
Gene Details
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Functional Annotation
- Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.
Homologous
- Brassica napus: BnaC03G0277800ZS, BnaA03G0235100ZS
- Brassica oleracea: Bo3g040620
- Brassica rapa: Bra000520
- Gossypium hirsutum: Gohir.D05G004300, Gohir.A05G003900
- Juglans regia: Jr06_16760, Jr06_16770
- Manihot esculenta: MANES_03G098800
- Nicotiana attenuata: A4A49_11085
- Solanum tuberosum: PGSC0003DMG400031043
Gene Resources
- Pfam: PF04042
- UniProt: D7LDM9
- RefSeq: XP_002881185.1
- EMBL: GL348716
- AlphaFoldDB: D7LDM9
- InterPro: IPR007185 , IPR016266
- PANTHER: PTHR12708 , PTHR12708:SF0
- eggNOG: KOG3818
- STRING: 81972.D7LDM9
- HOGENOM: CLU_010628_0_0_1
Sequences
gDNA Sequence
- >scaffold_401698.1
CTTTTGACTGAAAGGAGAATCACAGAGGAGAGAGTTCGATTTCTTGAGTGGAAGGCCGATAAGCTACAAAGGTGCTATCAGTTGAAAAGGAGCCTGGATTAAAACATGTTGCTCCCCCAAATTTGCATACCTTTTTGTCACTCTTGTCACCTAATACTATATGTATTCCAAACAATATCAACAAGTCAACAACAATCCTTTCTTGTTTTAAGGCGGGTTTCGCGTTTCCAAACTTGGTGGAATTGGATCTATAATAAGAAGATTTAAGAATGTACCGTGTAAGGAGTTGGATATAGTCGTAGACAGTGATCATAGTTCCAAATTATTGGTTGAAACAAGAGAGGTAGAGGACATAGATGGCTCTGATGAATTAATTTGGAGACAAGCTGAACCAACATGTACATTTCACAAGTTTCAGATTATTCGGAAAACTGTAAAATCAATAGTTGGGAAATTATTGAGAGGAGAGATGTGTTTACGTGTTCAAAGGGGTCATTAGTTTCTTCTGAGGAAGGTTTTAACAAGCGTGAACGGATCATCCGGTACCACAAGGTCTTGTCGGAAGAACACAATCTCCTGATTGTAGACTAGAACTCTCCATATGACTAAAAACCATAATGATGAACAATAGAGAGTACTTCACAAGCAGAATAGATAACTCACCTGCAAGGATTGCTTGAAAATATCGCATTGGGAATAACTTCTCGAAGCTCTTCGGTTGAATACTCTGGTAAACCGCATCTTGGCAAGACTGTCAAGGGACGTGTCGGATATAATGAGGCATGTTTCCTCATGGCGACCCTGGCTTTATTTATATGGTGATGGAGATTGTACCTGCGTCATCAGGACCTGGAATGAATAAAAACCGACTGTTTGCTTTTTAGCCTAGGACGGTTTCCAATCATTCTCCCAAGTTTACCAAATTGCTTCCTGAAAATGAAATGGATGCATGTCCTCAAGAATACATATAAGAATAGATTCTCGATCACATTTGAGGAGATTATAACTACAATGATCTCTTAAACCTTAGACTTGTATAAGAACCAAACAATAAGTTGCATGGGCGAGAACAGAAGTTTCCCATGAAAACACACAAAGTGGGCACTATCTCCACACTTTCAAAACCATCAAGAACCGTAATGCTCTTTAAGCCCAAAAGGAGGCATTATAACAAAGATTGAAGCTAAAGATACAGTAGTTAGTACTCCAGCTCACCTCTTCACCTTCCAGCCATATGACAAATGTGTCGTTCACCGCTTTTCTTTCCAGGTCTGCAAGTCTAATCTGTGATCAGAGGCAAAAAGTACATTTATTTATTTTCTGCTGTGACTTATTTATGTAAAAGGCATCAGACTGGAAATTTACAACTTTCTCAATCCAGAAAAACAAACGACGACTCAGGGATTACCATCTCATCTTTAGTTGGCCTGCCACTTCCAAAGAAGTAGTTTTCAGAATGTATACTTAGTGTTTTATCCCTGTCTTCTAAATGAGGAAATCCGCATGCAATCACCTTTACCAAATATGAGGGAAAAAAAAAGACTTTAGAAGAGGACGAGTTAGTCAAAATATGTTCACTAATTGAATTCTGATATTTGTGACAGGCCATCATCATTCCACTGATGGGAACATACATTTGTATATTCCATTATATTGAATCTATTCAAGAGTGTTTTGGGAGACTTGTGTACGTATTTTTAGTAACAGAGGAGACCATACACACGACTTAGTTCTATATTCCCACCTAACTCTAACATCTTAATAAATCAAGATGAACAACAATCGATTAAAAATCGTAGTTCCTATGAATGCACACTGAAGGATATTCTAGTTTACCTGAAAGATACCATTGTGCATTTCACCTTGTGCCAAAATGATAGTATTCTCTGAGAAAATTCCTGTGGTCATCTTGTACTGATTGTCATAGAAAAGTAGTCATAATGCAATTTTTTGGCTGTCCCTATATAACTCCAGATTGTCAATGGTACTAGTACCAAATAAGCATATTGCTTTGGACAAATCAATCTTTACACAAGCTGAAAGGTATTCAAGGTAGAAATGTCCATCTTCCAACTGTGATATCAAGCCCATCACCCATCTCTTACTCTTTCT
CDS Sequence
- >scaffold_401698.1
ATGGGCTTGATATCACAGTTGGAAGATGGACATTTCTACCTTGAATACCTTTCAGCTTGTGTAAAGATTGATTTGTCCAAAGCAATATGCTTATTTGGTACTAGTACCATTGACAATCTGGAGTTATATAGGGACAGCCAAAAAATTGTGATTGCATGCGGATTTCCTCATTTAGAAGACAGGGATAAAACACTAAGTATACATTCTGAAAACTACTTCTTTGGAAGTGGCAGGCCAACTAAAGATGAGATGATTAGACTTGCAGACCTGGAAAGAAAAGCGGTGAACGACACATTTGTCATATGGCTGGAAGGTGAAGAGAGCATTACGGTTCTTGATGGTTTTGAAAGTGTGGAGATAGTGCCCACTTTGTGTGTTTTCATGGGAAACTTCTGTTCTCGCCCATCCAGGGTCGCCATGAGGAAACATGCCTCATTATATCCGACACGTCCCTTGACAGTCTTGCCAAGATGCGGTTTACCAGAGTATTCAACCGAAGAGCTTCGAGAAGTTATTCCCAATGCGATATTTTCAAGCAATCCTTGCAGGAGATTGTGTTCTTCCGACAAGACCTTGTGGTACCGGATGATCCGTTCACGCTTGTTAAAACCTTCCTCAGAAGAAACTAATGACCCCTTTGAACACCTTGTCTCCAAATTAATTCATCAGAGCCATCTATGTCCTCTACCTCTCTTGTTTCAACCAATAATTTGGAACTATGATCACTGTCTACGACTATATCCAACTCCTTACACGTTTGGAAACGCGAAACCCGCCTTAAAACAAGAAAGGATTGTTGTTGACTTGTTGATATTGTTTGGAATACATATAGTATTAGGTGACAAGAGTGACAAAAAGGTATGCAAATTTGGGGGAGCAACATGTTTTAATCCAGGCTCCTTTTCAACTGATAGCACCTTTGTAGCTTATCGGCCTTCCACTCAAGAAATCGAACTCTCTCCTCTGTGA
Protein Sequence
- >scaffold_401698.1
MGLISQLEDGHFYLEYLSACVKIDLSKAICLFGTSTIDNLELYRDSQKIVIACGFPHLEDRDKTLSIHSENYFFGSGRPTKDEMIRLADLERKAVNDTFVIWLEGEESITVLDGFESVEIVPTLCVFMGNFCSRPSRVAMRKHASLYPTRPLTVLPRCGLPEYSTEELREVIPNAIFSSNPCRRLCSSDKTLWYRMIRSRLLKPSSEETNDPFEHLVSKLIHQSHLCPLPLLFQPIIWNYDHCLRLYPTPYTFGNAKPALKQERIVVDLLILFGIHIVLGDKSDKKVCKFGGATCFNPGSFSTDSTFVAYRPSTQEIELSPL