Information report for scaffold_300479.1
Gene Details
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Functional Annotation
- Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.
Homologous
- Actinidia chinensis: CEY00_Acc05725
- Arabidopsis thaliana: AT3G04680
- Brassica napus: BnaA03G0295700ZS, BnaC03G0354200ZS
- Brassica oleracea: Bo3g058530
- Brassica rapa: Bra001118
- Glycine max: Glyma.20G242900
- Gossypium hirsutum: Gohir.D04G050600, Gohir.A05G364100
- Juglans regia: Jr10_02550, Jr01_00620
- Manihot esculenta: MANES_17G021000
- Populus trichocarpa: POPTR_017G077200v3
- Rosa chinensis: RchiOBHm_Chr2g0169161
- Vitis vinifera: VIT_14s0066g02630
Gene Resources
- Pfam: PF06807 PF16573 PF16575
- UniProt: D7L2X0
- EMBL: GL348715
- AlphaFoldDB: D7L2X0
- KEGG: aly:9320524
- InterPro: IPR010655 , IPR027417 , IPR028606 , IPR032319 , IPR032324 , IPR038238 , IPR038239 , IPR045116
- PANTHER: PTHR12755 , PTHR12755:SF6
- SUPFAM: SSF52540
- Gene3D: 2.40.30.330 , 2.60.120.1030 , 3.40.50.300
- OrthoDB: D7L2X0
- eggNOG: KOG2749
- STRING: 81972.D7L2X0
- HOGENOM: CLU_018195_1_0_1
Sequences
gDNA Sequence
- >scaffold_300479.1
CCTCTCTTCTCTAAATAAATCATACTGACTCAAGCCATGTCAATGATCCAGCGACCAACAACTTGCTAGGTAATGTCCCAGGCGATGGTGCTAAATACGTTATCTTCTTCTTCTGCACATTAACTTCCGTCACATACACAAACCCAGAAACATTGCTGCATCAAGAAAAGAAAAAACAGAGAAAGAATATCAAAAACACGAAGACAACAAACACAAACGCCTTTGATTCTGGAAACAGCAAGAACTTTGAGAGATTACCTTGAGATGATCTGGTCTGGTTCTTCTGCGTATGAGACAGCGAGAACAGAATGCAGTAGATCCCGATCATCGATATTTACAGGTGTCACCCGCAACGGATTTGAAACCGAGGTAGACCCGGCTGGAAGAGCTGATTTTGGCGCTTGTGGTCCACCACCAATTCGGAACACTTGCAGATCACTGAAACTCGATGTATTGGCATACGGAGAGAGTTCTTTCGATAAACCGTAAAAATATTCCTGGAAATTCAGTTTTCGAGTTCTGATTTACATCTCCAAAGTCCAAAGGCATGAAAAAGGGATTAAAATATTTGAGATTGAAAATTTTACCTGAATCTTAAAATTCCTTGATCTTTTACGGACCTCTTTGACCCTGGCTACAACTCCACCAGACTTGTGAAGTTTCACAACGTCGACATTACTCTTACTTCTCAGCACATCTTTAAGCCTGCTGAAGAGTTTTTCCTGACCCAATACAAGTACAACCGAGGCATTGAATGTGTCTATTGCGTGGAGAAGCAGCTGCAAGACGACACAGATACAGTTCTTTAACAAGCGTTTGCATAATGAAATCCACTAAAAAGGAGCTAACTTTACCAGAAAATACGCTAAAAAGGATCTAACTTTTTACCTCATAACCAATACCCTCGATCCATCCCATTGTGTTGATCACCATTCCAGCAGCTCGAGATTCAGGGTTTCCGACAAACTGTCTCTCCAGAACTTGAGCCAGCTCTTTCACCAGAGCTTTGTACAGTTCAACGTTGATACTGAGAGAGCCACAATAGACAGTTTTTAAATTCCTCATCGAGGAAAATAACGTATGATGGGAAGGGGAAATTTGAAAATCACTTACTTTGGTGATGCATGGCCGTAGTAGTACACAAGGGCCATATCAAGAGGAAACCCTTCAACTGGATCCAGTGGCATTTCAATAGGGGCAGCAGCAATACATCCTGGTATTGTAATCGAGCCTTGGCCAACATCAAGGTCTACAAATGTAGGTCTCCATCCCTGTTTAGCTGCCCAACTAAGGAGCATCTTTGTCAATGTGCTCTTCCCGGAATCCGTAGGCCCTACTACAATAACCCGAGGTCCCTGCTTTAAGTGAAATCTTAAGAACCAAGTGTTTTAACTTTGCTGATATCGAGATGCAATAACATTGAATATCGAAGAAAAGTACCTGAGAAGATTCTGGATCATTGGATGTGGAAGCTTTGGCAAAACGTCTCCTTGCATCTAGTATGGCATGCACATTAATGTAGCTGACCATCGGTGTCTAGAAACCGAGACATAGTTAGTAAACACACTTTTCTCTAAGTATCTAAAGCAAGCGTAAGAATGAAACAAGTAACCCAACCTCATCTGCCGTATAGTCAGTTTCCGTGACACCATCCATCTCAATTGTCGCTCCATACCAAGTGAAAACCTAACAATAATCAAAAGGCACAAGATAGTAAGCACGGTGTTTCAGAGCTCCGATCTTGAACTATACATAAATCATTAGGAGAAGGAAAAAAACAGAAAGAAATTGAGAAAAAATCACATTTATCAGCAATCTTTATACAACACACTTAACAATTCTTACCTAGTCAGCATAATCTGCATTTACAACCTAAATCTCAAGTCTTACATCCAACTCAAACCCAAAAACCATCAAACTTCACAGGTAAAGGATGTACCTTTCCAACCCCAAAAGGCCAGAGGGTGAATTCAATAGCAACTCAAGAACCCACTTCCAAAAAGATAACCCACAAACAGAAACTAAATCAAGAAAGGCTCGTTGTTTTCTACCAACAAACCCAACACCACATATGTTACCAACAAGCTCATTTTATCTATTCGCCGTAAGAATAATGCTCTCTAAAACACCACGATTGTATTATAGGTACAGAACACATACCGCAAATTTCATGCGAGCAGGGAACGTACGCCATATTTCAGGAGGCAGTTCAGAGCCAAAAATCTCAGCCGTCCCGTTCACCACACGGAGTCTGAGAGGCTCTTCAGAGACTTCGATCCTGAGCTCGCTTTCTCTCTCCAATTTCACTTGCTTCAGATTAGCAGACCCGGAAACTGGGCCACTTAAAGCCGGTGGATTCATTGGACCACCGTAAGCCATTGCTTTCACTCAGGGTAAGA
CDS Sequence
- >scaffold_300479.1
ATGGCTTACGGTGGTCCAATGAATCCACCGGCTTTAAGTGGCCCAGTTTCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGCTCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTGGTGAACGGGACGGCTGAGATTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACGTTCCCTGCTCGCATGAAATTTGCGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACGGCAGATGAGACACCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGAGACGTTTTGCCAAAGCTTCCACATCCAATGATCCAGAATCTTCTCAGGGACCTCGGGTTATTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTCCTTAGTTGGGCAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTACAATACCAGGATGTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTGTACTACTACGGCCATGCATCACCAAATATCAACGTTGAACTGTACAAAGCTCTGGTGAAAGAGCTGGCTCAAGTTCTGGAGAGACAGTTTGTCGGAAACCCTGAATCTCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGTATTGGTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGGGTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACGTTGTGAAACTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGATCAAGGAATTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTCTCTCCGTATGCCAATACATCGAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGCCAAAATCAGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCGTTGCGGGTGACACCTGTAAATATCGATGATCGGGATCTACTGCATTCTGTTCTCGCTGTCTCATACGCAGAAGAACCAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGCAGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGGTCGCTGGATCATTGACATGGCTTGAGTCAGTATGA
Protein Sequence
- >scaffold_300479.1
MAYGGPMNPPALSGPVSGSANLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELPPEIWRTFPARMKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGCIAAAPIEMPLDPVEGFPLDMALVYYYGHASPNINVELYKALVKELAQVLERQFVGNPESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSLTWLESV