Information report for scaffold_200273.1
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Brassica napus: BnaC09G0167200ZS, BnaA09G0152900ZS
- Brassica oleracea: Bo9g036780
- Brassica rapa: Bra027014
- Glycine max: Glyma.09G185800
- Gossypium hirsutum: Gohir.D05G183500, Gohir.A05G180500
- Juglans regia: Jr11_19040
- Manihot esculenta: MANES_11G098200
- Populus trichocarpa: POPTR_002G013100v3
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: D7KU66
- EMBL: GL348714
- AlphaFoldDB: D7KU66
- KEGG: aly:9322516
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: D7KU66
- eggNOG: KOG0029
- STRING: 81972.D7KU66
- HOGENOM: CLU_004498_5_0_1
Sequences
gDNA Sequence
- >scaffold_200273.1
CACACAGAGAGCAAGAGGCATGTCAACAGAGACTAAAGAAACCCGACCCGAAGACCCGAAAACCCATTCTACTGTGGATTTACCCGGTGAAGAACCTCTCGGAAAGCTTATCGCCGACGAAGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACTGACTTCTCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGATGACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTACTATCGAAACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACAATCACAAAACCCTAATGCGGCGGAGCCAGGTCCTAGGGTAAGAAAACGACGCCGTAGGAAGCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGTCGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTCGCTCACGGAGGAAGAAATCGAAGCGAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGCTAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTGGTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATACAGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAAAGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGCGGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGTTCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGATGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCCGCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTCAGAGATATTTGTCCTTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATCGTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGTTGATAGAGGAGAATAAATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGCTGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAATGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGATGGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGAAAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGTTCTTGTTTACGCAGGAGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGTTAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAGAAGCGATTCAGAGACTCGGATATGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTATAACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCCACTAGAGGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCACTTGTAGCTGGTGACGCTGCAGAAAGATTCGAGTCATTGTCGCCTACTGATTCCGTTAAACGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCGGTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATATGTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGAAGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCCTTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCATCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAAGAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCGGTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATCCAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAGAAGGCAAGCTATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTTAGGTTTTGTACTCGTCGAAAGGAAGAGTTTATCTCAAGAAGGAGAATCGATGATCTCTTCACTCAAAGCTGCAAGATTGAATCGACAGATCTTTGATTAGTACTAAAATAGATTTAGATGG
CDS Sequence
- >scaffold_200273.1
ATGTCAACAGAGACTAAAGAAACCCGACCCGAAGACCCGAAAACCCATTCTACTGTGGATTTACCCGGTGAAGAACCTCTCGGAAAGCTTATCGCCGACGAAGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACTGACTTCTCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGATGACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTACTATCGAAACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACAATCACAAAACCCTAATGCGGCGGAGCCAGGTCCTAGGGTAAGAAAACGACGCCGTAGGAAGCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGTCGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTCGCTCACGGAGGAAGAAATCGAAGCGAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGCTAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTGGTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATACAGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAAAGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGCGGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGTTCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGATGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCCGCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTCAGAGATATTTGTCCTTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATCGTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGTTGATAGAGGAGAATAAATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGCTGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAATGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGATGGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGAAAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGTTCTTGTTTACGCAGGAGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGTTAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAGAAGCGATTCAGAGACTCGGATATGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTATAACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCCACTAGAGGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCACTTGTAGCTGGTGACGCTGCAGAAAGATTCGAGTCATTGTCGCCTACTGATTCCGTTAAACGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCGGTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATATGTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGAAGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCCTTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCATCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAAGAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCGGTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATCCAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAGAAGGCAAGCTATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTTAGGTTTTGTACTCGTCGAAAGGAAGAGTTTATCTCAAGAAGGAGAATCGATGATCTCTTCACTCAAAGCTGCAAGATTGAATCGACAGATCTTTGATTAG
Protein Sequence
- >scaffold_200273.1
MSTETKETRPEDPKTHSTVDLPGEEPLGKLIADEVNDVVSDASATETDFSLSPSQSEQNIEEDGQNSLDDQSPLTELQPQPLPPPPTIETRISESPGEEESSDLVTEQQSQNPNAAEPGPRVRKRRRRKRFFTEINANPAFSRNRRTSVGKEVDSEALIAMSVGFPVYSLTEEEIEANVVSIIGGKDQANYIVVRNHIIALWRSNVSNWLTRDHALESIRAEHKNLVDTAYNFLLEHGYINFGLAPVIKEAKLRSFDGVEPPNVVVVGAGLAGLVAARQLLSMGFRVLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPSGELVDAGVDSKIEASFNKLLDRVCKLRQSLIEENKSVDVPLGEALETFRLVYGVAEDQQERMLLDWHLANLEYANATLLGNLSMAYWDQDDPYEMGGDHCFIPGGNEIFVHALAENLPIFYGNTVESIRYGSNGVLVYAGDKEFHCDMALCTVPLGVLKKGAIEFYPELPEKKKEAIQRLGYGLLNKVAMLFPYNFWGEEIDTFGRLTEDSSTRGEFFLFYSYSSVSGGPLLVALVAGDAAERFESLSPTDSVKRVLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANILRVARRRASSSASNPNQTCIDKEEEVDEEEDSCLDQLFETPDLSFGNFSVLFTPNSDEPESMSLLRVRIQMEKPESGLWLYGLVTRRQAIELGEMEGDELRNEYLREKLGFVLVERKSLSQEGESMISSLKAARLNRQIFD