Information report for RchiOBHm_Chr2g0134371
Gene Details
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Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Actinidia chinensis: CEY00_Acc22153
- Beta vulgaris: BVRB_9g219140
- Citrullus lanatus: Cla97C07G139070
- Cucumis melo: MELO3C017848
- Cucumis sativus: CsGy4G001800
- Daucus carota: DCAR_025528
- Glycine max: Glyma.08G214600, Glyma.07G028000
- Gossypium hirsutum: Gohir.D05G122800, Gohir.A05G121900
- Juglans regia: Jr12_20240, Jr12_20250, Jr07_31810, Jr07_31820
- Manihot esculenta: MANES_04G108600
- Medicago truncatula: Medtr4g009840
- Nicotiana attenuata: A4A49_33343
- Prunus persica: PRUPE_3G093100
- Sesamum indicum: SIN_1021914
- Vitis vinifera: VIT_09s0002g08370
Gene Resources
- Pfam: PF00400
- UniProt: A0A2P6RVT8
- EMBL: PDCK01000040
- AlphaFoldDB: A0A2P6RVT8
- OMA: IKIMANS
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR011047 , IPR015943 , IPR019775 , IPR027728 , IPR036322 , IPR048419 , IPR054080 , IPR054532
- PANTHER: PTHR44083 , PTHR44083:SF45
- SUPFAM: SSF50978 , SSF50998 , SSF75011
- PROSITE: PS00678 , PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
- OrthoDB: A0A2P6RVT8
- STRING: 74649.A0A2P6RVT8
Sequences
CDS Sequence
- >RchiOBHm_Chr2g0134371
ATGTCTTCCCTCAGTAGGGAGCTTGTGTTCCTGATCTTGCAGTTTCTAGATGAGGAAAAATTCAAAGAGACTGTTCACAAGCTAGAACAGGAATCTGGGTTTTTCTTCAATATGAAATATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTAGAGAAGTACCTCTCTGGGTTCACTAAAGTGGACGATAACCGCTACTCCATGAAAATATTTTTCGAGATAAGGAAGCAGAAGTATCTCGAGGCATTGGACAAGCATGACCGGTCCAAAGCGGTGGACATATTGGTGAAGGATTTAAAGGTTTTTGCCACATTTAATGAAGAACTTTTCAAGGAAATCACTCAGCTTTTGACACTGGATAATTTTAGGGAGAATGAACAGCTATCCAAATATGGAGATACAAAGTCTGCCAGGGCGATTATGCTGGTTGAACTTAAGAAACTGATTGAGGCGAACCCCTTATTCCGTGATAAATTGCAATTCCCAAACCTCAAAAATTCGAGGCTGCGAACTCTGATTAACCAAAGCTTAAATTGGCAGCATCAGCTTTGTAAGAATCCAAGGCCGAATCCAGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCCAATGGTGCTCGGGCCCCGTCACCTGCAAACAATCCATTGCTTGGATCCTTACCAAAAGCTGGAGGATTTCCTCCTCTAGGTGCACATGGGCCCTTTCAACCTACACCAGCCCCGGTTCCAATACCTCTTGCAGGTTGGATGTCTAATGCTTCTACTGTTACTCATCCAGCAGTTTCTGAAGGAGGAGCTATTGGTCTTGGTGGTCCCTCGATAACAGCTGCCTTGAAACATCCAAGGACTCCTCCAACTAACCCTTCTGTAGATTACCCGTCTGGGGATTCTGATCATGTTTCTAAGCGAACAAGACCCATGGGACTTTCCACTGAGGTAAATCTCCCTGTTAACATATTGCCAGTGACATTTCCGGGTCACAGTCACAGTCAGGCGTTGAATGCACCTGATGACTTGCCAAAGAACGTCGCACGAACTTTAAATCAGGGTTCATCGCCCATGAGCATGGATTTTCATCCTGTTCAGCAGACTCTGCTTCTTGTTGGTACCAATGTGGGGGACATAGGGCTGTGGGAAGTTGGATCCAGGGAGCGACTGGTTTTAAGGAACTTCAAAGTTTGGGATGTTAGTACTTGTTCAATGCCTCTACAGGCTGCTCTGGTAAAGGATCCTGGTGTTTCTGTTAACCGTGTGATTTGGAGCCCTGATGGTTCTTTATTTGGTGTTGCTTACTCAAGGCACATTGTTCAAATATATTCTTATCACGGAGGTGATGATATACGACAACACTTAGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTCTCCCACCCCAATAAGCAGCTTTGTGTAATAACCTGTGGGGATGACAAGACAATCAAGGTGTGGGATGCTGCGACTGGTTCAAAACAGTATACTTTTGAAGGTCATGAGGCTCCGGTTTATTCTGTCTGCCCACATTATAAGGAAAATATTCAGTTTATCTTTTCAACGGCACTGGATGGAAAAATAAAGGCCTGGCTCTATGACAATTTGGGATCTCGAGTTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCATACAGTGCTGATGGCACAAGGCTCTTTTCATGTGGGACAAGTAAAGATGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGGGCAGTGAAAAGGACCTATCAAGGCTTCCGCAAGCGTTCTTTTGGTGTTGTGCAATTTGATACTACGAAAAACCGGTTTTTGGCTGCTGGTGATGATTTCTCTATTAAATTCTGGGACATGGACAATGTTCAGCTTCTAATGACAGTTGATGCTGATGGAGGCCTCCCGGCAAGCCCCCGTATCCGCTTTAACAAGGATGGCACTCTCTTGGCTGTATCTGCCAATGAGAATGGGATTAAAATTTTGGGCAATGCAGATGGTGTTCGGCTGTTGCACACATTTGAGAATCTTTCTTATGATGCATCAAGGTCCTCTGAAGTTGTGACAAAGCCTGCAATGAACCCAATTTCTGTTGCTGCTGCCGCCGCCGCTGCAGCTGCTACAAGTGCTGGACTGGCTGAGAGAAATGCATCTGCGGTTGCTGTTTCTGGAATGAATGGGGATGCTAGGAACTTGGGGGATGTGAAACCTAGAATAACTGAAGAATCCAATGACAAATCAAAGATTTGGAAACTCACTGAAATCAACGAACCGTCTCAATGTCGTTCCTTGAGGCTACCTGAAAATATGAGAGTAACCAAGATATCAAGATTAATCTATACAAATTCTGGTAATGCAATTCTGGCATTAGCATCGAATGCCATCCATTTGCTCTGGAAATGGCAAAGGAATGATCGCAATTCTGTTAGCAAGGCAACTGCCAGTGTTTCACCTCAACTCTGGCAGCCAACAAGTGGCATTCTAATGACAAATGATGTTACTGACACAAGTCCTGAAGAAGCTGTTCCTTGCTTTGCTTTATCCAAGAATGATTCTTATGTAATGTCGGCTTCTGGCGGAAAGATTTCCCTCTTCAATATGATGACATTTAAGACGATGACAACTTTCATGCCACCACCACCTGCAGCAACATTTCTTGCTTTCCATCCTCAAGATAACAATATTATAGCTATTGGCATGGATGATTCTACAATTCAGATATATAATGTCCGTGTGGATGAGGTTAAGAGCAAGCTTAAAGGTCACTCTAAAAGGATAACTGGCCTAGCATTCTCTCATGTATTAAATGTGCTAGTTTCATCAGGAGCAGATGCTCAGGTTTGTGTGTGGAATTCTGATGGATGGGAAAAACAGAAGAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGATCAGGCACATTTCTTGGTTGTGCATGAGACTCAGCTGGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGTGGCTCCCACGTGAGTCTGCTGCCCCCATCTCCCATGCAACATTCTCATGCGATAGCCAGCTTATTTATGCCAGCTTTTTAGACGCAACCGTGTGCGTCTTCAGTGCTGCAAATCTCAGACTACGATGTCGTATTAATCCTCCTGTTTATCTTCCTGCCAATGTCAGCAGTTCTAATGTACAGCCCCTCGTGATTGCGGCACATCCACAAGAACCAAACCAGTTTGCTCTAGGACTATCAGATGGTGCGGTTCATGTGTTTGAGCCCCTTGAATCAGAAGGCAAATGGGGTGTGCCTCCACCTGTTGAAAATGGGTCTGCAAGCAGTTTGCCAGCTACTCAAGTTGGAAATTCAAGTTCTGATCAAGCTCAGAGATGA
Protein Sequence
- >RchiOBHm_Chr2g0134371
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLTLDNFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPIPLAGWMSNASTVTHPAVSEGGAIGLGGPSITAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGLSTEVNLPVNILPVTFPGHSHSQALNAPDDLPKNVARTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDVSTCSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGSKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSFGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLMTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILGNADGVRLLHTFENLSYDASRSSEVVTKPAMNPISVAAAAAAAAATSAGLAERNASAVAVSGMNGDARNLGDVKPRITEESNDKSKIWKLTEINEPSQCRSLRLPENMRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSVSKATASVSPQLWQPTSGILMTNDVTDTSPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQVCVWNSDGWEKQKSRFLQLPAGRTPSSVSDTRVQFHQDQAHFLVVHETQLAIFETTKLECVKQWLPRESAAPISHATFSCDSQLIYASFLDATVCVFSAANLRLRCRINPPVYLPANVSSSNVQPLVIAAHPQEPNQFALGLSDGAVHVFEPLESEGKWGVPPPVENGSASSLPATQVGNSSSDQAQR