Information report for RchiOBHm_Chr2g0086421
Gene Details
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Functional Annotation
- Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.
Homologous
- Actinidia chinensis: CEY00_Acc14535
- Capsicum annuum: T459_18931
- Citrullus lanatus: Cla97C06G121290
- Daucus carota: DCAR_019361
- Glycine max: Glyma.13G156500, Glyma.17G104100
- Gossypium hirsutum: Gohir.A05G049800, Gohir.D05G051600
- Juglans regia: Jr06_20160, Jr06_20150
- Lactuca sativa: gene-LSAT_5X90720
- Medicago truncatula: Medtr4g116860
- Populus trichocarpa: POPTR_006G188800v3
- Prunus persica: PRUPE_7G252800
- Solanum lycopersicum: Solyc07g005030.3
Gene Resources
- Pfam: PF00270 PF00271 PF02170 PF00636
- UniProt: A0A2P6RIC6
- EMBL: PDCK01000040
- OMA: YHVNRMC
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF15
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- OrthoDB: A0A2P6RIC6
- CDD: cd00593 , cd18034 , cd18802
- STRING: 74649.A0A2P6RIC6
Sequences
CDS Sequence
- >RchiOBHm_Chr2g0086421
ATGGACGACGTGCCGCCCGATACGGGTCCTCCACCACCGCAGAGAGGTGGGGAAGAGGAGGGTCGGGCTGGGGAGTCGGGTGATGGAGCTCCGAGGCCGGATAAGGATCCGAGGAAGGTTGCCCGGAGGTATCAATTGGAGCTGTGTCAGAAAGCTGTGGAGGAGAACATAATTGTCTATTTGGAAACTGGCTGTGGAAAGACCCACATAGCAGTGTTGCTTATCTATGAGCTGCGCGAGTTGATAATGAAACCTCATAAGAACATATGTGTGTTTCTTGCGCCTACGGTGGCGCTTGTTCAACAGCAAGCAAGAGTTATAGAAGATTCCCTTGATCTCAAGGTTGGGACCTATTGTGGAAGCTCTAAGAAATTGAAAACTCACCAAGACTGGGAAAAAGAGATGGAACAATATGAGGTTTTTGTCATGACGCCTCAAATACTGTTACGTAACTTATACCACCGTATTATTAAGATGGAGTTGATTGCATTGCTGATTTTTGATGAGTGTCATCACGCTCAAATAAAAAGCAACCATCCTTACGCAGAAATTATGAAATTTTACAAGAATGATGCCACGAAACTTCCTCGTATATTTGGCATGACTGCATCTCCAGTTGTAGGTAAAGGCACTTCTAGTCAATCGAATTTATCAAAGAGTATCAATAGTCTTGAAAATTTACTTGATGCTAAGGTTTATACGGTTGAAGACAAGACAGAATTGCATTGTTCTGTTGTTTCTCCTCTTATCAATGTCCATCGTTATGGTCCTGTTATTAGTGGCACATCCAGCCCCTGCATGACTTTTTCTAGAAATCTTGACCAGCTGAAACGCCAGTGTATAGCGGAACTTAGTAAGAAGACGAGTGACTACCAAAGTCTAAGGAGTACAAAGAAAACATTAAACAGAGTGCATGACAGTATAATATTTTGCTTGGAAACTCTTGGCCTTTGGGGTGCGTTACAAGCTAGACATATTCTTTCGAGTGGTGATAACTTTGAACGAAATGAATTAATAGAGGAAGGCAATAATGATATAGAGGCAGAAGGAAATAATAGTGATGACTCTGTATGTGCGGAATATCTGGCTCAGGCAGCTGACATCATTCGTACTGACTATGTGAAAGATGCTGTTGCATCTGGTCTATCTTGTGTAGAGATCTTAAAGGAGCCATTCTTCTCAAGTAAGGTCTTACGTCTTATTGGAATTCTTTCATCCTTCAGGTTGCAGCAGGATATGAAATGCATAATTTTTGTCAATAGGATTATTACTGCAAGATCCTTGTCCTACATTCTACAAAACCTTAAGAATCTAGCATCTTGGAAGTGCGATTTTCTTGTAGGAGTCCACTCGAAACTGAAGAGTATGTCAAGGAAGACGATGCAGATCATTCTTGATAAGTTTCGGTCTGGAGAGTTGAATCTATTGGTTGCAACTAAAGTTGGTGAAGAGGGACTAGATATTCAGACTTGCTGCCTCGTGATACGATTTGATCTTCCAGAAACTGTTGCTAGCTTTATACAGTCACGAGGTCGTGCACGGATGCCTCAGTCTGAATATATATTTTTGGTAAACAGTGGTAGTCAGAAAGAGTTGGATTTAATAGAAAACTTCAGGAAAGATGAAGAGCGAATGAACATGGAAGTTGCTTTCAGAACATCCAGTGAGACTTTTCTTAGTCCTGAGGAACGAACATATAAAGTTACTTCTTCTGGAGCTTCCGTCACTTCTGGATATAGCATCTCATTGTTACACCTGTATTGTTCGAAGCTTCCACATGATGAGTATTATGTCCCCACTCCAGAATTCTATTTTCTTGGTGATTTGGAGGGAACTATTTGCCATATAATTTTACCTTCCAATGCTCCAATGCATCAAATTGTCAGTACACCACAATCTTCAATGGAAGATGCCAAAAAAGATGCATGTCTAAAAGCCATCGAAGAATTGCATAAATTGGGTGCCTTAAGTGATTATCTCTTGCCACAGCAAGACAATGCAAATGTGGAGGAGTACATGCTAGACTCTTCTGATTATGACAGCATGGAAGATGAAGACTTACGAGAGGAACTACATGAAATGCTGGTTCCTGCTGTCCTAAAAGAGTCATGGAATAAGTTGGAGGATCTCGTCACCCTCAGCGCTTACTATTTTCAATTTGATCCTGAACCTAATGATAGAATCTATAGAAGTTTTGGTCTATTTGTCAAAGCACCTCTTCCAGCAGAGGCCGAAACAATGGAACTTGATCTTCATCTCGCTCATGGTAGATCTGTGATGACAAAGTTGGTGCCATCAGGATTTGCAGAATTTGTCAAAGATGAGATCTTGCTGGCTCAAAACTTTCAAGAAATGTTCCTCAAGCTCATTCTGGACCGATCAGAATTTGTTTCTGAATTTGTTCCCCTGGGAAACTATGATTTTAGCAGATCGAGCACATCAACCTTCTACCTTTTGCTTCCAGTAACTTTGGGTGAAAATGATAAGATAAGCATAGATTGGAGGATTATCAAAAAATGTTTATCATCTCCAATATTCAGGGGTCCAGGAGATGCTATGGACAGTAAAATTATATCTTCGGGTATTCGACTTGCATCTGGTTATAGAAGCATCAGTGAAGTTGAGGATAGTTTAGTTTATGTCCCATATAAGAATACATTTTACTTCATCACTAATGTTACTCGCGAAAGAAATGCCTACAGCCAATATAAAGAAAAGTCAGATGCTTTAACCTATGTGGATCATCTAAGTAAAAAGTTTGACATTTCTCTTAAATACCCTGAGCAACATCTTTTGTGTGCAAAACCAGTTTTCAATTTGCACAACTTGCTACACAATCGTAGGCAAGAAGATTCAGAAGCACAGCAACTAGATGAGTATTATATATATGTGCCTCCTGAGCTTTGCGAGCTGAAGGTAATTGGCTTTTCAAAAGATATTGGGAGTTCGGTATCTCTGTTACCATCAATCATGCACCGTCTGGAAAACTTGCTTGTCGCCATCGAACTGAAGCATGTATTATGCACTTCATTCCCCGAAGGAGCTGAGGTTACTTCGCAGAGAGTTCTAGAAGCCCTCACAACTGAGAAGTGCCAGGAGCGGATTTCCCTTGAAAGGCTTGAAATACTAGGAGATGCTTTCCTCAAATTTGCAGTTGGAAGGCACTTTTTCCTTTTGCATGCTTCACTTGACGAAGGTGAACTAACAAGGAAACGTTCAAATGTGGTAAACAATTCCAATTTATTGAAGCTAGCTACTAGAAGCAACTTACAGGTATACATACGGGATCAGCCATTTGAACCCTCTCAGTTCTTCGCTTTAGGCCGCCCTTGCAAAAATATTTGTGACCAGGAGACAATAGGATCTCTTGATTCTCAAGATTTAAGCAGTGCAGTAAAACAGTCACATGCTCGTCACGTCAGATGTAGTAAGGGTCACCATTGGTTACATAAAAAAACAATTGCTGATGTTGTTGAAGCCCTTGTTGGAGCATTCATAGTTGACAGCGGTTTTAAAGCGGCAACTGCATTTCTCAGATGGATTGGCATAAAAGTAAACTTTGAAGCATCAGAAGTTACTAAAGTATGCATAGCAAGCAGCAGATACGTTTCACTTTCTGCTTCCATAGACATTGTGGCCCTTGAAAATTCATTAGGGTATCAGTTTCTCCACAGAGGTTTGCTGTTACAGGCATTTGTACATCCTTCTTACAACAAACATGGAGGAGGTTGCTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTACTTGATCACCTCATACCTGTATTCAGTGTATCCAAAGTTAAAGCCTGGCCATTTGACAGATTTGAGATCAATTGCTGTGAATAATAAAGCCTTTGCTACTGTTGCAGTAGCTCGATCCTTCCACAAGTTTCTACTCTCTGACACCAGTACCCTTTCTGAGGCTATAAAGACTTATGTGAACTTCATTGAGACATCTGCATCAGATAGTAGTCTGGTTGATGGGCCGAAATGCCCCAAGGCTCTGGGGGACTTGGTAGAGTCTTGTCTTGGTGCAATTCTTCTTGATACAGGGTTTGACTTAAACCGTGTTTGGAAGATAATGCTATCCTTTCTGGAGCCTGTCATGAACTTTTCCAACATTCAGCTTAGTCCTGTTAGGGAACTACGGGAACTTTGCCAAGCTCATGCATGGATTCTTAAGTTTTCACCATCAAAGAAGGGTAAAACGTTTTCAGTTGAGGCAACAGTGAATGGGAACAATGTTTCTGCAACTGCTTCCTCAACTGCCTTGAACAAAAAGGAGGCAATTAAAATTTCTGCTCAGTTAATTTTCGAAACGTTGAAGGCTCAAGGCAATATACCAAAGTCTAAGTTGTCTTTGGAGGAAGTCTTGAAGTCAAGCTCCAAGTTGGAACCCAAACTTATCGGATATGATGAAACACCAATAGATGTTACAGCTCTTGATGTTATTGGATTTGATAAGTTAAATGTACAAGAGGCTTCTAGCAGCAGTTCCAACTCAGATGTGCACTCTATGAGTGAAGTTAGCGGTGGTAACTCCTCCTGCATAAAACGCTTACGACAACCCCCAGCTTCACTTGGAGAAGTCAAAATGGACAACACTAATGCCTGTAACAGTCGTAGCTCTGATGCTATCTCACAAAGCAGAGGTGTGCCACACAAATTAACAGCAAAATCTCGTTTGCATGAGACCTGTGTTGCTAACTTCTGGGAACCCCCTGAATTTGAATGTTGCAAAGAGGAAGGACCAGGCCACATAAAATCGTTCACTTTCAAGGTTACAGTGAAGATAGATGATGTTTCAGATACACTTTTGGAGGCCTTTGGAGAACCTCGTACGAGCAAGAAAGCAGCAGCAGAGCATGCAGCGGAAGGGGCACTTTGGTACTTGGAAAAGAAAGGTTACATAGAGGAGAGTGATCAATCAGAGGAACCTTAA
Protein Sequence
- >RchiOBHm_Chr2g0086421
MDDVPPDTGPPPPQRGGEEEGRAGESGDGAPRPDKDPRKVARRYQLELCQKAVEENIIVYLETGCGKTHIAVLLIYELRELIMKPHKNICVFLAPTVALVQQQARVIEDSLDLKVGTYCGSSKKLKTHQDWEKEMEQYEVFVMTPQILLRNLYHRIIKMELIALLIFDECHHAQIKSNHPYAEIMKFYKNDATKLPRIFGMTASPVVGKGTSSQSNLSKSINSLENLLDAKVYTVEDKTELHCSVVSPLINVHRYGPVISGTSSPCMTFSRNLDQLKRQCIAELSKKTSDYQSLRSTKKTLNRVHDSIIFCLETLGLWGALQARHILSSGDNFERNELIEEGNNDIEAEGNNSDDSVCAEYLAQAADIIRTDYVKDAVASGLSCVEILKEPFFSSKVLRLIGILSSFRLQQDMKCIIFVNRIITARSLSYILQNLKNLASWKCDFLVGVHSKLKSMSRKTMQIILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYIFLVNSGSQKELDLIENFRKDEERMNMEVAFRTSSETFLSPEERTYKVTSSGASVTSGYSISLLHLYCSKLPHDEYYVPTPEFYFLGDLEGTICHIILPSNAPMHQIVSTPQSSMEDAKKDACLKAIEELHKLGALSDYLLPQQDNANVEEYMLDSSDYDSMEDEDLREELHEMLVPAVLKESWNKLEDLVTLSAYYFQFDPEPNDRIYRSFGLFVKAPLPAEAETMELDLHLAHGRSVMTKLVPSGFAEFVKDEILLAQNFQEMFLKLILDRSEFVSEFVPLGNYDFSRSSTSTFYLLLPVTLGENDKISIDWRIIKKCLSSPIFRGPGDAMDSKIISSGIRLASGYRSISEVEDSLVYVPYKNTFYFITNVTRERNAYSQYKEKSDALTYVDHLSKKFDISLKYPEQHLLCAKPVFNLHNLLHNRRQEDSEAQQLDEYYIYVPPELCELKVIGFSKDIGSSVSLLPSIMHRLENLLVAIELKHVLCTSFPEGAEVTSQRVLEALTTEKCQERISLERLEILGDAFLKFAVGRHFFLLHASLDEGELTRKRSNVVNNSNLLKLATRSNLQVYIRDQPFEPSQFFALGRPCKNICDQETIGSLDSQDLSSAVKQSHARHVRCSKGHHWLHKKTIADVVEALVGAFIVDSGFKAATAFLRWIGIKVNFEASEVTKVCIASSRYVSLSASIDIVALENSLGYQFLHRGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGHLTDLRSIAVNNKAFATVAVARSFHKFLLSDTSTLSEAIKTYVNFIETSASDSSLVDGPKCPKALGDLVESCLGAILLDTGFDLNRVWKIMLSFLEPVMNFSNIQLSPVRELRELCQAHAWILKFSPSKKGKTFSVEATVNGNNVSATASSTALNKKEAIKISAQLIFETLKAQGNIPKSKLSLEEVLKSSSKLEPKLIGYDETPIDVTALDVIGFDKLNVQEASSSSSNSDVHSMSEVSGGNSSCIKRLRQPPASLGEVKMDNTNACNSRSSDAISQSRGVPHKLTAKSRLHETCVANFWEPPEFECCKEEGPGHIKSFTFKVTVKIDDVSDTLLEAFGEPRTSKKAAAEHAAEGALWYLEKKGYIEESDQSEEP