Information report for Pp3c8_3950
Gene Details
|
|
Functional Annotation
- Encodes a protein with similarity to mammalian nucleoporin Nup98.Its expression is upregulated in mutants that are NUP deficient. Nucleoportin which redundantly inhibits flowering together with Nup98a through multiple pathways including clock, photoperiod, and age pathways. Gates flowering in a CONSTANS (CO)-independent mode and bypasses the CO checkpoint in photoperiodic signaling and integrated signals from multiple pathways to directly target FLOWERING LOCUS T (FT) for flowering control.
Homologous
- Brassica napus: BnaC05G0081700ZS, BnaA06G0066100ZS, BnaA09G0171700ZS
- Brassica oleracea: Bo9g046570
- Brassica rapa: Bra019938
- Citrullus lanatus: Cla97C09G178300
- Cucumis melo: MELO3C024716
- Cucumis sativus: CsGy2G026970
- Daucus carota: DCAR_023771
- Glycine max: Glyma.13G264100
- Gossypium hirsutum: Gohir.D08G121000, Gohir.A08G108000, Gohir.A02G094700
- Nicotiana attenuata: A4A49_04265
- Vitis vinifera: VIT_02s0025g03150
Gene Resources
- Pfam: PF04096
- UniProt: A0A2K1K630
- RefSeq: XP_024382323.1
- EMBL: ABEU02000008
- OMA: ESCPNDH
- PANTHER: PTHR33416 , PTHR33416:SF20
- OrthoDB: A0A2K1K630
- STRING: 3218.A0A2K1K630
Sequences
CDS Sequence
- >Pp3c8_3950
ATGGCTGCTATGGCGTATTCGCCAGTGCAGAATGGAGACAGGGGTACGTATGGTGCAGGCGGGGGCGGCAAGATGCGCCCTCGACGAGCTCCGAAACGAAATGGTACACCGTATGACCGGCCGGCTGTTGGGCGTCATGCGTCGGCTGGGCCTCAGGCGGCCGCGTTGATGAATGCCAATGGAGGTGCGGCGGACGGAGCGAGGCGGGAAGGATGGCTGGGGTCGAGGTTGCTCGGCACCGCTTCCAAGATTGTCACCTCTGGGGCTTCGTTCCTGTATTCTTCATTTTTCAGGCGCCCGGCCGGGGACGGTCTGTTGCTGCTCAAAGAGGCGGAGAAAACTGCTGCGAATAATGCCGAAGGGCAAACGGACACGTTGTCGCCTTCAGCTGCCGAAGTTGAGTCTATGGAAGCTGGAAGCCAGCAAGGCGAGGAAGACAAAACGTCAGAAGTGGAAAGTTGGATGAAAAGGACCTTCTCAAGGGAAGAAGCCGATCGGTTAATTGCAAGTTTCAAGTCATACTCTAAGGAGAATGGGACCGCAGAAGAACAAGTCGATCACGTTAACACAGAAGAACAGAGAACTACTCATGTTAACCATGTTCCGGCCCTCGAGTCTGCTCCAAGCAATGGGCAACTTTCCGATGCTCAAAGATGGAGGGAAGAGCGCACGAAAGCTCGGCAAGAACAGAAATCTAACCATTGGCCGGGTGATTTTGGAAAAGAAAATGGCACTCCTACTGAGGCTGGGGCTTCTGAGGGGGTAGAAATTGTGGCAGTTGATGTTGCTAGAGCGTACATGGGGGAGCGAGTTACAAGAGTGGTTACACCTGCTCGGGTCACACTTACTCGGGAAAAAGTTCCAACTCAACTACGACTCTCTCCTTACCAGTCTTCACCTTATATGTTGAGGAAGCAACAACCAACCAATATCTCAACTCAGTACGGTTCCGCCGATGTTCCTGGTTCTTTTCATTTTCCCCCTCCAGGTGGCCTTCGTAGTCGAGATATTGGTTTTGATGAAAACCTGCGAACTCCAGCTCTGACTCGCACGGTTGGACGCCCTCTGCCTGTTGCCCGTATCACCGCACCCAGTTCAGCAATTGGATATTCACTGCCCGGAGAGGGGTCCAAAAAGAGAGGTTCCGCAGCTCTAGAGGATGGTGGGTATTCTTCTGGTGGGCCTATTCGACGATTAAGGCCTAGGTCATCTTTGTACACTCCAAGTCCAGCCAGTGGAATTCTAAGACGAGGATCATTGGGCGTGTATCCTCCTCCTCCAAGGGCATTACCGACTCCTGTTGATGTCAAACAAAAGGTGATCACAATGTGGAGCCGGAATGTTGAAACCGAGGGAAAAGGTAATGCGAAATTTTTTCATCAGCACGAGGAAAGCAAAAGTTCAGAAGTAGAACCAAATGCATCTGTACCCGAAAGAGCAAGTGCAACAGCTCGCAAAATTTTAGAAACTTTGGACATGATGACTCCATCTCCAAAACAGAAGTCTTTGGACACAGAATTGGCATTTGTGAGGGAGCGTCCACCTACTGAGCTCATTACTAGTATGGTGAACGACAAGGCACGTCAGACCATGCAGTCTTGGGATTTTGCTGGGCCTCAGGAAGAAGCTGGACCTTCAGGACAGGGTCGCAATCTTGAGGATGATTTGTACTCTGCTGCTGGAGGTTCTCGGACGGGAGCTGAACAGGGCACAAAGTCAAGAGTCAAAGGCAAAGCGCCAGCTTCTGCCTTATCACATGCTTCTGAAGATAAGAGTAGAGATCAACCATCATTTCCTTTCCAAGACGCATCCAGGTTGAAGTTTCCAGAGTCTAGTTTGGCTAACCAAAGCCCAGTCATTGGAAAAAATAAAGGATTTCAGATTAATGCGGATTTCGATGATTCGGATGAAGAAACCAGAGGAACTAACGCTACCTTGCTTACCCCCACTGTGACAAATTCAACTTCATTCACAACGGGCAAAAATAGTTCCTCTGGAGCTGGCTTGTTCGATAATGATCCACCCAGATCCTCGAGTTTTACAGCAGACGTATCTGGTCCTTCAATTGGTTTTGGGTTTCAGAGGGATACCTCAGAGACTACTGTGATTGATGGAAAATCAACTGCTGCTCTAGGGGGTTTTACATTTCCATCCTCCAATTCTTTTGGTACCACCATGGAGCCGCCTCCGACACCTAAGCCATTTCCATCCCCATCCAGCACAGAATCTGCATCTAAGTCCAATGGCCCGCCTAGTTACAAATTCAACACAGGTGCTCTAATTGATAATATGGTACTAAAACTGCCCTCAACAGGGGCAGGTGGGGCTGATAATAGTGTACATACTGATGAGACGAAATCTAAGCATCAGACTGAAAGGAAACCAGACTCTTTACAAAGTGACTTGTCTGTATCTAACACTTCGAATGCAGCTGAAGCACCAAAAGGACAAACTTCTATGTTTGGTTCGTCAGGCCCGGAAACCTCCACGACTGCTACAACATCCTTGTCTTCCACGTTCTCGTTGGCTAAATTTGGAGCCCCTGGTGCGGGGGCAATGTCAGGTATATTTGGTTCAGGCGGTCAAACTGCTAGTTCTACTGCAGGATTCTCAAATTTGACTACCTCGGTTTCAACTACTGAAACAAATCTCTTCAATCCTGGCAAGACGGGATCATCTCCATCTGCAGAACCTGCTACCCTGAAAGCTGATGCATCTCTTAGTGCTGGTTCTAAATTATTCGGAAACGCAGCGGTATCTCCGGCTCCATCAACCGCAGCCACATCCTCTTCTGCTTTTGGAACGAAAAAGGACCTATTTTCATTTGGGGCAGCAGCTAGCACTTCTCCAGCTCCGCCTCTGCAGTCAACCGCTCCTGCTTCAACTTTGGATGATGCAGATAGACCTCAAAAGCGGCCGTTTGGTCAGGAGAAGACTATTGATAATTCAGGGGCTGCTCCTGTGACTTTTGGATTGTCCGCTGCCGGAACTATCCCAGCTTCAGCGTTATCGACAGCGAACTTCTCTACTTCAGTTTTTGGTCAGGGCTCAAGCTCACCAGCACCAGCGTCCAATTCCACGTCCCTGTTTGGCTTTAAGCCCTCTCCTGCGACCTCAACTACTTCGACATCATCCTTGGCCACGACTTCATTTGGTACGACAAATGCATTTGGGTCATCCTCTCTTATTTTTGGCAGCTCAACATTTGGGTCGAGCAATCCAACACCAGCATTGGGTGGAGCTTCCAGTTCTCCTATATTCGGTGCGTCAAGTACTGCATCTTTTGGAGCTTCGAGCACTCCTACATTTGGGTCGTCAAGTGCTCCAGCATTCGGAGCTTCTAGCACTCCCGCATTTGGAGCCTCAAGCACTTCCGCATTTGGAGCCTCCAGCAACCCGGCTTTTGGAGCTTCTAGCATTCCCGCATTCGGAACTTCTGGCACTGCTACATTTGGGGCACCTAGCACTCCTGCATTTGGAGCATCTAGCACTGCCGCATTTGAAGCATCTAGCACTCCCACATTTGGAGCATCTAGCACTCCCATATTTGGAGCGTCCAGCACCCCGGCATTTGGAACGTCTAATACAAATAACAAACCTGCCTTCGGAGGTTTCAGCTCAGAAGCTCCAGCACAACCTTCCCAATCTCATGCTCCCGTCTTTGGTTTTGGATCCTCTGCTAATACGGGGTCATCACCTTCTCCAGCTCCTTTTTCATTTGGTTCTTCTGTTGGGTCTGGTTCTCCCTTCGCTTTTGGTTCCGGTGCCGCATTACCAACCACGTCAACTGGTGCTTTTGCATTTGGAGCATCTAGTGCCCCATCACCGACTACTTCAACTGGTGCATTTGCTTTTGGTGGTTCCAGCGCCGCATCACCTGCACCCTTCAGTTTTGGTGCGAAACCTTCTTCTCCGTCAATGTTTGGCGTAGGTAGCTCGGCACCTGCATTTTCATCCACTCCAAACGGTGGGACGGGAACTGATATGGAAGACAGTATGGCTGATGATGGCCAGATGATGGCCTCTTCACCACCTCCACAACAAACACCCGTTTTTGGTGCTGCCCAAAATGCATTTGGTAAACCCACCGCCTCAGCCCCCGCACCTGCACCAGTATTTGGAGGCTTCGGGAGTTCAGCAGCTTCTCCAGTGGCGAATCCATTTGCAGCATCATCTACTCCGCAACCTTCCCCTCCTATTGCCGCCAATCCTTTTGCGCCATCGCCTCAGCCAGGACAACCTCTTAACTTTGGTGGTGGTGGTTTTGCTCTTGGATCAACTGGACAAGACTCGGGTGCTAAACCTAATAGGAAGTTTATCAAAGCCAAAAGGGCAGGCAGCGTCAAAAGGAAGTAA
Protein Sequence
- >Pp3c8_3950
MAAMAYSPVQNGDRGTYGAGGGGKMRPRRAPKRNGTPYDRPAVGRHASAGPQAAALMNANGGAADGARREGWLGSRLLGTASKIVTSGASFLYSSFFRRPAGDGLLLLKEAEKTAANNAEGQTDTLSPSAAEVESMEAGSQQGEEDKTSEVESWMKRTFSREEADRLIASFKSYSKENGTAEEQVDHVNTEEQRTTHVNHVPALESAPSNGQLSDAQRWREERTKARQEQKSNHWPGDFGKENGTPTEAGASEGVEIVAVDVARAYMGERVTRVVTPARVTLTREKVPTQLRLSPYQSSPYMLRKQQPTNISTQYGSADVPGSFHFPPPGGLRSRDIGFDENLRTPALTRTVGRPLPVARITAPSSAIGYSLPGEGSKKRGSAALEDGGYSSGGPIRRLRPRSSLYTPSPASGILRRGSLGVYPPPPRALPTPVDVKQKVITMWSRNVETEGKGNAKFFHQHEESKSSEVEPNASVPERASATARKILETLDMMTPSPKQKSLDTELAFVRERPPTELITSMVNDKARQTMQSWDFAGPQEEAGPSGQGRNLEDDLYSAAGGSRTGAEQGTKSRVKGKAPASALSHASEDKSRDQPSFPFQDASRLKFPESSLANQSPVIGKNKGFQINADFDDSDEETRGTNATLLTPTVTNSTSFTTGKNSSSGAGLFDNDPPRSSSFTADVSGPSIGFGFQRDTSETTVIDGKSTAALGGFTFPSSNSFGTTMEPPPTPKPFPSPSSTESASKSNGPPSYKFNTGALIDNMVLKLPSTGAGGADNSVHTDETKSKHQTERKPDSLQSDLSVSNTSNAAEAPKGQTSMFGSSGPETSTTATTSLSSTFSLAKFGAPGAGAMSGIFGSGGQTASSTAGFSNLTTSVSTTETNLFNPGKTGSSPSAEPATLKADASLSAGSKLFGNAAVSPAPSTAATSSSAFGTKKDLFSFGAAASTSPAPPLQSTAPASTLDDADRPQKRPFGQEKTIDNSGAAPVTFGLSAAGTIPASALSTANFSTSVFGQGSSSPAPASNSTSLFGFKPSPATSTTSTSSLATTSFGTTNAFGSSSLIFGSSTFGSSNPTPALGGASSSPIFGASSTASFGASSTPTFGSSSAPAFGASSTPAFGASSTSAFGASSNPAFGASSIPAFGTSGTATFGAPSTPAFGASSTAAFEASSTPTFGASSTPIFGASSTPAFGTSNTNNKPAFGGFSSEAPAQPSQSHAPVFGFGSSANTGSSPSPAPFSFGSSVGSGSPFAFGSGAALPTTSTGAFAFGASSAPSPTTSTGAFAFGGSSAASPAPFSFGAKPSSPSMFGVGSSAPAFSSTPNGGTGTDMEDSMADDGQMMASSPPPQQTPVFGAAQNAFGKPTASAPAPAPVFGGFGSSAASPVANPFAASSTPQPSPPIAANPFAPSPQPGQPLNFGGGGFALGSTGQDSGAKPNRKFIKAKRAGSVKRK