Information report for Pp3c1_3340
Gene Details
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Functional Annotation
- Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.
Homologous
- Actinidia chinensis: CEY00_Acc13183
- Citrullus lanatus: Cla97C04G070710
- Cucumis melo: MELO3C026332
- Gossypium hirsutum: Gohir.A09G121000, Gohir.D09G117100
- Juglans regia: Jr03_04990, Jr03_05000
- Lactuca sativa: gene-LSAT_5X160760
- Populus trichocarpa: POPTR_016G043500v3, POPTR_006G047100v3
- Sesamum indicum: SIN_1023506
- Solanum lycopersicum: Solyc04g016370.3
- Vitis vinifera: VIT_08s0007g09020
Gene Resources
- Pfam: PF13892 PF00271 PF00176
- UniProt: A0A2K1L6S3
- EMBL: ABEU02000001
- OMA: NYDCERM
- InterPro: IPR000330 , IPR001650 , IPR014001 , IPR020838 , IPR027417 , IPR038718 , IPR049730 , IPR050520
- PANTHER: PTHR45685 , PTHR45685:SF2
- SUPFAM: SSF52540
- PROSITE: PS51192 , PS51194 , PS51413
- Gene3D: 3.40.50.10810 , 3.40.50.300
- OrthoDB: A0A2K1L6S3
- CDD: cd18793
- STRING: 3218.A0A2K1L6S3
Sequences
CDS Sequence
- >Pp3c1_3340
ATGTGGGTGCGGTCGCCGGAGAATGGATCTCCCGCGCAGGAATACGATTCTCCAAGTCGGAGTCAGGTTTCTGATGAAACCGACTACAGCCAAGATGACTGGCGAATCAATGGACACGCTGAACTGGAGGCTGAAAGGCACGCTGTGATTCGGCCTGAAATGACCCTGAAGAGGAAGAGAGTGCCAATAGAAGCATACGCAGGTTCTAATTCTGCCCCCAGACATGATGCGGACAGCAATGATGAGGAGGAAGAAGAAGATGATTATGATGTTCGTCAGGATTACTATGAAGAGAGCCATCCCAATCGTGGTGATTCCTATGACGAACCTGCAAAAGATTTTTATCATGATCAATCTGGCGGAGGTTTATATCGTGAGCCTTCCGCAGAAGGCTCCTATCGAGAGCACTATCAAGGGGGCTCATATCTTGAGCAATCCGCAGGGGGTTCTTACCATGAGCAGTCTGGAGGAGATTCCTATCGCGAGCATTCTGACGAGCACTCTTATCGTGAACAATCTGAAGGTGGTTCCTATCGGGATCAATCTGAAGAACGTTCCTATCACGAACAATCTGGAGGTTCTGATCACGAAATAGGACCACAACGGCCTCAGTCGCATCAGAAAGCATTTCATTTAAAGAGTGCTGCATCACTTCCTAGTAACATGGAGAAAGGACCGGGTACTTATTTGGTCTTAGAGGATGGCGTTGAATTTCAAATTCCTCAGTATTATGACGAACTCGCTCTGTCCCTTCACCTTCCTCCTTTTAACGCACTGCAAATTGAAGAGAAGGTTGTGTATGGCCGACTCAAAGCAACTGCTTTTTTCGCAATTATGGATGCGGATCCCTGGGCACAGCTATGGCGAAAACAGTATGAGATGGGGGAGTGCCGGGGTAAATGTTTTGACAAGGAAAATAAGCGGAGGTTGCTTGAGAAGAGAAGATTCGGATTACAGGTGATCGACTCAAGTGTGATGATGAACCCACCGCCAGTGGAATACCACGATGAAGAAGTGGGCGTTACTTCTGAGGTTGGGTCTCTGGGCGAATCTCTAGTCATATATCGTCAAATATCAACCGACAGTGGTCAAAGCAGACGGTGTGAAGTGAAAGTTCTTGAACACGGCGACGGCTATGAGATCGTGGAGCGAAGAAAGCCCAAGATTGAACCTGTGAAACGAGACCCCGAGGAGGTAGCATTAGAAGATTCCGAGAAAATCGGAAGGTATTGGGTGAATCTGGTCAGAAAAGATTTGCCGAGGCATCACAAGTATTTTGTAGCCTATTACAAAAAGCAGATACAAGATGTAAAGCGAGTAGCAGAAATCTGCCAAAGAGAGGTCAAAAGTCGCAATGTGCGGTCATTGAAAGTAATGAAAGCTGCTCCCGTCAGAACGAGGAGGCTGGCTCGTGATATGATCATTTTTTGGAAGAAGTGGGACAAAGAACAGATTGAAGTTAGGAAAAGGGAGGAGAAGGAAGCTGCTGAAGCTCTCAAACGTGACCAAGAGCTCCGGGAAGCTAAGCGTCAACAGCAGCGACTCAACTTTCTTCTCACACAAACGGAGCTCTACAGTCATTTTATGCAAAACAAGACGTCTAACACGACTGCTGCACAAGCTTCCCAGGATGCTCTGCGTGATCTTGATACGAATATGAATTCGGAGGAAGGTTCTCTGAGTGTCGAGGATGCTGAAGAGGAGGCCGCTTTGAAAGAGGAAGCCGTGAGAGCAGCTAAATTAGCTGCTGCTCAGCAGAGAAATCGAACAAATGATTTTGATAGTGAGAGTGAAAGGCTTCGTACAGCCGCTGGTGGAGATGAGGCGGGTGAAGGAGCTGAAGACATGGATCTTCTACACCCGTCGACAATGCCAACTACTTCCTCCGTTCAGCAGCCCAAAATGTTCCAAGGCATTTTGAAAGAGTATCAGCTAAAGGGTTTGCAGTGGCTTGTTAATTGCTATGAACAGGGCCTAAATGGTATACTGGCAGACGAGATGGGTCTTGGCAAAACAATTCAAGCTATGGCTTTTCTTGGACATTTAGCGGAGGAGAAAAACATATGGGGTCCTTTCCTAGTAGTGGCGCCAGCATCTGTTCTGAACAATTGGGCAGACGAGTTGAACCGTTTTTGCCCTGACTTGAGGATCCTTCCTTACTGGGGAGCACTAAATGAAAGGATTGTGCTTCGAAAAAACATGAATCCTAATCGGCTTTATCGCAGGGAAGCAGGATTTCACGTGCTAATTACAAGCTATCAACTTCTTGTGTCGGATGAGAAATACTTTCGACGCGTGAAATGGCAATACATGGTCCTTGACGAAGCTCAGGCAATTAAAAGCGCCAGCAGTTTGCGATGGAAAACCCTTCTTAGTTTCAACTGTCGAAATCGTCTTCTTTTGACGGGAACGCCCATTCAAAATAGTATGGCCGAGCTCTGGGCCCTTTTGCATTTTATCATGCCTACTCTTTTTGATAGCCATGATCAGTTCAATGAATGGTTTTCGAAGGGGATCGAAGGACATGCAGAGCATGGTGGAACACTTAACGAGCACCAACTCACTCGCCTGCACTCAATTTTGAAACCATTCATGTTGCGGCGAGTGAAAAAGGATGTGATTACAGAAATGACCAGTAAGAAAGAAGTAATGGTTCCGTGCTATCTAAGTTCCCGACAACAGGCTTTTTATCGAGCCATCAAGAATAAGATATCAGTCGCTGACCTCTTTGGGAATGGGGGTCAGCTCAATGACAAGAAGGTTCTCAATCTTATGAATATTGTCATTCAGCTACGAAAGGTTTGTAACCACCCAGAGTTATTTGAACGGAATGAAGGACAGTCTTCAGTACACTTTGCAGCTGTACCACATTCTCTTCCTCCACCTCCTTTTGGAGAGTTGGAGGATGTCCATTATGCAGGAGGCCTCAACCCCGTGTCATTCAAGATTCCCAAACTTCTGTATAGAGATGGAATGCGCTGCTTGCCTACCGAGAGCTCTGGATCTACTCAAGGCTTCGTTGAGAAATGGCTTAAAGCTCGTTTAAGTGTTTTCTCACCAGACTATGTATATTCGTCTTCTGTGGGGGACAGTAAAAGAACTGATTTTGATGAGAGATCATCTCGCAGTGGAGCGTTTGGGTTTATTCGAATGCTCGGTCTTTCAGCTGCGGAAACTTCATTCCTAGCCAGGGCACCCTGTTTAGAAAGTTGCTTATTTGCCTTATTACAATTACAAGAATCATTTTCTGTAGAATGTTATGGGGACCTGAGCAAGATTAAAGTATTAAATGAACACAGAACAGCTGTTCATAGCAATGGGTCCTCAGCTGGGAACCACTTGAGAAGTTCTATGGATTCATTCGATAATGATGACAGCAGGGATGCAAAGACGAGATGTGTGCAGAGGATGTTAATGTTACCTAGTAGAGCGGATTCACATTTTTTGAGAACAAAGCATCCATCAGGTCCAGAATTAAAACCATTTGAATCACTCGTTGTTTTACATCAGGATAGACTACTTGGTACTACCAAACTGTTACGGTCCGTACGCAACTATATGCTACCAGTGCGAGCACCACAGATCGATGTATCGTGTTCAGATAGAGGATTTATGTTGCAAAGAACTGAGGAGCTGGAGAACCCAAAAATGAAACGGTTCTTAGTAGGGTTTGGTCGCACTTCGGAAAACAATGGACCTTCGATGCCTCTTCCTCTGTCTGCACCCATTGAAGAAAGTGATGTTCGTGCCCGTCTTATACAGCCTTTGTCAGCAATACCTTTTCGAATATTCGGCTCTGCTCCTCCATTGCAGAGTTTCGATTTCGCTAAGATGCTCACGGATTCTGGGAAACTGCAAACTTTGGATATATTACTGAAGCGCTTGCGGGCTGGAAACCATCGGGTGCTTCTTTTTGCTCAAATGACCAAGATGCTTAATATTCTGGAGGACTACATGAACTATCGAAAATACAAATACTTGCGACTAGATGGTTCATCCACCATTATGGACCGTCGTGACATGGTTAATGACTTTCAACATCGGTCGGACATTTTTGTGTTCTTGTTAAGCACGAGAGCTGGGGGACTTGGAATCAATCTAACAGCTGCTGATACAGTTATCTTTTATGAAAGTGACTGGAATCCAACTATGGATCTTCAAGCCATGGATAGAGCCCATCGTCTTGGGCAAACGAAGGAGGTTACAGTGTACAGGTTAATATGCACAGGTACGGTTGAAGAGAAGATAATGAAACGGGCTAGCCAGAAGAACACTGTGCAACAATTGGTTATGACTGGAAATAATGCTTCGCAAGGTGATGTCTTGGAGGCAGAAGAGGTGGTCTCACTCTTATTGGACGATGCAGAGCTGGAAGCAAAGATGAAAGAGCAAGTCTCTAAGCAAGTCGATAAGCACGGGAGACGGAAGAAAGGATGGGCTGTAGCTGGTTCTTTAAAAGGAGTACGGTTGGATGCTGAGGGCGGTGGTGCCTCACTTGACGATGTTAACACAGCTTTGACAGGTATTGTTGAAAGTGGCGGGGCAGCCACAGTACCAGATGCTGCGCCAGATTCTAATGCTTTGGCAGTACCTGCTAATGGCAGAAAGAGACGAAGAAATGGAGAGGAAAAACCACCCAAACCTCCCAAAATGCCAAAGCCTGCGAAGGAGCCTAAGCCTCCAAGATCTCGCAAAGAACCTAAGCCAGTGAGGCCTCCGAAAGAGCCTAGAGAGAGAAAACCTAGAGAACCTCGTGATCCTACAACCAAACCTAGACAGCGATTCAAGAAAGGGTCATTAGGTCCTAGTGAAAGTAACTTTCCATCACCTTCTCTTGCTGGAGAGGAGAATGGGGATGGTTGTGCTGGGTCGTCTGTACCAGAAAATGGCTACTCGTTAGACGGAGGTGAAAATCATAGAGTTAATGGTGATCGTGCAGGTAATTCTAGGCCTAGCACTGGTAGCAATGATTCTTTAGACAAGGTGGTTTAA
Protein Sequence
- >Pp3c1_3340
MWVRSPENGSPAQEYDSPSRSQVSDETDYSQDDWRINGHAELEAERHAVIRPEMTLKRKRVPIEAYAGSNSAPRHDADSNDEEEEEDDYDVRQDYYEESHPNRGDSYDEPAKDFYHDQSGGGLYREPSAEGSYREHYQGGSYLEQSAGGSYHEQSGGDSYREHSDEHSYREQSEGGSYRDQSEERSYHEQSGGSDHEIGPQRPQSHQKAFHLKSAASLPSNMEKGPGTYLVLEDGVEFQIPQYYDELALSLHLPPFNALQIEEKVVYGRLKATAFFAIMDADPWAQLWRKQYEMGECRGKCFDKENKRRLLEKRRFGLQVIDSSVMMNPPPVEYHDEEVGVTSEVGSLGESLVIYRQISTDSGQSRRCEVKVLEHGDGYEIVERRKPKIEPVKRDPEEVALEDSEKIGRYWVNLVRKDLPRHHKYFVAYYKKQIQDVKRVAEICQREVKSRNVRSLKVMKAAPVRTRRLARDMIIFWKKWDKEQIEVRKREEKEAAEALKRDQELREAKRQQQRLNFLLTQTELYSHFMQNKTSNTTAAQASQDALRDLDTNMNSEEGSLSVEDAEEEAALKEEAVRAAKLAAAQQRNRTNDFDSESERLRTAAGGDEAGEGAEDMDLLHPSTMPTTSSVQQPKMFQGILKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLGHLAEEKNIWGPFLVVAPASVLNNWADELNRFCPDLRILPYWGALNERIVLRKNMNPNRLYRREAGFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSASSLRWKTLLSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTLFDSHDQFNEWFSKGIEGHAEHGGTLNEHQLTRLHSILKPFMLRRVKKDVITEMTSKKEVMVPCYLSSRQQAFYRAIKNKISVADLFGNGGQLNDKKVLNLMNIVIQLRKVCNHPELFERNEGQSSVHFAAVPHSLPPPPFGELEDVHYAGGLNPVSFKIPKLLYRDGMRCLPTESSGSTQGFVEKWLKARLSVFSPDYVYSSSVGDSKRTDFDERSSRSGAFGFIRMLGLSAAETSFLARAPCLESCLFALLQLQESFSVECYGDLSKIKVLNEHRTAVHSNGSSAGNHLRSSMDSFDNDDSRDAKTRCVQRMLMLPSRADSHFLRTKHPSGPELKPFESLVVLHQDRLLGTTKLLRSVRNYMLPVRAPQIDVSCSDRGFMLQRTEELENPKMKRFLVGFGRTSENNGPSMPLPLSAPIEESDVRARLIQPLSAIPFRIFGSAPPLQSFDFAKMLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVNDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTMDLQAMDRAHRLGQTKEVTVYRLICTGTVEEKIMKRASQKNTVQQLVMTGNNASQGDVLEAEEVVSLLLDDAELEAKMKEQVSKQVDKHGRRKKGWAVAGSLKGVRLDAEGGGASLDDVNTALTGIVESGGAATVPDAAPDSNALAVPANGRKRRRNGEEKPPKPPKMPKPAKEPKPPRSRKEPKPVRPPKEPRERKPREPRDPTTKPRQRFKKGSLGPSESNFPSPSLAGEENGDGCAGSSVPENGYSLDGGENHRVNGDRAGNSRPSTGSNDSLDKVV