Information report for Pp3c1_24960
Gene Details
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Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Actinidia chinensis: CEY00_Acc15976
- Beta vulgaris: BVRB_1g001910
- Citrullus lanatus: Cla97C05G079940
- Glycine max: Glyma.03G262100, Glyma.19G261200
- Gossypium hirsutum: Gohir.D07G138400
- Juglans regia: Jr07_10040
- Manihot esculenta: MANES_05G015200
- Medicago truncatula: Medtr7g118350
- Musa acuminata: Ma08_g12120
- Populus trichocarpa: POPTR_002G181400v3
- Prunus avium: Pav_sc0001046.1_g510.1.mk
- Prunus persica: PRUPE_2G200900
- Rosa chinensis: RchiOBHm_Chr1g0361361
- Vitis vinifera: VIT_15s0048g02380
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: A0A7I4BUB4
- EMBL: ABEU02000001
- AlphaFoldDB: A0A7I4BUB4
- InterPro: IPR000999 , IPR001650 , IPR005034 , IPR014720 , IPR027417 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF52540 , SSF54768 , SSF69065
- PROSITE: PS50137 , PS50142 , PS51194
- Gene3D: 1.10.1520.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- CDD: cd00593 , cd19869
Sequences
CDS Sequence
- >Pp3c1_24960
ATGAGGCAAGCAGATGTGATTCGCAACGGCACAAAGTTTAGTGTTGGTCACTACTGCGGAGAGATGGGTCAAGATTTTGGGACGCCCGAGGGTGGCAGCGAGAATTTGATACCAAAGATGCATAGCATTGTAAAAATGGAAGCCATTCATCTACTTATTCTCGATGAGTGCCACCATGCCGTGAAGAAACATCCCTATTCTTTGGTGATGTCTGAATTCTATCTTATTACACCTAAAGATAAGCGACCGTGTGTCTTTGGGATGATAGCATCGCCTGTGAACCTCAAAGAAAGCAAGTTGGATTCGATAGTGTGTACAATCAGGGATCGGAAAGAGCTCGAAAAGCACGTGCCTTTGCCGTCAGAGACAATGATTCTGTACGATAAGCCGGCCTTGCTTTTCTCGTTGCGGAAAGAGAGAAAACAGATGGAGGCCACTGTAGAAAAGGCTGCTAATGCAAGTGTCAGACGCAGCAAATGGAAATGCATGGGCGCTCGGGATGCGGGTGCTAAAGAGGAACTGCAACTTAGTGTCGCGGAGAGAACGGAAAGCGATGGCGCAGCTAGTCTTTCTCAAAAGCTTAGAGCCATTACCTATGCACTTGATGAATTAGGTCAATGGTGTGCTTACAAGGTTTCGCTGGGATATCTGACAAGTCTTCATAATGATGAAAGGGTTAATCATCAGTTAGACGTGAAGTTTCAAAAGTTGTACTTGAAGAAGGTTTGTACTCTTCTGCGATGCAGTCTACGTGAAGGTGCTGCAGGCAGTAGAGACCCTGCTGAACATGTAGGATGTGCCGATTTTGAGGATGACAAAATACAAGAACCTACGGATGTGGGAGAAGGAGAGCTTCCCGATTCTCATGCGGTATCAGTGGGTGAACATTTGGATGAGATTCTTGGGGCCGCTGTAGCAGATGGAAAAGTGACTCCGAAGGTGCAGTCTTTAATTAAGGTTTTAATAGGTTATCAGCATACGGATGATTTCCGAGCTATTATATTTGTGGAGCGAGTAATCGCAGCACAGGTGCTGCCCAAGGTGACGTTGCTGGTGGCTACAAGCGTGGCCGAGGAGGGATTAGATATTCGCCAATGTAATGTGGTCATCCGTTTTGATCTTGCTAAAACCGTGTTAGCCTACATCCAGTCTCGTGGTCGTGCTCGGAAGCCTGGTTCAGATTATATTTTAATGCTTGAGAGAGGAAATCTGCAACATGAGGCGTTTTTTCGGAATGCAAAAAATAGTGAGGAGACTTTACGGAAGGAGGCTATTGAAAGAACTGATCTGGGTGAAAAACGGGAGAATGCGATTCTGGCCTCCATTGACATTGGGGAAGGGGAGATTTACCAGGTGCCAGCCACTGGGGCAGTCGTGAGCATGAACTCAGCTGTAGGTCTTATTCACTTCTACTGCTCTCAGCTTCCCAGTGACAGGTATTCTCTCTTGCGTCCTGAGTTCATTATGAACAAAATTGAGGATCAAAGAGGTGCTATAAGATACTCGTGCAGACTGCAGTTGCCTTGCAATGCTCCGTTTGAAGCTGTGGAAGGCCCAGAATGTAATTCTATGCGAGGAGCGCAGCAGGCTTGCAAAAAATGCACGAAATGGGGGCATTCACGGACATGCTATTATCTAATAAAGGAAGTAGGGAAGAAGCTGCTAAGTTGGAGGGGCGATCGGATAGTGGCTGAGAAAGATTCGGATACAAAGGAAGGCAGCAAGTGTGAAAATGTTGGCTTCTCGAGAGACAGCCTTTTGACCGAGACATCAGACTTTACCTTACTTGTCGGCCAACAGCTTCATGACGAGATTTCTTTACCGAACCCGACTTTACTGATCACGATGAGCTGGAAAAAGAGGGATTTGGATGCAATTCGAAGGTTTAGAAAGCGGCATTGTTGCTCTAATTCCCAGTTGACTGAGCTCAAGAGTTTTCATGTGAGGCTTATGAGCATTGTTTTAGACGTAAATGTCGAGCCGGCAACAACTCGTTGGGATCCCGCCAAGGCGTATCTCTTTGCTCCAGTTCTGCATAAGGATGCCTCCGATCCTAAAGACTTGGTGGACTGGGTCGTTATGAGAAGGACGATCGAGACTGATTCATGGAGTAATCCCCTCCAGCGCGCATCACCTGATGTGAACTTGGGGACTGACGAACGTGCTCTTGGTGGGGATCGTAGAGAGTACGGGTTTGGAAAACTGCGATGTAGTCTGGCCTTTGGGCAAGGAGCGCATCCAACGTATGGTGCTCGTGGCGCTAAAGCTCAATTTGATGTTGTGAAAGCCACAGGTCTACTTCCTACCTCAGACATGGTGGAGGAGACAACTGTGCAGGAAGTACCTCCCGAGGGTAAGCTGTTGATAGTGGATGGTTTTGTTGAAGTTGAAGTATTGGTGGGAAGGATTGTTACTGCGGTGCATTCTGGGAAGAGGCTTTATGTGGATTCGGTGTTGGCGTTGACGGCTGCGTCTTGTCAAGAGACATTCAGCTATGAGCGTGCAGAGCTTTTAAGCGACGCGTACCTCGAATGGGTTGTTAGTCATCGATTGTTCCTGAAGTTCCCTAGTAAACATGAGGGGCAGCTTACACGTATGAGACAGAAAATTGTCAGCAATTCCGTTCTGTATCAACATGCCCTAGAGAAAGGTCTTCAGAGTTACATTCAGGCCGACCGCTTTGCACCGTCCCGGTGGGCCGCACCGGGAGTGCCTCCTGCATTCGATGAGGACTTGAGAGATGGCGATGATTCGGATAAGGAGTCGAAACCTGAAGTTGAAAGAGAAGTAGTGGAGATTGTCGAAAGTGAAAATATGGAAGACGGTGAAATTGAAGGTGATTCCGGTTCCTATCGAGTGCTTTCGAGTAAAACCTTGGCAGACGTGGTAGAGGTATTCATAGGAATGTATTATGTGGAGGGGGGGGGGGGAGGCTGCTACTCACTTCATGAACTGGGCATTCCTGTGGAGTTTGATGACGTGGAGACAGACTTAGCCACAGGTGGCTGCCAAGTTCCTGAAACCGTTATGCGGAGCATAGACTTTTCATCATTACAAAAAAACGTTGGCCATGAATTTCGTGAACGAAGTAGGTTGACCGATTTGCGAGCTGCTGCAGTGAATAACGAAAATTTCGCACGTGTTGCTGTGAAGCACTCGTATCATCTTCATTTGCGGCATGGTTCAACCGCTTTAGAAACTCAGGTTTTTGAGCCTTTGTTGCAGCCCATGGTGTCCCCAGAGACATTGCCGATCCATCCAGTACGAGGGTTGCAGGAGCGTTGTCAACAAGAAGCTGAAGGTCTGGAGTACAAAGTGTCTCGTGCAGAGAGCGTTGCGACCGTGGAGGTGTATGTAGACGGTGTACAGATAGGTTCTACGCAAAGTGCTCAGAAGAAAATGGCCCAAAAATTAGGTGCTCGTAATGCGTTGGTCAAATTGAAGGATAAGGAGGTGATCAAAGTGAAAGCTGAGGCAGAGAATGGTGACTTGAACGCTGGAAAATCGAGCAAGAACGGTCACACTAACTTCACTCGCAAAACAATTAATGACCTTTGTCTTAAGAGACAGTGGCCGATGCCACAGTACAAATGCGTTCTGGAGAGCGGACCAGCGCATGCTAAGAAGTTTACGTTCTCTGTACGGGTTCTGACCACCACTGATGGATGGACCGAAGAATGTGTTGGGGAGCCTATGGCGAGTGTGAAGAAAGCTAAGGACTCTGCAGCTCTTGTACTTTTGGCTGCTTTGAGACGATCATATCCTTTGCGTAATAATATTATAGACTGCTAA
Protein Sequence
- >Pp3c1_24960
MRQADVIRNGTKFSVGHYCGEMGQDFGTPEGGSENLIPKMHSIVKMEAIHLLILDECHHAVKKHPYSLVMSEFYLITPKDKRPCVFGMIASPVNLKESKLDSIVCTIRDRKELEKHVPLPSETMILYDKPALLFSLRKERKQMEATVEKAANASVRRSKWKCMGARDAGAKEELQLSVAERTESDGAASLSQKLRAITYALDELGQWCAYKVSLGYLTSLHNDERVNHQLDVKFQKLYLKKVCTLLRCSLREGAAGSRDPAEHVGCADFEDDKIQEPTDVGEGELPDSHAVSVGEHLDEILGAAVADGKVTPKVQSLIKVLIGYQHTDDFRAIIFVERVIAAQVLPKVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNLQHEAFFRNAKNSEETLRKEAIERTDLGEKRENAILASIDIGEGEIYQVPATGAVVSMNSAVGLIHFYCSQLPSDRYSLLRPEFIMNKIEDQRGAIRYSCRLQLPCNAPFEAVEGPECNSMRGAQQACKKCTKWGHSRTCYYLIKEVGKKLLSWRGDRIVAEKDSDTKEGSKCENVGFSRDSLLTETSDFTLLVGQQLHDEISLPNPTLLITMSWKKRDLDAIRRFRKRHCCSNSQLTELKSFHVRLMSIVLDVNVEPATTRWDPAKAYLFAPVLHKDASDPKDLVDWVVMRRTIETDSWSNPLQRASPDVNLGTDERALGGDRREYGFGKLRCSLAFGQGAHPTYGARGAKAQFDVVKATGLLPTSDMVEETTVQEVPPEGKLLIVDGFVEVEVLVGRIVTAVHSGKRLYVDSVLALTAASCQETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVEREVVEIVESENMEDGEIEGDSGSYRVLSSKTLADVVEVFIGMYYVEGGGGGCYSLHELGIPVEFDDVETDLATGGCQVPETVMRSIDFSSLQKNVGHEFRERSRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPLLQPMVSPETLPIHPVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNALVKLKDKEVIKVKAEAENGDLNAGKSSKNGHTNFTRKTINDLCLKRQWPMPQYKCVLESGPAHAKKFTFSVRVLTTTDGWTEECVGEPMASVKKAKDSAALVLLAALRRSYPLRNNIIDC