Information report for Pp3c12_4000
Gene Details
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Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Actinidia chinensis: CEY00_Acc17948
- Citrullus lanatus: Cla97C06G128240
- Cucumis melo: MELO3C026154
- Cucumis sativus: CsGy1G000010
- Glycine max: Glyma.04G203000
- Juglans regia: Jr09_00040, Jr02_00090
- Musa acuminata: Ma06_g09860, Ma10_g12510
- Nicotiana attenuata: A4A49_34164, A4A49_00147
- Populus trichocarpa: POPTR_015G109300v3
- Solanum lycopersicum: Solyc03g118010.3, Solyc03g118020.3
- Solanum tuberosum: PGSC0003DMG400014229
- Vitis vinifera: VIT_00s0283g00020, VIT_14s0068g00720
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: A9TJW2
- RefSeq: XP_001778901.1 , XP_024390706.1
- EMBL: ABEU02000012
- OMA: ARCADHH
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF2
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- OrthoDB: A9TJW2
- CDD: cd20443
- eggNOG: KOG2039
- STRING: 3218.A9TJW2
- HOGENOM: CLU_005966_2_0_1
Sequences
CDS Sequence
- >Pp3c12_4000
ATGGCGACCGGATGGCTCAAAGGCACCGTGAAGGCGGTACCTTCGGGGGATTCGCTGCTCATCATGGGAAGCGTCAAGGGTGGCCCGCCGCCGGAAAAGACCGTCACTCTAGCCGGCCTCATTGCACCCAAATTGGCCCGTAGGGATGGTAGGGACGAGCCCTTCGCATGGGACAGTCGGGAGTATCTTCGCAAGATGTGCGTTGGAAAGGAGGTCACTTTCAAGGTAGATTACGTTGTGCCTTCGATTAATCGAGAGTTTGGGACAGTCATTATGGGCGGAGTGAACGTTGGATATGAGGTCGTCGCCAATGGTTGGGCCAAGGTACGTCAGCAGGGAGGTCAAAACAGTGAGGTGCCTCCGGCAGTCATGACCGAATTGAACGAGCGGGAAATGAAGGCCCAGACTGAAGGCCTCGGCATTTGGAACAAGACTCCGGGTGCATCAGAAGCCTCAATTCGAGAGTTGCCTCCATCTGCAATTGGTGATTCCGCTGGATTTGATGCACTCGGTTTGGTGGAGTCTAGCAAGGGGAAGGTTCTGCCAGCTATTGTGGAAGCAGTGAGAGATGGCAGCACTGTGAGGGTGTACCTTCTTCCCGACTTCCAATACGTGCAAGTTTACTGTGCTGGGATTCAGGCACCTTCAATGGGTAGGCGTTCTCCTGTGGCGGATACTTTTGCCCAGGAAGAGGCCAAATCAAGGGGCGAGGAATCGAAAACCGGAGAGGCAGGAGAGGAACCTGCAGCACCCTTGACAACTGCACAGAGGCTTGCAGCTTCCAACAGCGCTGCTTCTCACGCTGAGATCCTTCCCGACCCTTACGCAAAAGAAGCTAAGCATTTCACTGAAGTGCGGGTGTTAAATAGAGATGTGAGAATCGTGCTAGAAGGGGCTGACAAGTTCAACAATCTCATTGGTTCCGTTCACTATTCGGAAGGAGACAACGTTGTGGACCTGTCCTTGGAGCTGGTGAAGCATGGGTTTGCGAAAGTGGTTGAATGGTCAGCTAACATGATGGAAGAGGTCGCCAAGAGACGTCTGAAGACTGCCGAATTGCAAGCTAAGAAAGATCGTCTGAAGATTTGGACAACATACGTGCCTCCTGCGACGAATTCTACAGCCATTCTTGATGTAAATTTCTCCGGCAAGGTGATTGAAGTTGTGAGTGGAGACTGCATCGTGGTCGCAGATGATGCTGCACCCTATGGAACCCCAGCAGCTGAGAGGCGTGTGAACTTGTCTAGCATCCGGGCACCTCGGGTCGGAAATCCGAAGAAGGATGAGAAACCTGCGGCCTATGCCCGTGAAGCAAAAGAGTATCTCCGCGGTCTCTTAATCGGACAACAGGTGAATGTTACCATGGAGTACTCACGGAAGTTTGGGGCCACAGATGGTCCAACACCAATGCCTGTCGTGCCAGGTTCCGACCGTACCATGGACTTCGGGTCTGTATTTCTGGTGTCGGCTCCCAAGGGCGAGGTTGCTGACTTGACGCCTGCATCTGTCTCTGGGCAGCCACAAGGTGCCAACGTTGCGGAAATGCTTGTGGTGCGGGGTTTCGCCACTGTGGTTCGACACAGAGATTTTGAAGAGCGGTCGAACTTCTACGATGCTCTTTTGGCGGCCGAGTCTAAGGCTGTTAAGGGCAAGAAAAAGATTCATTCGCAGAAGGATTCACCAGCGACTCACATTAACGACCTTTCTCTACAGGGGACCACCAAGAAAGCTATTGCGTTTCTGCCGTTTTTGCAACGGCAAAGGAGGCTTCCTGCAATCGTGGATTACGTGCTGAGTGGACATCGGTTTAAGTTGTTGATCCCGAAGGAAACGTGTGCAATTGCTTTCTCCCTATCAGGTGTCCGTTGCCCAGGCAGAGGGGAGCCGTACTCGGAGGAGGCTATCTCTTTCATGCGCAGAAGGATCCTTCAGAGGGATGTGGAGATTGAGATTGAGACGGTGGATAAGACTGGTACATTCTTGGGGAGCTTGTGGGAAGGCAAAGAGAACGTTTCAGTGGCGTTGCTGGAGGCTGGTTTGGCTAAGCTTCATCCAAGTTTCAGCACTGATAGGACAGTCGAAGGACACTTGTTGCTTCGGGCTCAGGAGAGTGCTAAGAGTAAGAACTTGAAGGTATGGGAGGGTTTTGTGGAAGGTCAAGAAGAGGCGAACAGAGCTGCTGCTGCTGGAGTGAAGGCCACTGAGGCAAAAGCAGTTCCGGTCTGTGTGGCTGATGTTTTGGGTGGGGGCAAATTTTACGTTCAAACAGAGGAGGCCAAAGTACTTATGATCCAGAAAACACTTGAAGGCTTGAATCTGAAGGACAAGGCCTCGCCACCAGGCGTTTTCACTCCCCAGAAGGGCGAGCTGGTGATCGCCCAGTTTTCTAGTGATAACTCATGGAACCGAGCGTTGATTGTAAATTCACCTCGACAAGGAACTGCAATAACAGCGAAGTCATTGTATGAAGTGTTCTACATTGACTACGGAAACCAGGAGTCGATTCCACTTTCTAGGCTGCGACCACTAGACCCTTCTGTATCATCACCTGCTCAAGGCTTGGCGCAACTATGCAGACTGGCTCATATTAGGGTCCCAGAGTTGGAGGATGATTTTGGCGAGGAGGCAGCAGAGTACCTATCGGACTTAGTAGCTAACAAGTCTCTGCTTATGAAGGTAGAGGACAAGGATACTACTGGTGGCAAGGTGAGAGGAAAAGGAACAGGAACTTGCTTGATCGTCACTTTGATCGACCCAGCTTCGAGCAAGACAATCCAATCATTGATGCTTGAGAATGGGCTGGCAAAGCTGGAGAAGATCAACAGGTGGGACACACCGGAGAAGAAAAACATCCACGCCGAGTACGAGGAGTACCTTAAGGAGGCAAAAAAGAACCGGCTGAACATGTGGAGCTATGGAGACGTGGAGTCTGACGAGGAGGACACGCCACGCAGGCCAATGGGACGCCGTTAG
Protein Sequence
- >Pp3c12_4000
MATGWLKGTVKAVPSGDSLLIMGSVKGGPPPEKTVTLAGLIAPKLARRDGRDEPFAWDSREYLRKMCVGKEVTFKVDYVVPSINREFGTVIMGGVNVGYEVVANGWAKVRQQGGQNSEVPPAVMTELNEREMKAQTEGLGIWNKTPGASEASIRELPPSAIGDSAGFDALGLVESSKGKVLPAIVEAVRDGSTVRVYLLPDFQYVQVYCAGIQAPSMGRRSPVADTFAQEEAKSRGEESKTGEAGEEPAAPLTTAQRLAASNSAASHAEILPDPYAKEAKHFTEVRVLNRDVRIVLEGADKFNNLIGSVHYSEGDNVVDLSLELVKHGFAKVVEWSANMMEEVAKRRLKTAELQAKKDRLKIWTTYVPPATNSTAILDVNFSGKVIEVVSGDCIVVADDAAPYGTPAAERRVNLSSIRAPRVGNPKKDEKPAAYAREAKEYLRGLLIGQQVNVTMEYSRKFGATDGPTPMPVVPGSDRTMDFGSVFLVSAPKGEVADLTPASVSGQPQGANVAEMLVVRGFATVVRHRDFEERSNFYDALLAAESKAVKGKKKIHSQKDSPATHINDLSLQGTTKKAIAFLPFLQRQRRLPAIVDYVLSGHRFKLLIPKETCAIAFSLSGVRCPGRGEPYSEEAISFMRRRILQRDVEIEIETVDKTGTFLGSLWEGKENVSVALLEAGLAKLHPSFSTDRTVEGHLLLRAQESAKSKNLKVWEGFVEGQEEANRAAAAGVKATEAKAVPVCVADVLGGGKFYVQTEEAKVLMIQKTLEGLNLKDKASPPGVFTPQKGELVIAQFSSDNSWNRALIVNSPRQGTAITAKSLYEVFYIDYGNQESIPLSRLRPLDPSVSSPAQGLAQLCRLAHIRVPELEDDFGEEAAEYLSDLVANKSLLMKVEDKDTTGGKVRGKGTGTCLIVTLIDPASSKTIQSLMLENGLAKLEKINRWDTPEKKNIHAEYEEYLKEAKKNRLNMWSYGDVESDEEDTPRRPMGRR