Information report for POPTR_013G081300v3
Gene Details
|
|
Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Gossypium hirsutum: Gohir.A08G223200, Gohir.D08G243400
- Hordeum vulgare: HORVU7Hr1G066930
- Juglans regia: Jr13_27790, Jr13_27780, Jr16_02560
- Manihot esculenta: MANES_09G124300
- Musa acuminata: Ma04_g12340, Ma01_g08850
- Nicotiana attenuata: A4A49_21987
- Prunus persica: PRUPE_2G324300
- Rosa chinensis: RchiOBHm_Chr1g0383911
- Sesamum indicum: SIN_1013829
- Solanum lycopersicum: Solyc08g076030.3
- Vitis vinifera: VIT_16s0039g02410
Gene Resources
- Pfam: PF00400
- UniProt: U5FS03
- EMBL: CM009302
- AlphaFoldDB: U5FS03
- OMA: RLVHKPF
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR015943 , IPR027728 , IPR036322 , IPR048419 , IPR054080 , IPR054532 , IPR056154
- PANTHER: PTHR44083 , PTHR44083:SF5
- SUPFAM: SSF50978
- PROSITE: PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
- OrthoDB: U5FS03
- STRING: 3694.U5FS03
Sequences
CDS Sequence
- >POPTR_013G081300v3
ATGTCTTCCTTAAGCAGGGAACTGGTGTTTCTGATCTTGCAGTTCTTGGACGAGGAGAAGTTCAAGGAAACTGTTCATAAGTTAGAGCAAGAGTCTGGTTTTTTCTTCAATATGAAACATTTTGAGGATCAAGTTCAGGCTGGTGAATGGGATGAGATTGAGCGATATTTATGTGGATTCACGAAGGTTGAAGATAACCGTTACTCTATGAAGATATTCTTCGAAATAAGAAAGCAGAAATATTTGGAGGCTCTTGATAGACAGGATCGGGCAAAGGCTGTTGAGATTCTTGTTAAGGACCTGAAGGTTTTTGCATCCTTCAATGAAGAACTTTTCAAGGAAATAACTCAGTTGCTTACACTTGATAATTTCAGGCAAAATGAGCAGCTTTCGAAATACGGGGACACAAAATCAGCTCGAAATATCATGCTTGTCGAACTTAAAAAGCTGATTGAAGCAAACCCGCTGTTTCGAGACAAGCTTACTTTCCCACCCTTCAAAAGTTCGCGACTTAGAACGTTAATAAACCAGAGTCTTAATTGGCAGCATCAACTTTGTAAGAATCCTCGTTCAAACCCTGACATCAAAACTCTATTTATTGATCATTCTTGCACTCCTACAACTGCTAATGGGGCTCATCCACCTCCTCCCTCGAACACCCCCCTTGTGGGACCGATTCCTAAGGCTGGGGCATTCCCCCCTATTGGAGCCCATGGCCCTTTTCAACCTGTTGTTTCCCCAACTCCGGGTGCTATTGCTGGTTGGATGTCGGCCAATAATCCTTCTTTACCACACCCTGCTGTGGCAGCGGGCCCCCCTACTCTTGTGCAGCCTTCTAGTGCAGCTGCCTTCTTGAAACACCCAAGGACTCCCACAGGAATGACAGGAATGAATTATCAGTCAGCTGATTCAGAACACTTGATGAAGCGGATGCGCCCTGGCCAATCTGAAGAGGTTTCCTTTTCTGGTATAGCACATACTCCCAATATCTATTCCCAAGATGACCTTCCCAAAACTGTTGTACGGACCCTTAACCAAGGATCCAATGTCATGAGCATGGACTTTCATCCACAGCATCAAACCATCCTGCTAGTTGGGACAAATGTTGGTGACATTAGCCTTTGGGAAGTTGGCTCCCGGGAAAGGTTGGCACATAAACCTTTCAAAGTTTGGGATCTCTCTGCTTCTTCAATGCCACTGCAGACAGCATTGTTGAATGATGCTGCAATATCTGTAAATCGATGTGTGTGGGGGCCAGATGGACTAATGCTTGGTGTTGCATTTTCGAAACATATAGTGCAAATATATACTTACAATCCAACTGGAGAACCGAGGCAGCATTTAGAGATTGATGCCCATGTCGGTGGTGTGAATGATATTGCATTTGCTCATCCCAACAAACAACTATGCATTGTCACATGCGGTGATGACAAGATGATTAAGGTTTGGGATGCTGGAGCAGGAGGCAGACAATATATATTTGAAGGCCATGAAGCGCCTGTGTATTCGTTGTGTCCCCATTACAAAGAAAATATCCAGTTTATTTTTTCAACAGCAATTGATGGGAAGATTAAAGCTTGGCTATATGATTCTTTGGGATCTAGAGTGGACTATGATGCTCCTGGACTTTGGTGCACCATGATGGCATATAGTGCAGATGGGACTAGGCTCTTCTCTTGTGGAACAAGTAAAGAAGGTGAATCTCACCTAGTTGAGTGGAATGAGAGTGAAGGATCTATCAAACGAACATATTTGGGTTTCAGGAAGCGTTCTTTAGATGTTGTTCAGTTTGACACAACAAGGAGCCACTTCTTAGCTGCTGGTGATGAGTTTCAAATTAAGTTTTGGGATATGGATAATACAAACATGTTGACAGCTGTTGATGCAGATGGGGGGTTGCCTGCTAGTCCTAGACTGAGATTTAACAAGGAAGGTTCATTGTTGGCAGTCACAACTAGTGACAATGGTATTAAAATTCTAGCCAGTAGTGATGGATTGCGCTTGATAAGGATGTTGGAGAGCAGGGCTATTGATAAAAGTCGAAGCCCGTCAGAACCAATCAACTCTAAGCCACTGATTGTTAACGCACTAGGCTCTGTGGCAAATGTTTCTTCTGGCCTCGCATCATCACTGGAACGCTCAGATAGAATCCAGCCTGCAGTTTCTATTGGCAATCTTGGTACCATGGACAACAGTAGGCTTGTTGATGTTAAACCAAGGATTTCAGATGATACAGACAAATTGAAAAGCTGGAAGAGTGATATTGTAGATTCATCTCAGCTAAAAGCTTTGCGGTTGCCTGACTCCATAGTAGCTGGCAAGGTTGTGCGGCTGATTTATACTAACTCAGGGCTGGCTCTATTGGCCCTTGCCTCTAATGCTGTCCACAAGCTGTGGAAATGGCAGCGCAGTGAAAGAAATCTGACAGGAAAGGCTACTGCATCAAATGCACCACAGTTGTGGCAGCCTCCTAGTGGAACTCCCATGACTAATGATATAAATGAGAGCAAACCAGCTGAAGAATCTGCTGCATGCATTGCACTATCCAAAAATGATTCTTATGTCATGTCTGCCTCTGGTGGGAAGGTCTCTTTGTTCAACATGATGACATTCAAGGTCATGACAACATTTATGTCCCCACCTCCTGCAGCCACTTTTTTAGCATTCCATCCTCAAGATAATAACATTATTGCAATTGGCATGGAGGATTCTACTGTGCAAATATATAATGTCAGAGTTGATGAGGTCAAAACTAAACTCAAGGGCCACCAGAATCGAATAACAGGACTTGCTTTTTCACAGAGTTTAAATGTGCTGGTGTCTTCTGGGGCTGATGCACAGTTGTGTGTCTGGAGCATTGATGGATGGGAGAAAAAGAAAATGAGGTTCATTCAAGCACCACCTAGTCGTCAATCCCCTTTGGTAGGCGAAACTAGAGTCCAATTTCATAATGACCAAGCACATCTGTTGGTTGTCCATGAAAGCCAAATTGCCATCTATGACAGCAAACTTGAATGTTCGCGCTCATGGTCTCCTAAAGACACCCTTGCGGCTCCCATTTCAAGTGCAATATATTCAAGTGATGGTTTCTTGGTTTATACGGGTTTTTGTGATGGTGCTGTTGGAGTTTTTGATGCGGACAGCTTAAGAATCAGATGCCGAATAGCACCTTCTGCTTATATACCTTCACACCCTGCAGGCAGCACTGCCTATCCTTTGGTTATAGCTGCTCATCCATCTGAGCCCAATCAGATTGCACTTGGTATGAGTGATGGTGCAGTACATGTGGTTGAGCCATCTGATGTGGAGATGAAGTGGGGTGGCCCATCCTCTCAAGATAACGGGACCCATCCGTCTAATACATCGAATCCTTCTCCAAGTGGTCACCTGTCAGAGCTCCCTTCCAGGTGA
Protein Sequence
- >POPTR_013G081300v3
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLNWQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGPFQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQSADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPDGLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDAPGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTTRSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPAVSIGNLGTMDNSRLVDVKPRISDDTDKLKSWKSDIVDSSQLKALRLPDSIVAGKVVRLIYTNSGLALLALASNAVHKLWKWQRSERNLTGKATASNAPQLWQPPSGTPMTNDINESKPAEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIGMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKKKMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWSPKDTLAAPISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGSTAYPLVIAAHPSEPNQIALGMSDGAVHVVEPSDVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSELPSR