Information report for POPTR_012G092400v3
Gene Details
|
|
Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D09G2376, Gohir.D09G245700, Gohir.A09G244800, Gh_A09G2168, Gh_D07G0545, Gohir.D07G058400, Gohir.A07G054000
- Manihot esculenta: Manes.06G114100.1.p, MANES_06G114100, Manes.14G055900.1.p, MANES_14G055900
- Ricinus communis: 30147.m013814
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A2K1YB81
- EMBL: CM009301
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- SMR: A0A2K1YB81
- STRING: 3694.A0A2K1YB81
Sequences
CDS Sequence
- >POPTR_012G092400v3
ATGGCGGCTCCAAGTGGGTTAAGTCCAGAACCACCACAACCACCAACAAGTACAGAAGTATGTCAATGGCTAAAGAACTTACCTTTAGCACCTGAATACCGTCCAACACAAGCTGAATTCCAAGATCCAATTGCTTACATTTTCAAAATTGAAAAAGAAGCTTCTCAATATGGAATCTGCAAAATTATCCCTCCTGTCTTACCCTCTGCTAAAAAAACCACTCTTTCCAACCTCAACCGCTCTCTCTCCGCCCGTAACGGTGACTCTTCTGCCCCCACATTCACCACACGGCAGCAGCAGATCGGATTCTGCCCCAGGAAACCTCGCCCTGTTCAAAAACCAGTGTGGCAGAGCGGTGAGACCTACACATTTCAAGAATTTGAAACCAAGGCTAAAAGCTTTGAGAAGAATTATTTGAAGAAGTTCTCTAAGAAGGGAGGTCTTTCTCCATTAGAAATTGAAAACCTTTATTGGAAAGCTACTTTAGATAAGCCTTTTGCTGTAGAATATGCTAATGATATGCCTGGTTCTGCGTTTTCGCCGAGGAAAAAGGAGGGACAAGGAGGGGTTGTTGGGGAGGGAATGTATGTGGGGGAAACTGAGTGGAATATGAGGAGTGTTTCAAGGGCTAAAGGGTCCCTGTTGAGGTTTATGAAGGAGGAAATACCAGGGGTTACTTCGCCTATGGTTTATATTGGGATGATATTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTGAATTATATGCATATGGGTGCTGGGAAGACTTGGTATGGTGTGCCTAGAGAGGCTGCTGTCGCATTTGAGGAAGTTGTTAGGGTTCATGGGTATGGTGGAGAGAATAATCCTCTTGTTACATTTGCTGTTCTCGGTGAGAAGACGACAGTAATGTCACCTGAAGTATTTATCAGTGCAGGTGTACCATGCTGCAGGTTAGTTCAAAATGCCGGGGAGTTTGTGGTCACTTTCCCAAGAGCCTATCATTCAGGGTTCAGTCATGGATTCAACTGTGGGGAGGCAGCCAATATTGCTACACCTGAATGGTTGACAGTTGCTAAAGATGCTGCTATTCGAAGAGCTTCAATCAATTACCCTCCTATGGTGTCTCATTTCCAGTTACTTTATGATCTTGCTCTTGAATTTTGTACAAGAATACCTGTGAACATCAGTGCTAAACCACGGAGTTCAAGACTGAAAGATAAGCAAAAGGGTGAAGGAGAAACACTGGTTAAAGAGCAATTTGTGAAGAATATGATGCAGAATAATGACCTGCTTCATATTCTTGGAAAAGGATCTTCAGTGGTGCTTCTTCCACGAAGTTCTTCAGACATTTCTGTTTGTTCAAACTTACGAGTTGGATCCCAGCTAAGAGATAACCCCACCCTTGGATTAAGCAGCCAGAAGGATTTTATGAAATCCTCAAAAAGCTCAGGTTCTGATGACATCTTGATGGACGAGAACCAGGAAATTAATCAAGTGAAAGGCTTCTTTTCAGTGAAAGCGAAGTTTGCTTCTTTGTGTGAAAGGAATAGGTTCTCCACAATAAACGGAAATGAATGCACACAGAGTATGAACATGAGTACTGAAAGAGGTAGCCCCATTCATGGTGATAAGCTGTCAGATCAGAGACTGTTTTCATGCGTCACATGTGGAATTTTGAGCTTTGATTGTCTTGCCATCATTCAACCGAAAGAGGCAGCTTCTAGATACCTCATGTCAGCTGATTGTAGTTTCTTTAATGATTGGGTCGTTGGTTCTGGAGTAACTAGGGATGTTTTTACTGTTGCTGGTGGGATTGCAAATATTCCTGAGCAGAATTCCTCAATGAGATGGGTGAGAAAGAATACCGTGGCTGGTTTATATGATGTCCCTGTTCAATCTCTTAATTACCAAATTCAGATGGCAGATCAAAGTGTTGAAGTGGCTTCCAGTTCTGCAAAACAGATGGAGTCTTCTGCTCTTGGCCTATTAGCTTTGAATTATGGAAATTCGTCTGATTCTGAGGATGATCAGGTTGAAGCAGGTCTATCTTGCCATGATGAAACTAACTTCACAAACTGTTCATTAGAAAGCAAATATCAGGGTCAGAGTTCTGCTTGCCCTTCTTACAAGCAGAAGTACTATGATGCTGAAACTGGTGGTCACCCTCTATCTCCATCAAAACATGATCAGCGGGGTGATGTTCCTTTCAAAGCTATTGATATGTATCCAGAACATGGAGATAGGCCAGATAATTTCAAGGATAGAAGTGATGATACTCTTGGATGTTCTTTTGGATTCCCAGCCAATAACCCTGCTTGCATTGAATCAAATGGTTTGGATGGTAGATACAGAGATCCGGTTTCAATACCACACATGTCTTTAAATTGTTCCCCAATTGTCCATGATACTGAAAAAACAAAGTTTAACAGGCCTACTGTACCAATAGAGAATCCAGATATGCCATTTACCCAAAGATCTGATAGAGACTCTTCGTGCTTGCACGTGTTCTGTCTTGAGCATGCTGTAGAAATAGAACAACAACTTCGTCAAATCGGTGGAGTACATATATTCCTTCTTTGCCATCCAGAGTATCCCAGGATTGAAGCAGAAGCAAAGTCAGTGTCAGAAGAATTGGGAATTGATCATCTATGGAATGACATTACTTTCAGAGATGCTGCCAAAGAGGATGAGGAGAGGATCCAGTCAGCTTTGGATACTGAGGAAGCCATACCAGGGAATGGGGACTGGGCTGTAAAGTTGGGGATCAATCTTTTTTACAGTGCCAACCTCAGCCGATCTCCTCTTTATAGTAAGCAGATGCCATACAATTCAGTTATATACAATGCCTTTGGTCGTGCTTCTCCAGTTAGTTCACCCCCAAAATTTAAGGTTTATGGAAGGAGATCTGGGAAGCCAAAAAAAGTTGTGGCAGGGAAATGGTGTGGAAAAGTTTGGATGTCAAATCAAGTTCATCCCTTTCTAGTGAAAAGGGATTTTGTATATCAAAATCAAGAACAAGAACAAGAAAGAAGCTTCCATGCTTTGGCCACTCCTGATGAAAAGCTTGAGAAAAAACCACAAACCATCCACAGAAATGAAACCAGTAGAAAATCTGGGAGGAAGAGGAAAATAATAGCAGGGAGCAGGACTGTTAAGAAAGTTAAGTGTCTGGAAGCAGAAGAAGCAGATTCAGAAGACTCGGTGGGGGATAATTCTCATAGGCAGCATATGAGAATTCACAATAGGAAAAACACTGAAGACATTGAGAGAGAGATTTCATATGATCTAGTAGAGGATAGCAATCAGCAGCATGGGAGCTACAGACGCAAATGGGCCAAATCTGTTGAGAGTGATGATGCAGTTTCAGATGATCCATTAGCTGAACATGTTCGTCAGCAGTATAGGAGAATGCGTAGAAGCAAGCAAGCCAAATCTATCAAGAGGGAAAATACAGTTTCTTATGCTTCAGTGGAGAACAAGTTTCGAAAGCAGCTTAGGAGAGTTCATAGAAGCGACCAAGCCAAATGTTCTGAGAGACGATGTGTAGCTTCTGATGACTCACTGGACGATAACAGTGATCAGTGGCATGGGAGAGCTCCAAGAAGCACACTAGCAAAATATACTGAGAGGGAAGATGCAAATTCAGATGATTCACCAGAGGAGAGTTCTCGTTGGCAACATGGGAGAGTTTCTAGGAGCAAACTTTTGAGATATGTCAAAAAGGAAAGTGCAATTTCAGATGATTCATTGGAGAATGGCTTTAAACAGCACAACAAGAGGATATCAAGAGGCAAGCGAGCCCAGGTCATTAAAAGGGATGATGTGGTTTCCGATGATTCATTGGATGAAAGTGCATTTCAGCAGCTCCCGAGATTTTCTAGGATCAAGCTAGCCAAATTAATTGAGAGGGAAGATGCATTTTCAGATGGTTCGTTGGAGGAAAATATCCATCAGCAGCATGGAAGGATTCTTAGAAGCAAGCAATCCAAATTTGTTGAAAGGGAAGATGCAATTTCAGATGATTCTCTTGAGGACAGTACTCACTGGCAGCACAGAAGAATTCCTAGAAGCAAAATGGCCAAATTTGTCGAGAGTGAAGATGCAGCTTCAGATGATTTGCAGGAGGATGATGGTCATCAGCATCACAGAAGAATTCCAAAACGCAAAAAGGCCAACTCTATTGAGAGTGAAGATGTAGTTTCTGATGATCTGTGGCAGAATAATATTCATCGGCACCTTAGGAAGACTCCTAGAGGCAAGCAACCCAATATAGTGGAGAGGGAAGAAGCTGTTTCAGATGACTTACTGGAGAATAGTTCTGATCAGCAGGACAGGATTATTCTTCGAAGCAAGCAGAAGAAATCTTCAATGAAACAAGGGATTCCTCGGCAACTGAAACAGAGTGCCCCTAAGATGATAAAAAAAGAGACCCCACAATTAATGAAACAAGAGAGACAAATAAAGCCAGAAACTCCTCAGCTTCGGTTTGGTAAAAGTGATATGAATGCTAGACAGTTTGATTCACATGCTGAAGAGGAGCGAGGTGGACCTCGCATGCGCCTCAGGAAAAGACTCTCAAAGGCTCCAAAACAGTCGTTAACAAGGCTGAAAGAGAAGCAGAACATCAAGAAAAAAGTGAAGGATGCTACAGCAGTGAAGGCTCCAGCTGGGCGAAAGAATGTTAAAATGAAAGACGAGGAGGCAGAATATCAGTGTGACATTGACGGGTGCAGAATGAGTTTTGTATCGAAACAGGAGCTTGCACTGCACAAAAGAAACATTTGTCCAGTCAAGGGGTGTGGAAAGAAGTTTTTCTCGCACAAATATCTGGTGCAGCATCGCCGAGTCCATATAGATGACCGCCCTCTCAAGTGCCCTTGGAAGGGATGCAAGATGACATTCAAGTGGGCATGGGCCCGGACCGAACATATCAGGGTTCACACAGGTGCTCGTCCTTATGTATGTGCTGAGGAAGGCTGTGGCCAGACATTCAGATTTGTGTCAGATTTCAGTCGTCACAAGCGGAAGACTGGTCATTTGGCAAAGAAAGGCCGGGGGTAA
Protein Sequence
- >POPTR_012G092400v3
MAAPSGLSPEPPQPPTSTEVCQWLKNLPLAPEYRPTQAEFQDPIAYIFKIEKEASQYGICKIIPPVLPSAKKTTLSNLNRSLSARNGDSSAPTFTTRQQQIGFCPRKPRPVQKPVWQSGETYTFQEFETKAKSFEKNYLKKFSKKGGLSPLEIENLYWKATLDKPFAVEYANDMPGSAFSPRKKEGQGGVVGEGMYVGETEWNMRSVSRAKGSLLRFMKEEIPGVTSPMVYIGMIFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRVHGYGGENNPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLALEFCTRIPVNISAKPRSSRLKDKQKGEGETLVKEQFVKNMMQNNDLLHILGKGSSVVLLPRSSSDISVCSNLRVGSQLRDNPTLGLSSQKDFMKSSKSSGSDDILMDENQEINQVKGFFSVKAKFASLCERNRFSTINGNECTQSMNMSTERGSPIHGDKLSDQRLFSCVTCGILSFDCLAIIQPKEAASRYLMSADCSFFNDWVVGSGVTRDVFTVAGGIANIPEQNSSMRWVRKNTVAGLYDVPVQSLNYQIQMADQSVEVASSSAKQMESSALGLLALNYGNSSDSEDDQVEAGLSCHDETNFTNCSLESKYQGQSSACPSYKQKYYDAETGGHPLSPSKHDQRGDVPFKAIDMYPEHGDRPDNFKDRSDDTLGCSFGFPANNPACIESNGLDGRYRDPVSIPHMSLNCSPIVHDTEKTKFNRPTVPIENPDMPFTQRSDRDSSCLHVFCLEHAVEIEQQLRQIGGVHIFLLCHPEYPRIEAEAKSVSEELGIDHLWNDITFRDAAKEDEERIQSALDTEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRASPVSSPPKFKVYGRRSGKPKKVVAGKWCGKVWMSNQVHPFLVKRDFVYQNQEQEQERSFHALATPDEKLEKKPQTIHRNETSRKSGRKRKIIAGSRTVKKVKCLEAEEADSEDSVGDNSHRQHMRIHNRKNTEDIEREISYDLVEDSNQQHGSYRRKWAKSVESDDAVSDDPLAEHVRQQYRRMRRSKQAKSIKRENTVSYASVENKFRKQLRRVHRSDQAKCSERRCVASDDSLDDNSDQWHGRAPRSTLAKYTEREDANSDDSPEESSRWQHGRVSRSKLLRYVKKESAISDDSLENGFKQHNKRISRGKRAQVIKRDDVVSDDSLDESAFQQLPRFSRIKLAKLIEREDAFSDGSLEENIHQQHGRILRSKQSKFVEREDAISDDSLEDSTHWQHRRIPRSKMAKFVESEDAASDDLQEDDGHQHHRRIPKRKKANSIESEDVVSDDLWQNNIHRHLRKTPRGKQPNIVEREEAVSDDLLENSSDQQDRIILRSKQKKSSMKQGIPRQLKQSAPKMIKKETPQLMKQERQIKPETPQLRFGKSDMNARQFDSHAEEERGGPRMRLRKRLSKAPKQSLTRLKEKQNIKKKVKDATAVKAPAGRKNVKMKDEEAEYQCDIDGCRMSFVSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHIDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHLAKKGRG