Information report for POPTR_005G005000v3
Gene Details
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Functional Annotation
- encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.
Homologous
- Actinidia chinensis: CEY00_Acc06634
- Citrullus lanatus: Cla97C01G025100
- Cucumis melo: MELO3C007085
- Gossypium hirsutum: Gohir.A13G177400, Gohir.D13G184000, Gohir.A11G275000
- Manihot esculenta: MANES_04G151800, MANES_04G151900, MANES_08G108300
- Prunus avium: Pav_sc0001938.1_g060.1.mk
- Prunus persica: PRUPE_6G306600
- Vitis vinifera: VIT_14s0060g00580
Gene Resources
- Pfam: PF14826 PF00557 PF08512 PF08644
- UniProt: U5GCX0
- RefSeq: XP_006382287.1
- EMBL: CM009294
- AlphaFoldDB: U5GCX0
- KEGG: pop:18098490
- InterPro: IPR000994 , IPR011993 , IPR013719 , IPR013953 , IPR029148 , IPR029149 , IPR033825 , IPR036005 , IPR040258 , IPR048969
- PANTHER: PTHR13980 , PTHR13980:SF18
- SUPFAM: SSF55920
- Gene3D: 2.30.29.150 , 2.30.29.210 , 2.30.29.30 , 3.40.350.10 , 3.90.230.10
- OrthoDB: U5GCX0
- CDD: cd01091
- eggNOG: KOG1189
- STRING: 3694.U5GCX0
- HOGENOM: CLU_004627_1_0_1
Sequences
CDS Sequence
- >POPTR_005G005000v3
ATGGCTGATCAGAGGAATGGAAGTGGGCAGCCTTCAAATGCAGCAAGAAATGTATATGCTATTGATGTGGAGAAGTTTAAAACACGGCTCAAGGCATTTTATTCGAATTGGAATGAGAACAAGGCTGATTTATGGGGGTCTTCTGATGTTGTTGCTATAGCAACACCTCCGCCTTCTGAGGACTTGCGGTATCTGAAATCATCAGCTTTGAATATTTGGTTGCTTGGGTATGAGTTTCCAGAGACGGTAATGGTTTTTATGAAGAAGCAGATTCATTTCTTGTGTAGCCAGAAGAAGGCTTCTTTGCTTGAAGTTGTCAAAAAACCTGCTAGGGAAGTTGTGGGTGTTGATGTTGTGATGCATGTGAAGGCGAAGACGGACAATGGGACTGGTCTGATGGAAGCAATATTCCGTGCTATTCGTTCTCAGTCAGGTGCTGATGGACAAGTTGCACCTGTTGTTGGACACATTGTGAGAGAGGCTCCTGAAGGAAATCTTTTGGAAACCTGGTCTGAGAAATTGAAGGGTGCAGGTTTTGAGCTTGCTGATGTAACTAATGGGTTGTCTGATTTGTTTGCTGTTAAGGATGCTGATGAGCTCATTAATGTGAAGAAAGCCGCTTTTTTGACTTTTAGTGTAATGAACAATATTGTGGTGCCGAAGCTTGAGAATGTTATTGATGAGGAGAAAAATATCACCCATTCTGCTTTGATGGATGAAGCAGAGAAGGCCATTTTAGACCCCACTAGAGCTAAGGCAAAGTTGAAGGCAGATAATGTTGATATATGCTACCCTCCCATATTTCAGAGTGGAGGGGAGTTTGATCTCAGGCCTAGTGCTGCAAGCAATGATGAGCCCCTGTATTATGATTCTGCCAGTGTAATTATAATTGCGGTGGGATCTCGATACAACAGTTACTGCTCCAATGTTGCCAGGACTTTAATGATAGATGCCACTCCTTTGCAGAGCAAGGCTTATGCTGTTCTTCTCAAGGCACAAGAAGCTGCTATCGGAGCACTGAAGCCCGGGAACAAACTCAGTGCTGCTTATCAAGCTGCCCTGTCAGTGGTTGAGAAGGAGGCTCCTGAATTGGTTCCAAATCTGAGCAAATCAGCTGGGACAGGCATGGGTCTTGAGTTTCGCGAGTCAGGACTGAATCTTAATGCCAAGAATGATCGAGCAGTGAAAGCTAAAATGGTTCTCAATGTGTCCCTTGGTTTTCAGAACTTGCAAAATCAGACTGATAATCCCAAGATTCGGAATTTCTCACTGTTGCTTGCAGATACTGTTATTGTCGGTGATCAAAATCCAGATGTGGTGACTTCCAAGAGCTCAAAAGCTGTTAAGGATGTGGCTTACTCATTTAATGAAGGTGAGGAAGAAGAACAAAAACCTAAAGCTAGAGCTGAGGTGAATGGCGGGGAAAACTTGATGTCTAAGACAACATTGAGGTCAGATAACGGGGAGATCTCAAAGGAGGAGCTTCGGAGGCAGCACCAAGCAGAACTTGCCCGGCAGAAGAATGAAGAAACTGCCCGGCGACTTGCTGGTGGAGGAAGTGCTAATGGAGACAGTCGTGCTGCTTCAAAGACTTCAGCTGATTTGGTGGCATACAAGAATGTCAATGATATTCCTCCTGCTAGAGATCTAATGATTCAGATAGACCAGAAGAATGAGGCTGTGCTTTTGCCTATTTATGGGAGTATGGTGCCTTTCCATGTTTCCACAATCAGGACAGTTTCCAGCCAGCAGGATACCAACCGGACCTGTTACATTCGAATCATTTTTAATGTTCCTGGGACGGCTTTTAATCCACATGACTCCAACTCATTGAAGCACCAAGGAGCTATTTATCTGAAGGAGGTTTCTTTTCGTTCAAAGGATCCTAGGCATATAAGTGAAGTGGTACAGCTGATCAAGACACTTAGACGGCATGTTATGGCCAGGGAGTCAGAGAGGGCTGAGAGGGCAACCTTGGTTTTGCAGGAGAAACTACAGCTTGCAGGGAATAGATTCAAGCCAATAAGGTTGACTGACCTTTGGATTCGTCCTGTTTTTGGTGGCCGTGGAAGAAAGTTGCCTGGTTCTCTTGAAGCCCATGTTAATGGGTTCCGATATTCTACAAGCAGAGCCGAGGAGCGTGTGGATATTATGTTTGCAAACATCAAACATGCATTTTTCCAGCCTGCAGAGAAGGAGATGATTACTCTCCTGCACTTCCATCTTCACAACCACATTATGGTGGGAAACAAGAAGACCAAGGATGTGCAGTTTTATGTTGAGGTGATGGATGTGGTCCAGACTTTGGGAGGTGGAAAAAGGTCTGCCTATGACCCAGATGAGATTGAAGAAGAGCAGCGGGAAAGAGAGAGGAAGAATAAGATCAATATGGATTTTCAGAGCTTTGTAAATCGGGTGAATGACCTTTGGGCCCAGCCCCAATTTAGTGGACTTGACCTTGAGTTTGATCAGCCTTTGAGAGAGCTTGGCTTCCATGGAGTGCCCCACAAGGTTACATCTTTCATCGTCCCCACTTCAAGCTGCCTGGTTGAGTTAGTTGAGACTCCTTTCCTTGTTGTCACCCTTAGTGAGATTGAGATTGTCAATTTGGAGAGAGTTGGGCTTGGACAGAAAAACTTTGACATGACCATTGTCTTCAAGGACTTCAAGCGTGATGTCCTCAGGATTGACTCTATTCCATCAACGGCACTTGATGGCATCAAAGAATGGCTTGACACAACAGACATCAAGTATTATGAGAGCAGGCTGAATCTTAACTGGCGACAGATACTGAAGACAATCACTGATGACCCACAGAGCTTCATTGATGACGGGGGGTGGGAATTTTTGAATTTGGAAGCTAGCGATTCAGATTCTGACAACTCAGAGGATTCAGACCAGGGTTACATACCATCAGATGCAGAACCTGACTCTGAGACGGAGGAGGAAGACTCTGATAGTGAATCACTTGTGGAGTCTGAGGACGATGAAGAGGATGATTCTGAGGAAGACTCTGAGGAAGAAAAGGGTAAGACATGGGAGGAGCTGGAGAGGGAAGCAAGCAATGCAGACAGGGAAAAGGGTGATGATTCAGACAGTGAGCAGGAGAGGAACAGAAGGAAAGCAAAGGCTTTTGGGAAGTCTCGAGCCCCTTCCAGACCCGCTCCTAGAATGCCCAAGCGCCCCAAGTTCCGATAG
Protein Sequence
- >POPTR_005G005000v3
MADQRNGSGQPSNAARNVYAIDVEKFKTRLKAFYSNWNENKADLWGSSDVVAIATPPPSEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIHFLCSQKKASLLEVVKKPAREVVGVDVVMHVKAKTDNGTGLMEAIFRAIRSQSGADGQVAPVVGHIVREAPEGNLLETWSEKLKGAGFELADVTNGLSDLFAVKDADELINVKKAAFLTFSVMNNIVVPKLENVIDEEKNITHSALMDEAEKAILDPTRAKAKLKADNVDICYPPIFQSGGEFDLRPSAASNDEPLYYDSASVIIIAVGSRYNSYCSNVARTLMIDATPLQSKAYAVLLKAQEAAIGALKPGNKLSAAYQAALSVVEKEAPELVPNLSKSAGTGMGLEFRESGLNLNAKNDRAVKAKMVLNVSLGFQNLQNQTDNPKIRNFSLLLADTVIVGDQNPDVVTSKSSKAVKDVAYSFNEGEEEEQKPKARAEVNGGENLMSKTTLRSDNGEISKEELRRQHQAELARQKNEETARRLAGGGSANGDSRAASKTSADLVAYKNVNDIPPARDLMIQIDQKNEAVLLPIYGSMVPFHVSTIRTVSSQQDTNRTCYIRIIFNVPGTAFNPHDSNSLKHQGAIYLKEVSFRSKDPRHISEVVQLIKTLRRHVMARESERAERATLVLQEKLQLAGNRFKPIRLTDLWIRPVFGGRGRKLPGSLEAHVNGFRYSTSRAEERVDIMFANIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERERKNKINMDFQSFVNRVNDLWAQPQFSGLDLEFDQPLRELGFHGVPHKVTSFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDSDSDNSEDSDQGYIPSDAEPDSETEEEDSDSESLVESEDDEEDDSEEDSEEEKGKTWEELEREASNADREKGDDSDSEQERNRRKAKAFGKSRAPSRPAPRMPKRPKFR