Information report for POPTR_002G013100v3
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Actinidia chinensis: CEY00_Acc07494
- Capsicum annuum: T459_25488
- Daucus carota: DCAR_029206
- Glycine max: Glyma.09G185800
- Gossypium hirsutum: Gohir.D05G183500, Gohir.A05G180500
- Juglans regia: Jr11_19040
- Manihot esculenta: MANES_11G098200
- Nicotiana attenuata: A4A49_07894
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: B9GQ41
- EMBL: CM009291
- AlphaFoldDB: B9GQ41
- KEGG: pop:7496880
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: B9GQ41
- SMR: B9GQ41
- eggNOG: KOG0029
- STRING: 3694.B9GQ41
- HOGENOM: CLU_004498_5_0_1
Sequences
CDS Sequence
- >POPTR_002G013100v3
ATGGAAACAACCGCTGAACCTCCTCAGGACCCCTCCGATAATGCAAACGATGTCGTTTCCGAGGACTCATCACCAGAAACCGACCTCAACGACCACCAAAACTCGCCGGAAACCATCCTCCCACCTTCATCTGAAACCCAGTCTCCACTTCCCAATACAATACTCGACGCTCCAGTTTCAGACTCCCAAGACGACTCTTCTGACCCCATACAGCCACCCCAAAACCCTAACTCCACATTTCCTGCTCCACCTCCCAAAAAACGACGCCGTAGAAAACGCTTCTTTACCGAAATCAACGGCAATCCCCCCTTCCGCCGCCACAGAATTGGCGGCGGTCTCTCAAAAGAAGTCGATGTCGAAGCATTAATAGCGATCTCCGTCGGGTTTCCTGTCGATTCGTTAACTGAAGAAGAAATTGAAGCTAACGTGGTGTCTACCATTGGCGGCACGGAGCAAGCTAATTATATTGTCGTGAGAAACCATATTCTTAGTCGCTGGAGATCCAGTGTCTCTGTTTGGTTAACGCGTGATCATGCGCTCGAGTCGATTCGGGCCGAGCACAAAGCCTTAGTTGATTCTGCTTATAATTTTCTGCTACAACATGGCTACATTAACTTTGGCGTGGCGCTGTCTATTAAAGAAGCGCAGTTGAAATTAAATGAGGGAGTGGAGAGAGCCAATGTGGTTGTTGTGGGTGCAGGACTCGCGGGGTTGGTTGCGGCGAGGCAGTTAATGGCTATGGGTTTTAAGGTTGTTGTTTTGGAAGGGAGGGCTCGGCCGGGTGGGCGTGTGAAGACTATGATTTTGAAGGGGGAAGGAGTGGTGGCTGCGGCGGATCTTGGTGGGAGTGTTCTCACTGGAATAAATGGAAATCCACTTGGAGTTCTAGCGAGGCAAATGGGGTTGCCATTGCATAAGGTGAGAGATATTTGCCCTTTGTATTTGCCGGATGGGAAGGCTGTTGATTCCGAGATTGATTCTAGGATAGAGGCTTCTTTTAATAAGTTATTAGATAGAGTTTGTAAGCTTAGACAGGCTATGATCGAGGAAGTTAAATCTGTAGATGTTAATTTAGGGACCGCTCTTGAAGCATTTAGGCATGTTTATAAGGTGGCTGAGGATCCACAAGAGCTAATGTTATTAAATTGGCATCTTGCGAATTTGGAATATGCGAATGCTTCATTAATGTCTAATTTGTCTATGGCATATTGGGATCAGGACGATCCTTATGAAATGGGGGGTGATCATTGTTTTATTCCAGGAGGTAATGATACTTTTGTTAGAGAGCTTGCGAAGGACCTTCCGATTTTCTATGAGAAGACGGTGGAGAGTATAAGATATGGGGTTGATGGGGTTATTGTTTATGCGGGTGGACAGGGGTTCCGTGGGGATATGGTGCTTTGCACCGTTCCTTTGGGTGTGCTTAAGAAGGGATCAATTGAATTCGTCCCCGAGCTTCCACAAAGAAAGAAAGATGCAATTCAAAGACTAGGATATGGGTTACTAAATAAGGTGGCGTTATTGTTTCCCTATAATTTTTGGGGTGGAGAAATTGATACATTTGGTCATTTGACAGAAGATCCAAGCATGAGAGGCGAGTTTTTTCTGTTTTATAGCTACTCATCTGTTTCAGGGGGTGCTCTTTTAATTGCTCTTGTTGCTGGGGATGCTGCGGTTAAGTTTGAGACAATGTCTCCAGTGGAGTCTGTGAAAAGGGTCCTTGGCATATTGCGAGGTATTTTCCATCCAAAAGGGATTGTTGTTCCAGATCCAGTTCAATCGGTTTGCACTCGCTGGGGAAAAGATTGCTTCACGTATGGATCTTATTCATATGTTGCAGTGGGGTCTTCAGGAGACGATTATGATATTCTTGCTGAGAGCGTGGGGGATGGAAGGGTTTTCTTTGCAGGAGAGGCGACAAACAAACAGTATCCAGCAACAATGCATGGAGCTTTTCTTAGTGGGATGAGAGAGGCTGCTAATATATTGAGAGTGGCCAACAGAAGGTCATTATCTGTGATTGACAAAGTAAATAATAGCCTTGAGGAAATTGACGATCTTAATGAATTATATGACACCCCTAATCTGAAATTCGGGAGCTTCTCTATTTTGTTTGATCCCAGGTCAAATGATGGGGAATCTCTGTCATTGTTGAGGGTCAAATTCCAAGGAGGAGAATCAGATTCTTGTTTTCTATGTCTTTATGGTTTGATTTCTAGGAAGCAGGCTGTTGAACTTAGTGAGCTACAAGACGATGGAAAGAGGATGGAAATGCTGTATAATAACTTTCAGATAAGGTTAGTTGGAAGGAAAGGTTTGCCTAATGCTGGGGAATCTCTTCTAACATACATCAAAGAGGCTAGATCCAAACTAAATGTAGGGAATTGA
Protein Sequence
- >POPTR_002G013100v3
METTAEPPQDPSDNANDVVSEDSSPETDLNDHQNSPETILPPSSETQSPLPNTILDAPVSDSQDDSSDPIQPPQNPNSTFPAPPPKKRRRRKRFFTEINGNPPFRRHRIGGGLSKEVDVEALIAISVGFPVDSLTEEEIEANVVSTIGGTEQANYIVVRNHILSRWRSSVSVWLTRDHALESIRAEHKALVDSAYNFLLQHGYINFGVALSIKEAQLKLNEGVERANVVVVGAGLAGLVAARQLMAMGFKVVVLEGRARPGGRVKTMILKGEGVVAAADLGGSVLTGINGNPLGVLARQMGLPLHKVRDICPLYLPDGKAVDSEIDSRIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQELMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYEKTVESIRYGVDGVIVYAGGQGFRGDMVLCTVPLGVLKKGSIEFVPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGALLIALVAGDAAVKFETMSPVESVKRVLGILRGIFHPKGIVVPDPVQSVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVANRRSLSVIDKVNNSLEEIDDLNELYDTPNLKFGSFSILFDPRSNDGESLSLLRVKFQGGESDSCFLCLYGLISRKQAVELSELQDDGKRMEMLYNNFQIRLVGRKGLPNAGESLLTYIKEARSKLNVGN