Information report for PHAVU_009G166900g
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Actinidia chinensis: CEY00_Acc26818
- Glycine max: Glyma.04G195200, Glyma.06G170800, Glyma.05G047600
- Juglans regia: Jr09_04920
- Medicago truncatula: Medtr3g089140, Medtr4g103600
- Populus trichocarpa: POPTR_012G096700v3
- Prunus avium: Pav_sc0000063.1_g080.1.mk
- Prunus persica: PRUPE_5G152300
- Rosa chinensis: RchiOBHm_Chr7g0190351
- Vitis vinifera: VIT_17s0000g01500
Gene Resources
- Pfam: PF02201
- UniProt: V7AW92
- RefSeq: XP_007137922.1 , XP_007137923.1 , XP_007137924.1 , XP_007137925.1
- EMBL: CM002296
- AlphaFoldDB: V7AW92
- OMA: IHLEHNI
- InterPro: IPR003121 , IPR019835 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- OrthoDB: V7AW92
- SMR: V7AW92
- CDD: cd10568
- eggNOG: KOG2570
- STRING: 3885.V7AW92
Sequences
CDS Sequence
- >PHAVU_009G166900g
ACACAACCACACCACCCTAACCCCATTCAGCAATGGAACCCTTCAATTCCAACCCCTTTACACTCTCAATCACAATCACAGTCTCAGCCACGTCCTCAGACACAATTCCCTGGTCTCTTTCAGTTTTCAGAGCCCCAATCTCATGTTCTTGCACAAGCTCAGTATGCACAGACACAATTGCAGTCTCAGGCTGCACGAGCTCATCCACAACCTCAAACTCACCCTTTTACCCACTTGCATAGTGTAAATACTAATGCTGCTAATGGCACATCATCCCCGGCCACCGGAAATGCCAAGCGACCAACCCCGAAGCCCCTGTTGAGGACTCATAATTCATCCAATATGAACCAATCCATGCCGGGTGCTCGGCAGCAAAAGAAGCAATCACCAGAGAAGGGGGCTATGTTTTTGCCTGAGTCGGCTCTGTATACTCAATTACTTGATTTTGAGGCTCAGGTGGATACTGCTTTGGCCAGGAGAAAGTTTGATATACAGGAGGCTAGGCTCCTTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTCAATACCTTCTCAAATCATGCCAAAATGGATTCTGAGCATAAGAAGGCCAATGAATCTTCTTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCCATGTCTGGAATTTCACAGAGATCGAGCCCTCCGAACCCAAAGTTCTCTGCATTTTTCAAGAAAATTACCATACATTTGGATCAAAGCATTTATCCTGATAATCATGTCATTGTATGGGATAGTGCTCGTTCACCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAGTTTACTGCAGTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACAACTGTCTAAACTCTTAGGTATTGAGGTTGAGACTCGTCCAAGAATAATAGCTTCTCTTTTTAACTACGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCGTCTTTCATATGTGATCCTTCTCTACAAAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTTTCAGAAGTTAGCACAGCATTTGTCACAGCCACAACCAATCCATCTGGAGCATAACATCAAGCTTTCTGAATATGCTCCAGCTGTAACTGCATGTTATGATATACAGGTGGATGTGCCTTTTCCATTGGAAAAAGACAAGTCTACATTCTTGTCAAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAGGCTATTTGTGTTTCCTTAAAGAAGATCCAAGAGCATCGGAGAAGACGGGCTTTTTTTCTTAGTTTTAGTCAGTCTCCAGTAGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTTGCTGGAGATGCCAGGCATAACGTTGAAAAGGAACTTCGATCTGAATTCTACAATCAACCATGGGTCGAGGATGCTGCCATTCGTTACTTGAACCGCAAAAATGCAGGAATTGATGTTATTGGACGCAACTAA
Protein Sequence
- >PHAVU_009G166900g
QFSEPQSHVLAQAQYAQTQLQSQAARAHPQPQTHPFTHLHSVNTNAANGTSSPATGNAKRPTPKPLLRTHNSSNMNQSMPGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSEHKKANESSWSLKITGRILEDGMDSMSGISQRSSPPNPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNVEKELRSEFYNQPWVEDAAIRYLNRKNAGIDVIGRNQFSEPQSHVLAQAQYAQTQLQSQAARAHPQPQTHPFTHLHSVNTNAANGTSSPATGNAKRPTPKPLLRTHNSSNMNQSMPGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSEHKKANESSWSLKITGRILEDGMDSMSGISQRSSPPNPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNVEKELRSEFYNQPWVEDAAIRYLNRKNAGIDVIGRNQFSEPQSHVLAQAQYAQTQLQSQAARAHPQPQTHPFTHLHSVNTNAANGTSSPATGNAKRPTPKPLLRTHNSSNMNQSMPGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSEHKKANESSWSLKITGRILEDGMDSMSGISQRSSPPNPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNVEKELRSEFYNQPWVEDAAIRYLNRKNAGIDVIGRNQFSEPQSHVLAQAQYAQTQLQSQAARAHPQPQTHPFTHLHSVNTNAANGTSSPATGNAKRPTPKPLLRTHNSSNMNQSMPGARQQKKQSPEKGAMFLPESALYTQLLDFEAQVDTALARRKFDIQEARLLPHVQKTLRVYVFNTFSNHAKMDSEHKKANESSWSLKITGRILEDGMDSMSGISQRSSPPNPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSSFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSEYAPAVTACYDIQVDVPFPLEKDKSTFLSSLESQKEIEAYDEAICVSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDARHNVEKELRSEFYNQPWVEDAAIRYLNRKNAGIDVIGRN