Information report for PHAVU_004G159100g
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Actinidia chinensis: CEY00_Acc07494
- Daucus carota: DCAR_029206
- Glycine max: Glyma.09G185800, Glyma.07G090100
- Gossypium hirsutum: Gohir.A05G180500, Gohir.D05G183500
- Juglans regia: Jr11_19040
- Manihot esculenta: MANES_11G098200
- Medicago truncatula: Medtr6g084700
- Populus trichocarpa: POPTR_002G013100v3
- Prunus avium: Pav_sc0000367.1_g050.1.mk
- Prunus persica: PRUPE_1G356300
- Rosa chinensis: RchiOBHm_Chr6g0304051
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: V7C3S6
- RefSeq: XP_007152780.1
- EMBL: CM002291
- AlphaFoldDB: V7C3S6
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF101447 , SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: V7C3S6
- SMR: V7C3S6
- eggNOG: KOG0029
- STRING: 3885.V7C3S6
Sequences
CDS Sequence
- >PHAVU_004G159100g
GAAAACGACGTCGCAATGTCTCCTCAAAACTCCTCCGAAGACCCAGACTCCTCCCTCCCCACCCAAATGACGCCCGAGCCCGCCGTTGCGGACTCCCCAGACTCCACCACGACCCGACACGACCCGGTCCCACCGACGCGAAAACGTCGCCGTCGCAAGAAGTTCTTCACGGAACTCAACGCTCCGTCCTCCACCCGCCGAAGCGACGTAGCCAAGGACTGCGACGTGGAAGCCCTGATCGCGATCTCGGTGGGGTTCCCCGTGGACTCGTTAACCGAGGAAGAGATCGAAGCGAACGTGGTTTCCACCGTCGGTGGCTCCGAACAATCGAACTATATCGTCGTCCGAAACCACATATTGGCGCGGTGGCGGTCCAACGTTTCGGTCTGGTTAACCCACGACCGGGCCCTCCGGTCGATCCGGTCGGAGCACAAGGGTTTAGTCGAAACCGCGTACCGGTTCCTCCTTGAGCACGGTTACATTAACTTCGGCCTCGCGCATGAGATTAAAACCCTAAAGCTGAAACCTTTCGATGGGTCTGATCGAGGAACGGTGATTGTGATCGGTGCTGGGTTCGCAGGTTTGGTTGCAGCTAGACAATTGGTGTTTATGGGGTTTAAAGTCGTGATTTTGGAGGGTAGGACCCGACCCGGTGGGAGGGTCAAGACGAAGAAGATTAGTGGTGATGGTGTTGAGGCTGCAGCCGATTTCGGTGGGAGTGTCCTCACTGGAATAAATGGGAACCCTCTTGGGGTACTTGCTAGACAATTGGGTTTGCCTTTGCATAAGGTCAGGGATATTTGTCCTCTCTATTTGCCTGATGGGAGGAGTGTTGACTCTGAGGTTGACTCTAGGGTTGAAGTTTCGTTTAACAAGTTGTTGGAGAGGGTTTGTAAGCTTAGACAGGCCATGATTGAGGAGGTGAAGTCAGTGGATGTGCCATTGGGGACGGCATTGGAGGCTTTCAGAAGGGTTTACAAGGTTGCTGAGGATAAGGAGGAGAGGATGCTGCTGAATTGGCACCTTGCAAATTTGGAGTACGCGAATGCAACTCTCATGGCGAATTTGTCCATGGCTTATTGGGATCAGGATGATCCCTATGAGATGGGGGGTGATCATTGCTTCATTCCAGGGGGCAATGAGACATTTGTTCGCGCGTTGGCAGAGGATCTGCCGATTTTCTATGGGAGGACTGTGGAGTGTGTGAAGTATGGGAGTGATGGGGTGGCGGTTTCTGCTGGTGGGATGGAGTTTAGAGGGGATATGGTGCTTTGTACTGTGCCATTGGGGGTGCTTAAGAAGGGGGATATTGAGTTTGTGCCTGAGCTTCCTCAGAGGAAGAAGGATGCTATTCGTAGGTTGGGGTTTGGGTTGTTGAACAAGGTTGCAATGTTGTTTCCATATAATTTCTGGGGTGGGGACATTGATACTTTTGGTCATTTGACTGAGGATTTGAGTATGAGGGGTGAGTTTTTTCTGTTCTATAGCTACTCCTCGGTGTCTGGGGGCCCGCTTCTGGTGGCTCTTGTTGCTGGGGAGGCTGCAATTAGGTTTGAGATGATGTCACCAGTGGAGTCTGTGAAAAGGGTGTTGGACATTCTGAAGGATATTTTCAATCCAAAGGGGATTGTTGTTCCGGATCCGGTTCAGGCCGTGTGTACTCGGTGGGGGAAGGATCACTTTGCATATGGATCGTACTCTTATGTTGCTGTTGGATCTTCAGGAGATGATTATGACATTCTTGGAGAGAATGTTGGGAATGGAAGAGTGTTCTTTGCTGGAGAGGCAACCTGCAAGCAGTATCCTGCGACTATGCATGGAGCGTTTCTCAGTGGAATGAGAGAGGCTGCAAACATTTTGAGAGTGGCAAAGAGGAGGTCTTCCATGCCTGGTTTTGACACATCAAAAAGTAACTCCCAGGAGGATGATGATTTGCACAAACTGTTTTTGAAACCTGATATGACATTTGGTAGCTTCTCTGCTTTGTATGATCCAAAGCTGAATGATCTTGATTCCAGTTCATTACTGAGGGTTAAAATTGGAGGTGCTGTATTGGACTCTGGCAATCTTTATCTCTATGCCTTGCTCTCAAAGAAGCGGGTCATTGAGTTGAGTCAGGTGGAGGGAGATGAGAACAGGATGAGAATTTTAAACCGCAATTTCGGAGTGAGTTTAGTTGGGAGGAAGGGTTTAAGTGGTGCTGCTGAATCTCTTATCCTCAGCATAAAATTGTCCAGACCCAACTTTCATGAAGTGGAAAATTGTCTTACGACTGGAAAGGAAAATTCATAG
Protein Sequence
- >PHAVU_004G159100g
DPVPPTRKRRRRKKFFTELNAPSSTRRSDVAKDCDVEALIAISVGFPVDSLTEEEIEANVVSTVGGSEQSNYIVVRNHILARWRSNVSVWLTHDRALRSIRSEHKGLVETAYRFLLEHGYINFGLAHEIKTLKLKPFDGSDRGTVIVIGAGFAGLVAARQLVFMGFKVVILEGRTRPGGRVKTKKISGDGVEAAADFGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGRSVDSEVDSRVEVSFNKLLERVCKLRQAMIEEVKSVDVPLGTALEAFRRVYKVAEDKEERMLLNWHLANLEYANATLMANLSMAYWDQDDPYEMGGDHCFIPGGNETFVRALAEDLPIFYGRTVECVKYGSDGVAVSAGGMEFRGDMVLCTVPLGVLKKGDIEFVPELPQRKKDAIRRLGFGLLNKVAMLFPYNFWGGDIDTFGHLTEDLSMRGEFFLFYSYSSVSGGPLLVALVAGEAAIRFEMMSPVESVKRVLDILKDIFNPKGIVVPDPVQAVCTRWGKDHFAYGSYSYVAVGSSGDDYDILGENVGNGRVFFAGEATCKQYPATMHGAFLSGMREAANILRVAKRRSSMPGFDTSKSNSQEDDDLHKLFLKPDMTFGSFSALYDPKLNDLDSSSLLRVKIGGAVLDSGNLYLYALLSKKRVIELSQVEGDENRMRILNRNFGVSLVGRKGLSGAAESLILSIKLSRPNFHEVENCLTTGKENS