Information report for PGSC0003DMG400024033
Gene Details
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Functional Annotation
- Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. Mutations in TIR1 block auxin stimulation of flavonoid synthesis.
Homologous
- Capsicum annuum: T459_18588, T459_08369
- Citrullus lanatus: Cla97C09G169010
- Glycine max: Glyma.03G209400
- Juglans regia: Jr08_12700, Jr11_13940
- Lactuca sativa: gene-LSAT_5X188920, gene-LSAT_0X45201
- Manihot esculenta: MANES_05G067800, MANES_01G214300
- Nicotiana attenuata: A4A49_24641, A4A49_22056
- Prunus avium: Pav_sc0000848.1_g430.1.mk
- Prunus persica: PRUPE_8G253300
- Rosa chinensis: RchiOBHm_Chr6g0292661
- Sesamum indicum: SIN_1012796, SIN_1012494
- Solanum lycopersicum: Solyc09g074520.3
- Vitis vinifera: VIT_07s0104g01320
Gene Resources
- Pfam: PF18511 PF18791
- UniProt: M1C7Y8
- RefSeq: XP_006352806.1
- AlphaFoldDB: M1C7Y8
- KEGG: sot:102578999
- OMA: YPWLDEI
- InterPro: IPR006553 , IPR032675 , IPR041101 , IPR041567
- PANTHER: PTHR16134 , PTHR16134:SF99
- SUPFAM: SSF52047
- Gene3D: 1.20.1280.50 , 3.80.10.10
- OrthoDB: M1C7Y8
- SMR: M1C7Y8
- CDD: cd22159
- eggNOG: KOG1947
- STRING: 4113.M1C7Y8
- HOGENOM: CLU_022456_1_0_1
Sequences
CDS Sequence
- >PGSC0003DMG400024033
ATGTCGTCGTCATTCCCTGAACAAGTGTTGAAGCACCTCTTCTCCTTGTTAACCTCACACAAGGACCGTAACAGTATATCCTTAGTCTCTAAGTCGTGGTACGAGCTCGAGAGGCGCTCTAGGAGGAGTGTCTTCATCGGCAACTGCTACGCCGTTAGCCCTGAGATTATGATCACACGCTTCCCTCAACTCACATCCATCTATCTCAAAGGAAAGCCCCATTTTGCTGACTTTAATCTCGTTCCTGACGGATGGGGTGCCTATCTTCAACCTTGGATTGCTGCAATGTCTCCCTCTTATCCTTGGCTTGAGGAAATTAGACTCAAGCGAATGGTTGTCACTGATGACTCCTTGGACTTGATTTCCACCTCATTTCACCATTTCAAGGTCTTGGTCTTGTTGTCTTGTGAAGGCTTTACTACCGATGGACTTGCTGCCATTGCCGCTAACTGCAGAAATCTCACTGAACTAGACTTGGGAGAAAGTGAAGTGGAGGACCTAAGTAGTGATTGGCTCAGTCATTTTCCTGATGGTTGTACGTCACTGGTGTCACTTAACATTTCTTGTTTGGGTTCTGAGATCAGCTTATCACATCTGGAGAGTCTCATTGCACGTTCTCCTAATTTGAAGACACTTCGGCTCAGTCAAGCTGTCCCCCTTGAGAAACTTCCACACATATTGTCTTGTGCTTCCCAATTGGTTGAATTTGGTACAGGTGCATACTCTTCTGAGGTACAGTTACAGTCTGATGTTTTCTCAAACCTCCAAGAAGCTTTTTCAGGCTGCAAGATACTTGAAGGCTTGTCTGGATTTTGGGATGTCATGCCAGCTTACCTTCCAGCTGTATATCCAGTTTGCTCCAGACTCACCTCATTGAATTTAAGCTATGCTACTATTCAAAACCCTCATCTTAACAAGCTCATAAGTCTGTGTCATAATTTGCAGAGATTGTGGGTACTAGACTACATTGAAGATACCGGTCTCCAGGCGCTTGCCGGTACCTGTAAAGACCTGCAAGAACTTAGGGTGTTTCCTTCTAATCCCTTTGATCCAGAACCAAATGTTTCCCTGACAGAGCAGGGACTTGTAGCTGTTTCAGATGGCTGTCCTAAGCTCCAAACAGTTTTATACTTCTGCCGCCAAATGAGAAATGCCGCTTTGATTACTATTGCTAGAAACAGTCCTAACATGGTTTGTTTTCGCTTGTGTATTTTGGAACCTCGAACTCCTGATTACTTGACTCTTGAACCGCTTGATGCTGGTTTTGGGGCAATTGTAGAACAATGCAAAGAGTTGCGGCGACTTTCTCTTTCTGGCCTTCTTACTGACCGTGTGTTTGAGTACATTGGGACCCATGCTAAAAAGTTAGAGATGCTTTCCGTCGCCTTTGCTGGGGATAGTGATATGGGCCTCCACCATGTACTCTCTGGATGTGAGAGCCTCAGAAAACTAGAGATCAGAGACTGCCCCTTTAGTGACGACGCTCTTTTGGCTAATGCTGCAAAACTGGAGACAATGAGATCCCTTTGGATGTCTTCTTGTTCAGTAAGTTTTGGAGCCTGTAAGCTGCTAAGTCAGAAGATGCCTAGGCTTAATATTGAAGTTATAGATGAGATGGGTCCTCTGGACACGCAGCCAAGAAGCTGCCCTGTTGATAAACTTTACATATACCGAACAGTGGCTGGACCAAGGTTTGACCTGCCTGGTTTTGTTCGGATAATGAAAGAAGATGCTGCACATTAG
Protein Sequence
- >PGSC0003DMG400024033
MSSSFPEQVLKHLFSLLTSHKDRNSISLVSKSWYELERRSRRSVFIGNCYAVSPEIMITRFPQLTSIYLKGKPHFADFNLVPDGWGAYLQPWIAAMSPSYPWLEEIRLKRMVVTDDSLDLISTSFHHFKVLVLLSCEGFTTDGLAAIAANCRNLTELDLGESEVEDLSSDWLSHFPDGCTSLVSLNISCLGSEISLSHLESLIARSPNLKTLRLSQAVPLEKLPHILSCASQLVEFGTGAYSSEVQLQSDVFSNLQEAFSGCKILEGLSGFWDVMPAYLPAVYPVCSRLTSLNLSYATIQNPHLNKLISLCHNLQRLWVLDYIEDTGLQALAGTCKDLQELRVFPSNPFDPEPNVSLTEQGLVAVSDGCPKLQTVLYFCRQMRNAALITIARNSPNMVCFRLCILEPRTPDYLTLEPLDAGFGAIVEQCKELRRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDMGLHHVLSGCESLRKLEIRDCPFSDDALLANAAKLETMRSLWMSSCSVSFGACKLLSQKMPRLNIEVIDEMGPLDTQPRSCPVDKLYIYRTVAGPRFDLPGFVRIMKEDAAH