Information report for PGSC0003DMG400024017
Gene Details
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Functional Annotation
- Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. Promotes seedling etiolation in both the presence and absence of phytochrome A. Overexpression results in etiolation under far-red light. Accumulates in the nucleus after exposure to far red light. The phosphorylation state of the Ser-86 residue of the phytochrome B molecule alters dark reversion of the molecule.;Encodes photoreceptor phytochrome B
Homologous
- Arabidopsis thaliana — AT2G18790
- Oryza sativa — LOC_Os03g19590
Gene Resources
- Pfam: PF01590 PF02518 PF00512 PF00989 PF08446 PF00360
- UniProt: M1C7W5
- EMBL: MG604307
- OMA: DDNTCCS
- InterPro: IPR000014 , IPR001294 , IPR003018 , IPR003594 , IPR003661 , IPR005467 , IPR012129 , IPR013515 , IPR013516 , IPR013654 , IPR013767 , IPR016132 , IPR029016 , IPR035965 , IPR036097 , IPR036890 , IPR043150 , IPR044767
- PANTHER: PTHR47876 , PTHR47876:SF3
- SUPFAM: SSF47384 , SSF55781 , SSF55785 , SSF55874
- PROSITE: PS00245 , PS50046 , PS50109 , PS50112
- Gene3D: 1.10.287.130 , 3.30.450.20 , 3.30.450.270 , 3.30.450.40 , 3.30.565.10
- OrthoDB: M1C7W5
- SMR: M1C7W5
- CDD: cd00082 , cd00130 , cd16932
- STRING: 4113.M1C7W5
- HOGENOM: CLU_010418_0_0_1
Sequences
CDS Sequence
- >PGSC0003DMG400024017
ATGGCTTCTGGAAGTAGAACAAAGCATTCCCATCATAGTTCATCTCAAGCTCAATCTTCAGGTACAAGTAATGTAAATTACAAAGATTCAATAAGCAAAGCTATAGCACAGTACACAGCTGATGCTAGGCTTCATGCTGTGTTTGAACAATCTGGTGAGTCTGGAAAGTTTTTTGATTATTCACAGTCTGTTAAAACTACTACACAATCTGTGCCTGAAAGGCAAATTACTGCTTATTTGACTAAAATTCAAAGAGGAGGTCATATTCAGCCTTTTGGTTGTATGATAGCTGTAGATGAGGCTAGTTTTCGTGTAATAGCTTATAGTGAAAATGCCTGTGAAATGCTTAGTTTAACTCCACAATCTGTTCCAAGCCTTGAGAAGTGTGAGATCCTCACTATTGGAACTGATGTTAGGACCCTTTTTACCCCTTCTAGCTCTGTTTTGCTAGAAAGAGCATTTGGGGCACGTGAGATCACTTTACTCAACCCAATTTGGATACATTCCAAGAATTCTGGAAAGCCCTTTTATGCAATTTTGCACAGGGTTGATGTTGGTATTGTCATTGATTTGGAGCCTGCTAGAACTGAGGACCCTGCTTTATCTATTGCTGGAGCAGTGCAGTCACAGAAACTTGCAGTGAGGGCTATTTCTCATTTGCAATCACTTCCTGGTGGGGACATTAAGCTTTTGTGTGATACTGTTGTTGAGAGTGTCAGGGAGTTAACCGGGTATGACCGGGTTATGGTATATAAATTTCATGAGGATGAACATGGAGAGGTAGTGGCTGAGAGTAAAAGATCAGATTTAGAGCCCTATATCGGTTTGCATTATCCTGCTACTGATATTCCTCAAGCTTCACGGTTTTTGTTTAAGCAGAACAGGGTGAGAATGATTGTGGACTGCCATGCTACCCCTGTGCGGGTTACTCAGGATGAATCACTGATGCAGCCTTTATGTCTAGTTGGTTCCACACTTAGAGCACCTCATGGTTGCCACGCACAGTACATGGCAAATATGGGGTCTATTGCCTCATTAACTCTGGCAGTTATTATCAACGGAAATGATGAGGAAGCTGTGGGTGGCGGTCGAAATTCAATGAGGCTATGGGGCTTGGTTGTTGGACACCACACTTCTGTTCGGTCCATTCCTTTCCCTCTTAGGTATGCATGTGAATTCCTTATGCAGGCCTTTGGACTCCAATTGAACATGGAGTTGCAATTGGCGTCACAGTTGTCTGAGAAACATGTTTTAAGGACACAAACACTGTTATGTGACATGCTCCTTCGAGACTCTCCACCGGGGATTGTTACCCAAAGCCCCAGTATTATGGACCTTGTGAAGTGCGATGGTGCTGCTCTATACTACCAGGGGAAGTACTATCCATTAGGCGTCACACCAACTGAAGCTCAGATAAAGGACATTGTGGAGTGGTTATTGGCTTACCATGGAGACTCAACGGGTTTAAGTACTGACAGTTTGGCTGATGCTGGGTATCCTGGAGCAGCTTCACTTGGTGATGCAGTTTGTGGTATGGCTGTCGCTTATATAACTTCTAAAGATTTCTTGTTTTGGTTTCGCTCCCACACAGCGAAAGAAATAAAGTGGGGTGGTGCAAAGCATCATCCTGAAGACAAGGATGACGGACAGAGAATGCATCCACGTTCTTCCTTCAAGGCATTTCTGGAAGTTGTTAAAAGTCGGAGCTCACCATGGGAAAATGCCGAAATGGATGCAATCCACTCTTTGCAGCTAATTCTGCGAGATTCATTTAAGGATGCTGAGGCAAGTAATTCTAAGGCTATTGTGCATGCTCATCTTGGGGAAATGGAGTTGCAAGGGATAGATGAACTGAGTTCTGTTGCCAGAGAAATGGTTAGATTGATCGAAACTGCAACAGCTCCCATATTTGCTGTTGATGTTGAAGGTCACATAAATGGGTGGAATGCAAAGGTCGCTGAATTGACAGGTGTATCAGTTGAAGAAGCAATGGGGAAGTCCTTGGTTCATGATCTTGTGTACAAAGAATCACAGGAGACTGCTGAGAAGCTTCTGTACAATGCTCTAAGAGGCGAGGAAGATAAAAATGTAGAAATAAAGTTGAGGACATTTGGAGCTGAACAACTGGAGAAAGCTGTTTTTGTGGTGGTTAATGCTTGCGCTAGCAAAGATTACACAAACAACATTGTTGGTGTTTGCTTTGTTGGGCAGGATGTTACTGGGGAAAAAGTTGTTATGGACAAGTTTATTAACATCCAAGGTGATTACAAGGCCATTGTGCACAGCCCCAATCCTCTGATCCCTCCAATATTTGCATCAGATGAGAACACTTGTTGCTCCGAGTGGAACACTGCCATGGAAAAACTCACTGGTTGGTCTAGAGGGGAGATTGTTGGAAAAATGTTAGTTGGTGAGATTTTTGGAAGTTGTTGTCGGCTCAAGGGCCCAGATGCCATGACAAAGTTCATGATCGTGTTGCATAATGCAATTGGAGGCCAGGATACAGACAAGTTTCCATTTTCCTTTTTTGACCGAAATGGGAAATATGTGCAAGCTCTTTTGACTGCAAATAAGAGAGTTAATATGGAGGGCGATACTATTGGGGCTTTCTGTTTCATACAGATAGCCAGTCCCGAACTGCAGCAAGCTCTAAGAGTTCAAAGGCAACAGGAAAAGAAGTGCTATTCTCAGATGAAAGAGCTGGCATACATTTGTCAGGAAATAAAAAGTCCTCTTAATGGTATACGCTTTACAAATTCATTGTTGGAGGCCACAAATTTGACAGAAAATCAGAAGCAGTATCTAGAGACAAGTGCTGCTTGTGAGAGGCAGATGTCTAAGATCATTAGGGATGTTGATCTGGAAAACATTGAGGACGGTTCACTGACCCTTGAGAAAGAAGATTTTTTTCTTGGGAGTGTAATAGATGCTGTTGTTAGCCAAGTGATGTTATTGCTGAGGGAAAAAGGCGTGCAGTTAATCCGTGATATACCAGAGGAAATTAAGACATTAACAGTACATGGTGATCAAGTGAGAATTCAACAGGTCTTGGCAGATTTCTTGTTGAACATGGTACGGTATGCACCATCACCTGATGGGTGGGTAGAAATCCAACTTCGACCAAGTATGATGCCAATATCTGATGGAGTAACTGTTGTGCATATTGATCTCAGGATTATATGCCCTGGCGAAGGGCTTCCTCCTGAATTGGTTCAAGACATGTTCCACAGCAGTCGGTGGGTAACTCAGGAAGGCTTAGGACTGAGCATGTGCAGAAAAATGTTAAAGCTTATGAATGGAGAAATCCAGTATATCAGAGAATCAGAAAGATGCTATTTCCTGATTATCCTCGACCTGCCAATGACACGCAAAGGTCCAAAGTGTGTTGGCTAG
Protein Sequence
- >PGSC0003DMG400024017
MASGSRTKHSHHSSSQAQSSGTSNVNYKDSISKAIAQYTADARLHAVFEQSGESGKFFDYSQSVKTTTQSVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEMLSLTPQSVPSLEKCEILTIGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSMRLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPPGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKAIVHAHLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGHINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLLYNALRGEEDKNVEIKLRTFGAEQLEKAVFVVVNACASKDYTNNIVGVCFVGQDVTGEKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYICQEIKSPLNGIRFTNSLLEATNLTENQKQYLETSAACERQMSKIIRDVDLENIEDGSLTLEKEDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGWVEIQLRPSMMPISDGVTVVHIDLRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFLIILDLPMTRKGPKCVG