Information report for PGSC0003DMG400020924
Gene Details
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Functional Annotation
- Encodes a nuclear-localized RRP6-like protein whose mutation leads to accumulation of an rRNA maturation by-product.
Homologous
- Actinidia chinensis: CEY00_Acc13302, CEY00_Acc23033
- Brassica oleracea: Bo6g056320
- Brassica rapa: Bra039486
- Capsicum annuum: T459_05971
- Cucumis sativus: CsGy4G010610
- Daucus carota: DCAR_013482
- Glycine max: Glyma.17G187400, Glyma.05G089300
- Juglans regia: Jr03_20750, Jr03_20740
- Lactuca sativa: gene-LSAT_2X103580
- Manihot esculenta: MANES_08G154300
- Nicotiana attenuata: A4A49_26245
- Populus trichocarpa: POPTR_019G038700v3, POPTR_T069700v3
- Solanum lycopersicum: Solyc10g018520.1
Gene Resources
- Pfam: PF01612 PF00570
- UniProt: M1BVM8
- RefSeq: XP_006338891.1
- AlphaFoldDB: M1BVM8
- KEGG: sot:102603216
- OMA: DWLVNIN
- InterPro: IPR002121 , IPR002562 , IPR010997 , IPR012337 , IPR012588 , IPR036397 , IPR044876 , IPR045092 , IPR049559
- PANTHER: PTHR12124 , PTHR12124:SF47
- SUPFAM: SSF47819 , SSF53098
- PROSITE: PS50967
- Gene3D: 1.10.150.80 , 3.30.420.10
- OrthoDB: M1BVM8
- SMR: M1BVM8
- CDD: cd06147
- eggNOG: KOG2206
- STRING: 4113.M1BVM8
- HOGENOM: CLU_010129_4_1_1
Sequences
CDS Sequence
- >PGSC0003DMG400020924
ATGGAGATCGATTCACCTGAAGGTAACGGCGAGGATACGCTAAGCAAAGTCACAAGTGGTCCATTACCATCTGCGGTTACAAAGCTCTCTGGTTCTTCAAGAGGAATCCCCACCGATAGAGACTTTCATTTCTACAACAATTTCAGCGAATTCAGGACTCCCATTTCACAAATCGACATGAAATCTAAGGAAATCTTGGACAAAGTTGGGCAATTATCAGAACTATGGGGAAAACCCATATCGTGTCCGGAGGATCCAGATGACGAGGAGAGCGAAGAATGGCTGGTGAACATAAATGACGATGTTTTGGAGAAACTCGCTTCGTCGTTAGATGAGTTTAAGTTGTTGAGAAAGAAAGAAGAGGAGACTGGAATGAAGATGGAGGATGATTCTGAAAGTGGGTTTCAAGTGGTTGGTAGGAAGAAGAAGAAGAGTGAAGAGAAGGTGAAAGTGGCTATCAAAGGGAAGCCAAAGATTCCATTTCATATACCCACCATCCCTAAGCCACAAGACGCGTATAAAATCATTGTTAACAATACAAATCAGCCATTTGAGCATGTTTGGTTACAGAGAAGCGAGGATGGTTCTAGGTTTGTGCATCCTCTGGAGAAGTTCACTCCGCCAGACTTTGTTGAGACTGCTGGCATTATTGAGCCTGTTAAACCTCCTCCATTGGAGGATACTCCATTCAAGCTTGTGGAAGAGGTTAAAGATCTGAAGCTGTTAGCAAACAAGTTGCGTTCTGTGGATGAGTTTGCAGTTGATTTGGAGCATAACCAATATAGATCTTTTCAAGGATTGACATGCTTGATGCAGATATCAACTAGAACTGAAGATTTTGTTGTTGACACTCTGAAGCTCCGTGTACACATTGGCCCTTATCTGAGAGATGTTTTTAAGGATCACAAGAAGAAGAAGGTGATGCATGGTGCTGATCGCGATATTGTGTGGCTTCAACGTGACTTTGGCATATATGTATGCAATATGTTTGATACTGGCCAGGCCTCGAGGGTTTTGAAATTGGAAAGAAACAGTCTGGAGCATCTGCTGCAACATTTTTGTGGAGTTACAGCGAACAAAGAATATCAGAATGCAGATTGGAGATTACGCCCACTTCCTGCAGAGATGATGAAATATGCTAGAGAAGATACACACTATCTCTTGTACATTTATGATGTTATGAGGATGAAATTGCTATCATCGGATGCTGGCGATGGATCTCCTGAATCTCCTGATGATCCTCTAGTAGAGGTGTACAAGCGCAGTTATGATATATGTATGCAGATGTATGAGAAAGAACTTTTGACTGATACCTCATATCAGCACATATATGGATTACAGGGAGCTGGGTTCAATGCGCAGCAGCTTGCAGTTGTTGCTGGGTTGCATGGTTGGAGGGATGTTATTGCCCGAGCAGAAGATGAAAGTACTGGCTATGTTTTGCCAAACAAAACACTTACTGAAATTGCTAAGCAGATGCCTCTTACCCCAAGCAAATTAAAGGGATTGATGAAATCAAAGCATCCATATGTTGAGCGTAATCTTGGTTCTGTTGTCAGCATCATTAGGGCCTCTGTTCAAAATTCCGCTGCATATGAAGCAGCCGCAGAACAGCTGAAGGAAAGACGCTTAGAATTACGAGCTGAAGAGACTATTGTGGCTACTGAGGGTGCTGAAATTACTGAGTCACCTGGTGACACCTCTGACCGTCGTAATGAATATGGTGGTTTAAAAGGTACTTCCTCGGGACAGGTGGAAGTAACTATTCAGGCAATTAAGAAACCGAGCCGTGGTCTTGGGATGTTACTAGGGAGCACAGCAAAGAGGAAGATGCATCCTGACAAAAAAGAGGCGGAAGAGATCCAAGTGCAGCAGATCAAGTCTTCGGTAAGCCTTCCATTTCATCCATTTTCAGGTAGTATTGAGCAGCTACAGAAAGCTGCAACAGGGCCTGCTAAACCATTGGAAATTAACCATAGAGTGAACGAACCTGTTGCTACTAATTGCAAGACAGATGTTATAACCGTGGAGACTGATTCAGATGATGGGGAATTAGTGAAAGGTGAGCTATCAACTGGAGGACAGGGAAACTCCTCTGCCATGCCTGTAGTTACTTCAAAATTAGAAGATGTTATCTTACTGGAAACTGATTCAGATAGTGAGGAATTAGGCAAAGATGACTCAGAAGTTACTAACAATCAGCCTGAGTGTGGGGATAACAAAAATATAGTTTTTGCTGAGATGGATGAAGGGGGTGAGAATACGCCCCTGTCCATAAATCAAAAAAGTAAGGGAAAGCTTGCTGAGAAACCACAAGCAAATGAAGGTGAGTTGAAGGTTCAGGGTTTTGACTATGAAGCTGCAAGGAAGCAAGTGGTATTTGGAGAAGATCGTGGTAAACAACAGGCGGAAAGAGAAGGTGATGAGTCTCGTAGGAGTAGGAATGATAAAGGTAATAAGAAGGATTTATTCTTAGGTCAGCCACCAAAGATTGAAGAGGCAGCAGAGTTCCAGCAAGGTAGAAGGCGTCAAGCTTTTCCAGCTTCGGGGAATCGAAGCTATACTTTCCGTTAA
Protein Sequence
- >PGSC0003DMG400020924
MEIDSPEGNGEDTLSKVTSGPLPSAVTKLSGSSRGIPTDRDFHFYNNFSEFRTPISQIDMKSKEILDKVGQLSELWGKPISCPEDPDDEESEEWLVNINDDVLEKLASSLDEFKLLRKKEEETGMKMEDDSESGFQVVGRKKKKSEEKVKVAIKGKPKIPFHIPTIPKPQDAYKIIVNNTNQPFEHVWLQRSEDGSRFVHPLEKFTPPDFVETAGIIEPVKPPPLEDTPFKLVEEVKDLKLLANKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRVHIGPYLRDVFKDHKKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERNSLEHLLQHFCGVTANKEYQNADWRLRPLPAEMMKYAREDTHYLLYIYDVMRMKLLSSDAGDGSPESPDDPLVEVYKRSYDICMQMYEKELLTDTSYQHIYGLQGAGFNAQQLAVVAGLHGWRDVIARAEDESTGYVLPNKTLTEIAKQMPLTPSKLKGLMKSKHPYVERNLGSVVSIIRASVQNSAAYEAAAEQLKERRLELRAEETIVATEGAEITESPGDTSDRRNEYGGLKGTSSGQVEVTIQAIKKPSRGLGMLLGSTAKRKMHPDKKEAEEIQVQQIKSSVSLPFHPFSGSIEQLQKAATGPAKPLEINHRVNEPVATNCKTDVITVETDSDDGELVKGELSTGGQGNSSAMPVVTSKLEDVILLETDSDSEELGKDDSEVTNNQPECGDNKNIVFAEMDEGGENTPLSINQKSKGKLAEKPQANEGELKVQGFDYEAARKQVVFGEDRGKQQAEREGDESRRSRNDKGNKKDLFLGQPPKIEEAAEFQQGRRRQAFPASGNRSYTFR