Information report for PGSC0003DMG400014229
Gene Details
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Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Actinidia chinensis: CEY00_Acc17948, CEY00_Acc22118
- Capsicum annuum: T459_10648
- Citrullus lanatus: Cla97C06G128240
- Daucus carota: DCAR_025630
- Juglans regia: Jr02_00090, Jr09_00040
- Lactuca sativa: gene-LSAT_4X85420
- Musa acuminata: Ma06_g09860, Ma10_g12510
- Nicotiana attenuata: A4A49_34164, A4A49_00147
- Populus trichocarpa: POPTR_015G109300v3
- Sesamum indicum: SIN_1010823
- Solanum lycopersicum: Solyc03g118020.3, Solyc03g118010.3
- Vitis vinifera: VIT_00s0283g00020, VIT_14s0068g00720
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: M1B4H0
- RefSeq: XP_006341449.1 , XP_006341450.1
- AlphaFoldDB: M1B4H0
- KEGG: sot:102599872
- OMA: ARCADHH
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF2
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- OrthoDB: M1B4H0
- SMR: M1B4H0
- CDD: cd20443
- eggNOG: KOG2039
- STRING: 4113.M1B4H0
- HOGENOM: CLU_005966_2_0_1
Sequences
CDS Sequence
- >PGSC0003DMG400014229
ATGGCATCAACAGGATGGTTGAAGGGAAGAGTGAAAGCTGTTCCCTCTGGTGACAGTTTGGTGATAATGGGTAGTTCCAAGGCTGAAATCCCCCCTGAAAAATCTATAACCTTAGGATCTCTAATGGCTCCACGTTTGGCACGTCGTGGTGGAGTGGATGAGCCATTTGCATGGCAAAGCAGAGACTTCTTGAGGAAGCTTTGCATTGGAAAGGAAGTCACTTTCAAGGTGGAATATACTGTACCTTCCATAGGGCGAGAATATGGAACTGTTTTTCTTGGTGACAAGAACGTTTCCATGCTAGTTGTTGCTGCAGGCTGGGCCAAGGTCAGGGAGCAGGGTCAACAGAAAGATGCTAATCCCTATTTGAAACCACTGCAAGATGCTGAAGAACAAGCCAAACAACAAGGTCTAGGTCGTTGGAGTAGGGCACCTGGTGCTTCTGAGGCGTCTATTAGGGATCTTCCTCCATCTGCAATTGGTGATTCTAGTAACTTTGATGCAATGGGACTATTGGAGCGAAGTAAAGGCAAGCTTATTGAAGCATTTGTTGAGCAGGTTCGTGATGGAAGTACGCTGCGAGTGTACTTGCTTCCAGACTTCCAGTTCATCCAAGTGTTCGTTGCTGGAATACAGGCACCAACAATGGGAAGAAGAGCAACATCAGAAACTGTTATTAATACTAGTGTTACTTCTGATGAACCAAATGGAGAATCAACTACTGAACAACGTGCAGCTCCGACATCAGCGCAGAGGTTGGCATCCTCAGCTGCATCTGTAATAGAAGTTGCACCTGATCCTTATGGCAGAGAAGCAAAGCATTTTACCGAAACTCGTGTCTTAAATAGAGATGTTCGAATTGTCCTGGAGGGTGTTGACAAGTATAGCAATCTAATTGGCTCAGTGTATTACCCTGATGGAGAATCGGCAAAGGACCTGGGATTGGAGCTTATTGAAAATGGTTATGCTAAATATGTTGATTGGAGTGCAAACATGCTGGAAGTTGAAGCCAAGAAGAAGCTGAAAAGTGCCGAGCTTGAGGCCAAAAAAACTCGCTTAAGAATCTGGACAAACTATGTAGCTCCAGCAACAAATTCCAAGGCTATTCATGACCAAAATTTCACGGGAAAGGTCGTTGAGGTTGTCAACGGAGATTGTCTTGTTATAGCTGATGATTCTCTGCCATTTGGAGATCCATCAGCAGAACGAAGAGTCAATCTTTCAAGTATTAGGTCTCCTAAAATGGGAAATCCTCGTAGAGAAGAGAAGCCTGCTCCCTATGCTCGTGAAGCAAAGGAGTTTTTGAGAAATCGCCTTATCGGAAAACAGGTGCATGTTTCCATGGAGTACTCACGGAAGGTCGGAATGGCAGATGGACCTGCTGCTCCCACCAGTGGTGCAGATTCAAGGGTGATGGATTTTGGAACTGTATTCCTGGCATCCAAAGATGGGGATGATGCATCACCTGCTCCATCTGCTGCAGGCAACCAGTTGGCTGGAGTCAATGTTGCTGAGCTTTTGGTTGCCCGCGGTTTCGCAACTGTTGTTAGACATCGTGATTTTGAAGAACGTTCAAACTATTATGATGCCCTTCTCTCCGCAGAATCACGTGCTACTTCTGGGAAAAAGGGTATTCATTCTCCTAAAGAAGCTCCAGTGATGCATGTAACAGACCTGCTAACGGCAGCGTCAAAGAAAGCTAGAGACTTTTTGCCTTTCTTGCAACGTAACAGGAGGATGTCTGCTGTTGTAGAATATGTCCTCAGTGGTCATAGATTCAAACTGTTCATTCCCAAGGAGACTTGCAGCATTGCTTTCTCTATTTCTGGAGTGAGATGCCCAGGTCGTGATGAGCCCTACTCTGAGGAAGCCATTGCCTTGATGAGGCGGAAGATAATGCAGAGGGATGTTGAGATCGAGGTAGAAACAGTTGACAGAACAGGGACTTTCATTGGAACATTATGGGAATCAAGATCCAATGTGGCGGTGACTCTACTGGAAGCTGGTTTAGCAAAGCTTCAAACTTCTTTTGGAACTGATAGAATCGCCGAAGTTCACCTCCTCATGCAAGCTGAACAGGCCGCCAAAAGGCAGAAATTGAAGATATGGGAGAATTATGTCGAGGGAGAGGAAGTTGTCAGTAGTGGAACAGCTGAAAGACGCCAAAAAGAAGAGGTGAAGGTCACAGTCACTGAAATTCTGGGTGGGGGTAAATTTTACGTTCAGTTGGTTTCCGACCAGAAAGTAGCCGCCATTCAGAAGCAACTTGCTTCTCTAAATCTTCAGGAGGCTCCTGTCATTGGTGCATTTAATCCAAAGAAGGGTGATATGGTTCTTGCTCAATTCAGTGCTGATAATTCATGGAACCGAGCAATGATTGTCAATGCCCCTCGTGGTGCTGTGGAATCTTCCAAAGACAAGTTTGAAGTTTTCTATGTTGATTATGGAAACCAAGAAGTTGTTTCATACAGTCAGTTGCGGCCTCTTGAAGCATCTGTGTCCTCCAGTCCTGGTCTTGCTCAGCTCTGCAGTCTTGCTTATGTTAAAGTTCCTGGGCTAGAAGATGATTATGGTCAGGAGGCAGCATACCGGCTCAGTGAGCTTCTTCTAAGTGGGCCAAAGGAATTTAGAGCTGTTATTGAGGAGAAAGATGCTTCAGGTGGAAAAGTTAAAGGTCAAGGAACAGGAACAGTCTTTCTGGTGACTTTGGTTGATCCTGAAAGTGATATCAGCATAAATGCTACCTTGCTTAAGGAAGGACTTGCTAGGATGGAGAAAAGGAAGAGGTGGGAGCCCAAGGACAAACAACAGGCTCTGGATGAATTGGAGAAGTATCAAACAGAAGCACGAGAAAAGAGGTTCGCGATGTGGGAGTATGGAGATGTCGAGTCAGATGAGGAGGATATCCCTGCTAGGAAACCTGCTGGGAAACGGTGA
Protein Sequence
- >PGSC0003DMG400014229
MASTGWLKGRVKAVPSGDSLVIMGSSKAEIPPEKSITLGSLMAPRLARRGGVDEPFAWQSRDFLRKLCIGKEVTFKVEYTVPSIGREYGTVFLGDKNVSMLVVAAGWAKVREQGQQKDANPYLKPLQDAEEQAKQQGLGRWSRAPGASEASIRDLPPSAIGDSSNFDAMGLLERSKGKLIEAFVEQVRDGSTLRVYLLPDFQFIQVFVAGIQAPTMGRRATSETVINTSVTSDEPNGESTTEQRAAPTSAQRLASSAASVIEVAPDPYGREAKHFTETRVLNRDVRIVLEGVDKYSNLIGSVYYPDGESAKDLGLELIENGYAKYVDWSANMLEVEAKKKLKSAELEAKKTRLRIWTNYVAPATNSKAIHDQNFTGKVVEVVNGDCLVIADDSLPFGDPSAERRVNLSSIRSPKMGNPRREEKPAPYAREAKEFLRNRLIGKQVHVSMEYSRKVGMADGPAAPTSGADSRVMDFGTVFLASKDGDDASPAPSAAGNQLAGVNVAELLVARGFATVVRHRDFEERSNYYDALLSAESRATSGKKGIHSPKEAPVMHVTDLLTAASKKARDFLPFLQRNRRMSAVVEYVLSGHRFKLFIPKETCSIAFSISGVRCPGRDEPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFIGTLWESRSNVAVTLLEAGLAKLQTSFGTDRIAEVHLLMQAEQAAKRQKLKIWENYVEGEEVVSSGTAERRQKEEVKVTVTEILGGGKFYVQLVSDQKVAAIQKQLASLNLQEAPVIGAFNPKKGDMVLAQFSADNSWNRAMIVNAPRGAVESSKDKFEVFYVDYGNQEVVSYSQLRPLEASVSSSPGLAQLCSLAYVKVPGLEDDYGQEAAYRLSELLLSGPKEFRAVIEEKDASGGKVKGQGTGTVFLVTLVDPESDISINATLLKEGLARMEKRKRWEPKDKQQALDELEKYQTEAREKRFAMWEYGDVESDEEDIPARKPAGKR