Information report for PGSC0003DMG400011259
Gene Details
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Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Actinidia chinensis: CEY00_Acc15976
- Capsicum annuum: T459_25176
- Citrullus lanatus: Cla97C05G079940
- Glycine max: Glyma.19G261200, Glyma.03G262100
- Gossypium hirsutum: Gohir.D07G138400, Gohir.A07G133700
- Juglans regia: Jr07_10040
- Manihot esculenta: MANES_05G015200
- Nicotiana attenuata: A4A49_02244
- Populus trichocarpa: POPTR_002G181400v3
- Prunus persica: PRUPE_2G200900
- Sesamum indicum: SIN_1002242
- Solanum lycopersicum: Solyc10g005130.3
- Vitis vinifera: VIT_15s0048g02380
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: M1ASJ7
- RefSeq: XP_006352611.1
- KEGG: sot:102597432
- OMA: CGFHKYF
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- OrthoDB: M1ASJ7
- SMR: M1ASJ7
- CDD: cd00593 , cd18034 , cd18802 , cd19869
- eggNOG: KOG0701
- STRING: 4113.M1ASJ7
- HOGENOM: CLU_000907_4_4_1
Sequences
CDS Sequence
- >PGSC0003DMG400011259
ATGGATGGTGATGGTGGTGGAGTCTCTGACAAACCTTCTTATTGGATTGATGCTTATGAGGACATCTCATGTGATGATCTCATCCAAGATTTTGTTGGGTCGAACACAGTACCCGTTGTGCCATCGAATCAATTGGGTCCGGATGGGAGTCTTGATCCTTGTTTCTTTGGTGGTATTGATGGGATTCTTGAGAAATTAAAGAATGGTGATGGTTCTGTACATTCTGTGGATGGAAACAACAGTAATGTACATAGTGAAGCTTTAGCTGCACCTGGAATTTGTAAGGACAATGGGCCACAAGCTAAAAAGGATGTGGAGCACAACAAAGGTGATTTGGGGAAGAAGTCTTTACAAGAAGGAAATGGATTTTCCAGGCATAAGGAACGAGGTTGTAATGATAAAGAAGAGAGAAATGGAAAAAGGGCGCGGCTTGGTGATGATAGCTACCAGAGGAGAGGCTGTGATAGACCTTTGGCTAGGAAGAGACTTCGTGAGAATGATGAGATCAATAGAGTAGGGAGGGATCAAAGAAAAAGAAGAGAATATCATGGTGGTCGTGGTGGAAGAGATAGGAACTGGAGGGAAGGGAGTGGCTTTTGGGAATGGGACAAAGAAAGGAAAGAGATGGTCTATCGTGTGGGTTCATGGGAAGCTGATAGGAATCGAGAGGGGAAGTTACCAACTGAGAGAAGCCGTGAACCTTCTGGAGCTATTGAGAAGAAAGATGACAAATTAAAGGAACAAGCTCCCAAGGAGGAAGCACGCAAGTATCAGTTGGATGTACTTGAGCATGCCAGAAAGAACAATACAATCGCTTTTCTTGAAACAGGAGCAGGAAAAACGCTTATTGCCATCCTCCTCATGAAGAGTCTATGTAGTGACTTGCAAAAGAAGAACAAGAAAATGCTGGCAGTTTTTCTGGTTCCTAAAGTTCCACTTGTTTATCAGCAAGCAGAAGTTATTCGTGAGCAAACTGGCTATCAAGTTGGCCATTATTGTGGTGAAATGGGCCAAGATTTTTGGGATGCACGAAGGTGGCTGCGTGAGTTCGAAACTAAACAGGTCCTGGTTATGACTGCTCAGATTCTCTTGAACATATTGAGGCACAGTATAATAAAAATGGAAGCAATTAATCTCCTTATTATGGATGAATGCCACCATGCTGTGAAGAAGCATCCATATTCTTTAGTAATGTCTGAGTTCTATCATACAACACAAAAGGAGAAAAGGCCATCTGTTTTTGGCATGACTGCTTCACCTGTTAACTTGAAGGGTGTTTCCAGCCAAGTTGATTGTGCAATAAAGATTCGTAATTTGGAGACTAAATTAGATTCTGTCGTCTTTACCATAAAAGACCGCAAGGAGCTGGAGAAACACGTGCCAATGCCGTCAGAAGTAGTAGTGGAGTATGATAAAGCTGCTAGTCTGTGGTCTTTTCATGAACAAATAAAACAAATGGAATCAGCGGTTGAAGAAGCTGCTCTGTTAAGCTCCAGAAGAAGTAAATGGCAATTTATGGGGGCTTGTGATGCTGGAGCTAGAGGAGAGCTGCGCCAAGTCTATGGTGTTTCTGAAAGAACTGAAAGTGATGGGGCTGCTAATCTAATTCAAAAGTTGAGGGCTATCAACTATGCTCTTGGGGAACTGGGACAGTGGTGTGCCTATAAGGTAGCACATTCTTTTTTGACAGCTCTACAAAATGATGAAAGGGCAAGCTACCAGCTTGATGTCAAGTTTCAAGAATCCTACCTGGATAAGGTTGTCTCTCTCTTGCAATGTCAGCTATCAGAGGGAGCTGTAGCACAAAGTAACTTGAATGGAGAGATGGATAAAGGTGGCAATCCAAATAGTGATAGGCCTGACGAGATGGAGGAGGGCGAGCTTCTTGAAAGTCATGTTGTATCTGTTGGAGAGCATGTAGATGTGATTCTAGGAGCTGCGGTGGCTGATGGGAAAGTGACACCTAAAGTTCAATCATTAATTAAGATTCTTCTCAAGTATCAGCATACTGAGGATTTTCGTGCTATAATATTTGTTGAACGCGTTGTGACTGCATTGGTTCTTCCAAAGGTTTTTGAGGAGCTCCCTTCCCTAAGTTTTATCAATTCATCAAGTTTAATCGGGCATAACAATAGTCAAGAAATGCGAACAGGTCAAATGCAGGACACAATAGCCAAATTTCGAGATGGTCGTATTAATTTGTTAGTCGCTACTAGTGTAGCTGAGGAAGGACTTGACATCCGGCAGTGCAATGTTGTCATTCGGTTTGATCTGGCCAAAACTATTTTGGCGTATATCCAGTCTAGGGGCCGTGCCCGTAAGCCTGGATCAGATTATATTTTGATGGTTGAGAGAGATAATTCATCACATGAAGCATTTCTGAGGAATGCCAGAAACAGTGAAGAAACGTTGCGGAAAGAAGCAATTGAGCGGACTGATATTAGTCATCTCAAAGATGCCTCCAAGTTGATCTCTGCGGAGGCACCAACAGATTCAGTTTATCAGGTGGAGTCCACTGGAGCTGTTGTGAGCTTAAATTCTGCTGTTGGGCTGATCCACTTTTATTGCTCCCAATTACCAAGTGACAGGTACTCGATTCTCCGTCCTGAGTTTATAATGAAGAGTCACGAGAAGTCAGGTTGCCCAACTGAATATTCATGCAGGCTTCAACTGCCCTGCAATGCACCTTTCGAGACACTTGATGGCCCTGTATGCAGCTCAATGCGCCTTGCCCAGCAGGCTGCTTGCTTGGATGCTTGCAAGAAGCTCCACCAGATGGGGGCATTTACGGACATGCTCTTGCCTGACAAGGGAAGTGGGGTGGAGTCAGAGAAAGTTGAACAGGATGAAGAAGGTGTTCCAATTCCTGGAACTTCCAGGCACAGGGAATTTTATCCTGAAGGTGTAGCTGATATTCTGAGGGGTGATTGGATTTTGTCGGGAAAGGATTCTCTTGTCAGCTCAAAGGTCATTCATCTTTATATGTATGCTATCAAATGTGTGAATATTGGCCCCTCGAAGGACCCATTCTTAACTGATGTGTCAGAGTTTGCAATACTGTTTGGCAATGAGCTGGATGCAGAGGTATTATCGATGTCAATGGATTTATTTATTGCTCGAACCGTAGTAACAAAGGCGACTCTTGTCTTCAGAGGGCCAATAGATGTTACAGAGTTTCAGTTGGCGTCCCTTAAGAGCTTTCATGTAAGAATGATGAGCATTGTTTTGGATGTTGATGTTGAGCCGTCCACCACTCCATGGGACCCTGCAAAGGCATATCTATTTGCCCCTGTTACTGGTGATGAATCTGGAGATCCTATAAAAGGTATCAACTGGGATCATATTAAAAAAATTACTGAAACTGGTGTATGGGGCAATCCTCTTCAGAGAGCTCGCCCAGATGTATATCTTGGTACCAATGAGCGTGCTCTTGGTGGAGACAGAAGAGAATATGGCTTTGCGAAATTGCGACATGGCATGGCCGTCGGACTGAAGTCTCATCCTACATATGGTGTTAGAGGTGCTATAGCACACTATGATCTGGTCCAAGCATCTGGTTTGGTCCCTAACCGGAGTAGCCTTGATGATGTTGAAGTTGATTTGAATAAAGACAAGATAATGATGGCTGATTGTTCTCTTAGAGCCGAAGATATTGTAGGAAGAATTGTCACTGCAGCTCACTCTGGAAAGAGATTTTATGTTGATTGCATTCGTAGTGATATGACTGCAGAGAACTCATTTCCAAGGAAAGAAGGTTACCTAGGTCCTCTTGAGTACAGCAGTTATGCTGCTTATTATAAGCAAAAGTATGGAGTTGATTTGGTCTATAAAAAGCAGCCTCTAATAAGAGGGCGCGGTGTTTCATATTGCAAAAACCTTCTGTCACCACGATTTGAACATTCAGAAGAACACGAGGGTGAACTTGAAGAGGCAACTGACAAAACGTATTATGTTTTCCTCCCTCCTGAGCTCTGTGTTTTGCATCCACTTCCTGGATCTCTTGTTCGGGGTGCTCAGAGATTGCCCTCGATCATGAGGAGGATTGAGAGCATGCTGCTTGCTGTTCAGCTTAAGGAAATGATCGGTTACCCTGTCCCAGCACTGAAGATCTTGGAAGCATTGACCGCCGCTTCTTGCCAGGAGACTTTCTGCTATGAAAGAGCCGAACTTCTTGGAGATGCATATCTGAAATGGGTTGTTAGTCGGTATCTTTTCCTTAAGTATCCCCAGAAACATGAAGGCCAACTCACCAGGATGAGACAGCAAATGGTAAGCAACATGGTGCTGTATCAAAATGCCTTGAGTAAGGGAATCCAGTCATACATCCAAGCAGATCGATTTTCTCCATCGAGATGGGCAGCTCCTGGGGTGTTGCCTGTCTATGACGAGGACCTCAATGAGGATGAAACATCGATATTTGATCATGAAACAGCAGAAAATGGTACTGTAGCAGCAAAGGCTCTAGCTGGTGATGAGTTTGAAGATGAGGAAACTGAAGAAGGTGAGCTTGATAATGATTCAGGGTCATATCGTGTACTGTCTAGCAAGACTATGGCTGATGTTGTGGAAGCACTGATTGGAGTATATTACGTTGAGGGTGGAAAGTATGCCGCAAACCACTTCATGAAATGGATTGGGGTTGAGGTTGATTTCGATTTCAATTTCAAAGAGACAGAATACTCTATTAGGTCTTGTAGCATTCCTGAGAATGTACTCAAGAGTGTTGACTTTGATGCATTACAAGGTGCTTTGAACATCAGCTTCAATGATAAAGGCCTACTGCTAGAAGCAATTACCCATGCTTCACGCCCATCTTCTGGGGTCTCCTGTTATCAAAGACTGGAGTTTGTGGGTGATGCAGTATTAGATCATCTCATCACGAGGCACTTGTTCTTTACATACACAGATCTTCCCCCAGGCCGATTGACCGACTTGCGAGCTGCGGCTGTCAACAATGAAAATTTTGCACGTGTTGCTGTTAAGCACAGTCTTCATTTACACCTTCGTCATGCATCCAGTGCTCTAGAAAAACAGATTCGTGACTTTGTGAATGAGGTTAAAAATGAACTATCAAAACCAGGTTTCAACTCCTTTGGTTTGGGAGATTGCAAAGCTCCTAAAGTTCTTGGTGATATTGTTGAATCAATTGCTGGGGCTATTTTTCTAGACAGTGGGTGTAATACTAAATCTGTATGGGAGGTTTTTCAACCACTGTTGCATCCAATGGTTACACCAGAAACACTGCCCATGCATCCAGTTCGAGAATTGCAAGAACGTTGTCAACAAGAAGCTCAAGGCTTAGAGTACAAAGCAACTCGAAGTGGGAATATGGCTACAGTTGAAGTATATGTGGATGGTCTTCAGGTTGGAATGGCGCAGAATCCTCAGAAGAAAATGGCACAGAAGTTGGCGGCCAGGAATGCCCTTGTTGTGTTGAAAGAGAGGGAGGAAGCTGAAGCTAAGAAGGCTGATGATGCAAAGAAAAAGAAGAATGGCAACCCGAGTTTTACTAGGCAGACACTAAATGATATATGCTTACGCAAAAATTGGCCTATGCCACTGTATCGATGTGTGCACGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATATGGAGTACGCGTAAATATTTCAGACAAAGGATTTACAGATGAATGTATCGGGGAACCTATGCCGAGTGTAAAGAAAGCCAAGGATTCCGCAGCAGCTCTTCTGTTGGAACTCTTAAATAGACGGTACTCATAA
Protein Sequence
- >PGSC0003DMG400011259
MDGDGGGVSDKPSYWIDAYEDISCDDLIQDFVGSNTVPVVPSNQLGPDGSLDPCFFGGIDGILEKLKNGDGSVHSVDGNNSNVHSEALAAPGICKDNGPQAKKDVEHNKGDLGKKSLQEGNGFSRHKERGCNDKEERNGKRARLGDDSYQRRGCDRPLARKRLRENDEINRVGRDQRKRREYHGGRGGRDRNWREGSGFWEWDKERKEMVYRVGSWEADRNREGKLPTERSREPSGAIEKKDDKLKEQAPKEEARKYQLDVLEHARKNNTIAFLETGAGKTLIAILLMKSLCSDLQKKNKKMLAVFLVPKVPLVYQQAEVIREQTGYQVGHYCGEMGQDFWDARRWLREFETKQVLVMTAQILLNILRHSIIKMEAINLLIMDECHHAVKKHPYSLVMSEFYHTTQKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSVVFTIKDRKELEKHVPMPSEVVVEYDKAASLWSFHEQIKQMESAVEEAALLSSRRSKWQFMGACDAGARGELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLTALQNDERASYQLDVKFQESYLDKVVSLLQCQLSEGAVAQSNLNGEMDKGGNPNSDRPDEMEEGELLESHVVSVGEHVDVILGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVTALVLPKVFEELPSLSFINSSSLIGHNNSQEMRTGQMQDTIAKFRDGRINLLVATSVAEEGLDIRQCNVVIRFDLAKTILAYIQSRGRARKPGSDYILMVERDNSSHEAFLRNARNSEETLRKEAIERTDISHLKDASKLISAEAPTDSVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMKSHEKSGCPTEYSCRLQLPCNAPFETLDGPVCSSMRLAQQAACLDACKKLHQMGAFTDMLLPDKGSGVESEKVEQDEEGVPIPGTSRHREFYPEGVADILRGDWILSGKDSLVSSKVIHLYMYAIKCVNIGPSKDPFLTDVSEFAILFGNELDAEVLSMSMDLFIARTVVTKATLVFRGPIDVTEFQLASLKSFHVRMMSIVLDVDVEPSTTPWDPAKAYLFAPVTGDESGDPIKGINWDHIKKITETGVWGNPLQRARPDVYLGTNERALGGDRREYGFAKLRHGMAVGLKSHPTYGVRGAIAHYDLVQASGLVPNRSSLDDVEVDLNKDKIMMADCSLRAEDIVGRIVTAAHSGKRFYVDCIRSDMTAENSFPRKEGYLGPLEYSSYAAYYKQKYGVDLVYKKQPLIRGRGVSYCKNLLSPRFEHSEEHEGELEEATDKTYYVFLPPELCVLHPLPGSLVRGAQRLPSIMRRIESMLLAVQLKEMIGYPVPALKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQNALSKGIQSYIQADRFSPSRWAAPGVLPVYDEDLNEDETSIFDHETAENGTVAAKALAGDEFEDEETEEGELDNDSGSYRVLSSKTMADVVEALIGVYYVEGGKYAANHFMKWIGVEVDFDFNFKETEYSIRSCSIPENVLKSVDFDALQGALNISFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLHLHLRHASSALEKQIRDFVNEVKNELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGCNTKSVWEVFQPLLHPMVTPETLPMHPVRELQERCQQEAQGLEYKATRSGNMATVEVYVDGLQVGMAQNPQKKMAQKLAARNALVVLKEREEAEAKKADDAKKKKNGNPSFTRQTLNDICLRKNWPMPLYRCVHEGGPAHAKRFTYGVRVNISDKGFTDECIGEPMPSVKKAKDSAAALLLELLNRRYS