Information report for PAHAL_1G401800
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Oryza sativa: LOC_Os02g51880
- Setaria italica: SETIT_016290mg
- Setaria viridis: SEVIR_1G332000v2
- Triticum aestivum: TraesCS6A02G318300
- Zea mays: GRMZM2G059958
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A2T8KXV3
- EMBL: CM008046
- AlphaFoldDB: A0A2T8KXV3
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
Sequences
CDS Sequence
- >PAHAL_1G401800
ATGGAGGAAGGCAGCGACGCGCAACCGCCGCCCCCACCCCACGCCGAAGCCGCGGAGCAGCCACCCCCCGTCCCAATGGACCAGGACGAGGGCCGGGGAGCAGCCGCAGAACCCATGGAGGACGGAGAAACCGCCGCCGCAGATGCGTCCGAGGCCGCGGATCCCATGGAGGACGGGGAAACGGCAGGGGACTCCACCGCGGCCGCGGAGCCCATGGAGGACGACGCGCCCACGTCCTCCCCGACCCCGTCGGCGCCGTCCGCCACCGCGGCCGTCGACGACTCCACCATCGCGCGGAAGCGGCGCCGCCGGAAGAAGCAGTTCCCCGGTATGATTCCCACGGCCGGCGTCCGCGTCCTCCGTGGATCCTCCTCCTCCTCCGCCCACACCGCGGCGCATCTGACCGGCGTCCCGCGTCGCCGGGGGCGGCCCCCGACCTCCTCCTCCCTCCGCCTCGCCCGGGAGCTCGACTCCGAGGCCCTCATCGCTCTCGCCGCGGGGTTCCCCGCGGACTCCCTCTCCGAGGACGAGATCGTTGCCGCCGTGCTCCCACGCATTGGCGGCGCCGAGCAGGCCAACTACCTCGTCGTTCGCAACCACATCGTCGCGCTCTGGCGCTCTAATCCCCTTTCCCCAGTCGCACCCAACGCGGCGCTTGCTTCCATTCGCGCTGAGCACGCGCTCCTTGTTGCCGCGGCGCATTCCTTCCTGTCCGAGCACGCGTACATCAATTTCGGGCTTGCCCCCGCCGTCCTCTCGCTCCCCCCACGGTCTCCTCCCTCCTTTCCTCCCCCATCTGTCCTCATTATTGGCGCTGGCCTTGCTGGTCTGGGTGCGGCACGCCACCTTATAGCACTAGGCTTCAAGGTGGCCATCATCGAAGGTCGACTCCGACCTGGTGGCCGTGTGTTTACCAAGACAATGCGTTCATCTGCTGCAGAGTATCCTGACACAGTTGCTGCTGCTGACCTTGGAGGCAGCGTGCTCACCGGTATCAATGGGAATCCCCTTGGTGTCATCGCACGGCAGCTTGGATTCCCGCTCCACAAAGTGCGGGACAAATGCCCACTGTATCTTCCAGATGGCCGCCCAGTTGACCCCGACATGGATGCTCGAGTTGAGGCTGCATTTAACCAGCTTCTGGACAAGGTTTGCCAGTTGAGGCAGGTGATTGCAGATGGTGTGCCACATGGTGTTGATTTGTCACTGGGCATGGCACTTGAGGCATTCCGAGCAGCGCATGGTGTTGCAGCTGAGCATGAAGAAAGGATGCTTCTGGACTGGCATCTGGCGAACCTGGAGTATGCTAATGCTGCCCCTCTTGCTGATCTCTCCATGGCCTTCTGGGACCAGGATGATCCATATGAAATGGGCGGAGACCACTGCTTTATTCCTGGTGGAAATTCTCAGTTTGTCCGTGCACTTGCTGATGGCATCCCGATATTCTATGGACAGAATGTGCGAAGGGTACAGTATGGGCGTGATGGTGTGATGGTGCACACTGATAAGCAGTCGTTTCGTGGTGATATGGTTCTCTGTACAGTTCCTCTTGGCGTGCTCAAGAAGGGTGACATCAAGTTTGTGCCTGAGCTACCAGCTCAGAAAAAAGAGGCCATCCAGAGATTGGGTTTTGGTCTGCTTAACAAGGTTGTGATGCTGTTCCCATATGATTTCTGGGATGGTAGGATTGATACATTTGGTCACTTGACAGAAGACTCTTGTCAGCGTGGCGAGTTCTTCCTGTTCTACAGCTATTCTTCTGTCTCAGGAGGGCCATTGCTCATTGCCCTTGTTGCTGGGGAATCTGCAGTCAAGTTTGAGGAGGCTTCACCAATGGAAAATGTTGAGAAGGTGCTGGAAACACTTAGGAAAATCTTTTCTCCCAAGGGGATTGAAATTCCAAACCCATTGCAAGCAATATGCACTCGATGGGGTACCGACAGGTTTACTTATGGATCATACTCATATGTTGCTATTGGCGCCTCTGGTGATGACTATGACATTTTGGCTGAGAGTGTGCATGATAGAGTTTTCTTTGCTGGGGAGGCAACAAATAGGCGGTACCCCGCTACAATGCATGGAGCCCTGCTTAGTGGGTATAGGGAGGCTGCTAACATTTTAAGAGCAGCTAGAAGGAGAGCTAAAAAAGTGGACTCGCCTGAGAAAATGGATATTAATATTGAAGTAAAAGTGGATGTCAACGGTGAAGTCAAAGACAATGTTAAAGATAGCAACATTCGTTTGGATGATCTCTTCCGTTCTCCTGATGATGCATTTGGGGGTTTCTCAGTTCTCCATGATCCATCTACCTCGGAACCCGATTCAATTTCCTTGCTGCGTGTTGGAATTGGTGCTAGAAAGCTAGGTTCTGGTTCACTTTTCCTCTATGGATTGATAATGAGAAAGAATGTACCTGTGCTGGCTGCAATTGAGGGTGATGAACAACGGTTGAGTACAATGTACCGAGATTTTGGGACAAAACTTGTGGGATTGGATAGCTTGGGTGATGCTGGGGAAAGCCTTATCTCTCGGATAAAGGCTGCTTATAGGAAATAA
Protein Sequence
- >PAHAL_1G401800
MEEGSDAQPPPPPHAEAAEQPPPVPMDQDEGRGAAAEPMEDGETAAADASEAADPMEDGETAGDSTAAAEPMEDDAPTSSPTPSAPSATAAVDDSTIARKRRRRKKQFPGMIPTAGVRVLRGSSSSSAHTAAHLTGVPRRRGRPPTSSSLRLARELDSEALIALAAGFPADSLSEDEIVAAVLPRIGGAEQANYLVVRNHIVALWRSNPLSPVAPNAALASIRAEHALLVAAAHSFLSEHAYINFGLAPAVLSLPPRSPPSFPPPSVLIIGAGLAGLGAARHLIALGFKVAIIEGRLRPGGRVFTKTMRSSAAEYPDTVAAADLGGSVLTGINGNPLGVIARQLGFPLHKVRDKCPLYLPDGRPVDPDMDARVEAAFNQLLDKVCQLRQVIADGVPHGVDLSLGMALEAFRAAHGVAAEHEERMLLDWHLANLEYANAAPLADLSMAFWDQDDPYEMGGDHCFIPGGNSQFVRALADGIPIFYGQNVRRVQYGRDGVMVHTDKQSFRGDMVLCTVPLGVLKKGDIKFVPELPAQKKEAIQRLGFGLLNKVVMLFPYDFWDGRIDTFGHLTEDSCQRGEFFLFYSYSSVSGGPLLIALVAGESAVKFEEASPMENVEKVLETLRKIFSPKGIEIPNPLQAICTRWGTDRFTYGSYSYVAIGASGDDYDILAESVHDRVFFAGEATNRRYPATMHGALLSGYREAANILRAARRRAKKVDSPEKMDINIEVKVDVNGEVKDNVKDSNIRLDDLFRSPDDAFGGFSVLHDPSTSEPDSISLLRVGIGARKLGSGSLFLYGLIMRKNVPVLAAIEGDEQRLSTMYRDFGTKLVGLDSLGDAGESLISRIKAAYRK