Information report for OB04G17410
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Hordeum vulgare: HORVU2Hr1G068970
- Oryza sativa: LOC_Os04g31320, OsSWIB
- Saccharum spontaneum: Sspon.02G0033360-1B
Gene Resources
- Pfam: PF02201
- UniProt: J3LX66
- AlphaFoldDB: J3LX66
- OMA: DWVEELM
- InterPro: IPR003121 , IPR011598 , IPR019835 , IPR036638 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47459 , SSF47592
- PROSITE: PS50888 , PS51925
- Gene3D: 1.10.245.10 , 4.10.280.10
- CDD: cd10568
- eggNOG: KOG2570
- STRING: 4533.J3LX66
- HOGENOM: CLU_394519_0_0_1
Sequences
CDS Sequence
- >OB04G17410
ATGGAACACCACCACCTGCTGCAACTGTCGTCGCCGCCGCCGCCGCCGCCGGCGCACCTCACGATGAGCCCTGGCTTCTTCGACGTCGGCGTCGCCGGCAGCGGCGACTGGGTGGAGGAGCTCATGCGTCTCGGAGAGCTGTTCGGCGTCGGCGTCGGCGGCGGCGAGGATGGTGGTGGTAATGCCGCCGCCGTCGTTGAGGATCAGGTGCTGTGCGTGTGGCAGGAATGCGAGGGCGGTGGCTCGCCGGAGCAGCCTAGCTGCGGGGGTGAGGTGAGCGCTCCTTGCGGCGGCGAGGTCGCCTGCCGCGACAACGACGGCGAGAACTCGGCGACGAGGAAGAGGCGGGACCGGTCCAAGACGATCGTGTCGGAGCGGAAGAGGAGGGTCCGCATGAAGGAGAAGCTCTACGAGCTCCGAGCCCTCGTCCCCAACATCACCAAGATGGACAAGGCGTCGATCATCGCCGACGCCGTGGTGTACGTCAAGGACCTGCAGGCGCACGCCAGGAAGCTCAGGGAGGAGGTGGAGAGCTCCACCCTCGGCTGCTCGCCGGACCGCGTCGTGTCAACTCTCACCTTCAAGGTAGCCAGTGAAGCAGAGGATGACGCAGCGGCGATCAGCGAATGCACGGGGAAGCTGGGGGTGATGGCGGCTCTTCTCAAGGAAGGGTTCCGGCCCCAACCAACGCAGTTGGTAGTTAGTATTTGGATTGGAGCCAACCTTTACCAAATCCATGTACTAGCTATTAAGGATGATAGTGAATGGCATTACATATGGGACAATGCATCTTACAAATCAAAGAGAGTTTATGATCTGCACTTTGAACATTTTCAAGCTGAAGTCCCTTTAGTGTTGATCTGGGAAAGCAAGCGCACTATGAAGTACAAAGTTTCCCTGTGGAACAAGAAGCGGAAGCTCCCCGAGAAGCAGCTTCCCGACCGCGTCGCCGCGCTGCTCCCGGAGTCGGCGCTGTACACGCAGCTGCTGGAGTTCGAGGCCCGCGTCGACGCCGCGCTCCACCGCAAGAAGGTGGACATCCAGGAGGCGCTCAAGACGCCGCCGGCGCTGCAGCGCACGCTCCGCATCTACGTCTTCAACACCTTCGCCAACCAGGCGCCCCGCACCATCCCGCCGCCCAAGAACGCCGAGCCGCCCACCTGGTCGCTCAAGATCATCGGCCGCGTGCTCGAGGACGGCGCCGAGCTGGACCCCGCCAGCGTCGTGCCCAAGCACAACCCTGTGTATCCCAAGTTCTCGTCCTTCTTCAAGAGGGTGACGATTGCTCTCGACCCGTCCCTGTACCCGGAGAACCCACTGATCATATGGGAGAATGCGCGGTCCGCTGCCCCCCAGGAAGGGTTTGAGGTGAAGAGGAAAGGAGACAAGGAATTCTCTGCGAATATCCGGCTGGAGATGAACTATAGCCCTGAGAAGTTCAAGCTCTCGCAGCCTCTGATGGAGGTGCTCGGGGTCGAGGTGGACACTCGTGCAAGGGTGATTGCCGCCCTCTGGCAGTACATCAAGGCGAAGAAGCTGCAGAATCCAACTGATCCTTCGTTCTTTATGTGTGATCCTCAATTGAAGAAGGTCTTTGGGGAGGATAAGATGAGGTTTGCGATGCTATCGCAGAAGATATCGCAACATCTGTCTCCTCCGCCACCCATCAACTTGGAGCACAAGATTAAGCTCTCGGGGAATGGTGCGCATGCGAGTGCTTGCTATGATGTGCTGGTGGATGTTCCATTCCCTCTGCAGAAGGAGATGTCTACATTTCTCGCCAACACTGAGAAGCACAAGGACATTGAGGCATGCGATGAGGTGATATCTGCTTCGATCAAGAAGATTCATGAGCACCGCCGGAGGAGGGCATTCTTCCTTGGTTTCAGCCAGTCCCCAGTGGAGTTCATCAATGCGCTGATAGCATCACAGAGTAAAGATTTGAAGTTGGTTGCTGGAGAAGCAAATAGGAATATTGAGAGAGAAAGACGTGCAGACTTCTATAACCAACCATGGGTTGAGGATGCTGTTATAAGATATCTGAACCGCAAACCGGCTAGCGGTAATGAGGGTCCAGGTGGTGGTGCTGGTGGTTCATGA
Protein Sequence
- >OB04G17410
MEHHHLLQLSSPPPPPPAHLTMSPGFFDVGVAGSGDWVEELMRLGELFGVGVGGGEDGGGNAAAVVEDQVLCVWQECEGGGSPEQPSCGGEVSAPCGGEVACRDNDGENSATRKRRDRSKTIVSERKRRVRMKEKLYELRALVPNITKMDKASIIADAVVYVKDLQAHARKLREEVESSTLGCSPDRVVSTLTFKVASEAEDDAAAISECTGKLGVMAALLKEGFRPQPTQLVVSIWIGANLYQIHVLAIKDDSEWHYIWDNASYKSKRVYDLHFEHFQAEVPLVLIWESKRTMKYKVSLWNKKRKLPEKQLPDRVAALLPESALYTQLLEFEARVDAALHRKKVDIQEALKTPPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLKIIGRVLEDGAELDPASVVPKHNPVYPKFSSFFKRVTIALDPSLYPENPLIIWENARSAAPQEGFEVKRKGDKEFSANIRLEMNYSPEKFKLSQPLMEVLGVEVDTRARVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFGEDKMRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHASACYDVLVDVPFPLQKEMSTFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLVAGEANRNIERERRADFYNQPWVEDAVIRYLNRKPASGNEGPGGGAGGS