Information report for Medtr1g050535
Gene Details
|
|
Functional Annotation
- Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
Homologous
- Arabidopsis thaliana — AT3G10390
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A072VTK8
- EMBL: CM001217 , PSQE01000001
- AlphaFoldDB: A0A072VTK8
- KEGG: mtr:25483267
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF260
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A072VTK8
- eggNOG: KOG0029
- STRING: 3880.A0A072VTK8
Sequences
CDS Sequence
- >Medtr1g050535
ATGGATCCTCATTTTTATTTCACTCCACCTTCCCTGTCACCACCGTCACCTCAACTAAACCCTAACCCTAACCCGAATAATATTCAATCCGATTCATCCCCCAATTTGGACCAAAACCCTAACCCTAACCTCACCAATTACCTTGGTTTACCCGTCCCCAAGAAGAGAAGGCGCGGCAGGTCCCAACGCAATCCTTCCTCCTCCTTCCGTTCACCTCTCAACAATGATCTCAGCTCTTCCGCTGTTGCACCTCCACCGCCATCGACTGAGGACTTTTCCGATGACATTATCATGATAAACAAAGAAGCCAAAGCTGAGGCAATGATAGCACTGACAGCTGGTTTTCCTGCAGATTCGTTGTCCGAGGAGGAGATTGAAGCTGGAGTTATCCCTGTCATTGGAGGGATTGAACAGGTGAATTACACTCTCGTTAGGAATCACATTATTGCGAAATGGCGTGAGAATGTTTCGGTTTGGGTTACTAAGGCAATGTTTATTGATTATATACCTCAGCATTATCATTCACTTTTGGACTCTGCTTATAATTATCTTGTATCACATGGTTATATCAATTTTGGTGTTGCTTCCGCTATTAAGGATAAAATGCCAACCGAACCGAGTAAGCCTGGTGTCATTATCATTGGGGCTGGTCTTGCTGGGTTGGCTGCTGCGAGGCAGTTGATGCGGTTTGGGTTTAAAGTGACTGTGTTGGAAGGGAGGAAACGGGCTGGTGGACGGGTTTATACTAAGAAAATGGAGGTAGGGAGTAGGGTCGGCGCGGTTGCTGAGTTAGGTGGGAGTGTTTTGACAGGTACTTTAGGGAATCCTCTTGGGATTGTAGCTAGGCAGTTAGGTGATGTGCTTCATAAGGTGAGAGATAAGTGTCCCCTTTATAGTGTGGACGGAAAGCCGGTTGACCCTGATATGGATGCCAAGGTTGAATCTGCTTTTAATCGTTTGTTAGATAAGATAAGCAGACTTAGGCAATCAATGGGGGAGGTCTCTAATGACGTGTCTCTTGGTGCAGCGCTGCAAACGTTCAGCCAAGTGTATAAGGATGCTGTGAGTGATGAGGAGATGAAGTTGTTTAATTGGCACCTTGCAAATTTGGAATATGCAAATGCTGGTTTACTATCACATCTTTCACTTGCATTTTGGGACCAAGATGATCCGTATGATATGGGAGGAGATCATTGCTTTTTGCCTGGAGGAAACGTAAAGCTGGTTCAAGCCTTGGCTGAGAATGTGCCAATTTTATATGAGAAAACTGTAAATACGATTAGGTACGGTAGTGATGGAGTGCAGGTTATTGCAGGAAGTCAGGTATTTGAGGGTGATATGGCATTGTGTACCGTTCCGCTGGGTGTGTTGAAGAAAGGGTCCATCAAATTTATACCGGAGTTGCCTCAAAGAAAACTTGATGGAATTAAAAGATTGGGTTTTGGTCTACTTAATAAGGTTGCTATGCTCTTTCCTCATGTGTTCTGGGAGATGGATCTCGACACATTCGGGCATCTTTCTGATGATCCAAGTCGTCGCGGAGAATTTTTCCTGTTTTACAGTTATGCAACTGTTGCTGGTGGTCCCCTGTTGATTGCTTTAGTGGCAGGGGAAGCTGCACATAAATTTGAGAGCATGCCCCCTACAGATGCAGTAACAAAGGTTCTTCAAATTCTGAAAGGTATTTATGAACCAAAAGGAATCAATGTTCCTGAGCCTATCCAAACAGTCTGTACTAGATGGGGGAGTGACCCCTTCTGCTTCGGTTCTTACTCTAATGTTGCAGTTGGAGCTTCGGGTGATGATTATGATATTTTAGCCGAAAGTGTGGGGGATGGTAGACTTTTTTTTGCTGGGGAAGCAACTACTAGGCGCTATCCTGCTACCATGCATGGGGCTTTTCTAAGCGGTCTAAGAGAAGCAGCGAATATGGCCCACCATGCGAATATTCGATCAATGAATGTGAAGGTTGAAAAGACCCCTTCAAGCGCTTATTCTTGTGCTTCCCTTCTTGCGGATTTATTTAGAGAACCTGATGTAGAATTTGGGAGTTTTTCTATCATTTTTGCTCAGAAAAATGGAGACCCAAAGTCACCTGCAATCTTGAGGGTAACATTTGGTGAGCATAAAAAGAAATATCACGAAGTTTCCAGACAAGACCAACAACAACATTCAAACAAATTACTTTTTCAGCAGCTTCAGTCGCATTTTAATCAGCAGCAGCAGCAGCAGCTTCATATTTACACTTTGCTGTCAAGACAACAGGCTCTTGACCTAAGAGAAGTAAGGGGTGGTGATGAAATAAGATTGAATTACCTTTCTGAAAAGCTAGGAGTGAAGCTGGTGGGAAGAAAAGGATTGGGGCCGAATGCTGATTCTATCATTGCTTCCATTAAAGCTGAGAGGGAAAATCGTAAACCTGTTTCAACCTCTATGGCTCATAAACCAGGTGTGTCAAATCTAAAAACAGACATTATGAAGCGGAAGATAATCAGAAAGGCAAAGGTGGTGAAGAAAAGCAATGGATCTATACCCCATGCAAGCATGAATGTGAGGAGTGCCTCTAAAGTACCAGAAGAGAATCAGATAATAGATCAAGTGCTTCCTGATGTGCCTGTTTCAGGGAACAATCAAAATGACTTATCAAAGTCAAATCCGTAA
Protein Sequence
- >Medtr1g050535
MDPHFYFTPPSLSPPSPQLNPNPNPNNIQSDSSPNLDQNPNPNLTNYLGLPVPKKRRRGRSQRNPSSSFRSPLNNDLSSSAVAPPPPSTEDFSDDIIMINKEAKAEAMIALTAGFPADSLSEEEIEAGVIPVIGGIEQVNYTLVRNHIIAKWRENVSVWVTKAMFIDYIPQHYHSLLDSAYNYLVSHGYINFGVASAIKDKMPTEPSKPGVIIIGAGLAGLAAARQLMRFGFKVTVLEGRKRAGGRVYTKKMEVGSRVGAVAELGGSVLTGTLGNPLGIVARQLGDVLHKVRDKCPLYSVDGKPVDPDMDAKVESAFNRLLDKISRLRQSMGEVSNDVSLGAALQTFSQVYKDAVSDEEMKLFNWHLANLEYANAGLLSHLSLAFWDQDDPYDMGGDHCFLPGGNVKLVQALAENVPILYEKTVNTIRYGSDGVQVIAGSQVFEGDMALCTVPLGVLKKGSIKFIPELPQRKLDGIKRLGFGLLNKVAMLFPHVFWEMDLDTFGHLSDDPSRRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGSDPFCFGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLSGLREAANMAHHANIRSMNVKVEKTPSSAYSCASLLADLFREPDVEFGSFSIIFAQKNGDPKSPAILRVTFGEHKKKYHEVSRQDQQQHSNKLLFQQLQSHFNQQQQQQLHIYTLLSRQQALDLREVRGGDEIRLNYLSEKLGVKLVGRKGLGPNADSIIASIKAERENRKPVSTSMAHKPGVSNLKTDIMKRKIIRKAKVVKKSNGSIPHASMNVRSASKVPEENQIIDQVLPDVPVSGNNQNDLSKSNP*