Information report for Medtr1g012820
Gene Details
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Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Actinidia chinensis: CEY00_Acc22153
- Beta vulgaris: BVRB_9g219140
- Citrullus lanatus: Cla97C07G139070
- Cucumis melo: MELO3C017848
- Cucumis sativus: CsGy4G001800
- Glycine max: Glyma.07G028000, Glyma.08G214600
- Juglans regia: Jr12_20240, Jr12_20250
- Lactuca sativa: gene-LSAT_5X8840
- Manihot esculenta: MANES_04G108600
- Nicotiana attenuata: A4A49_33343
- Prunus persica: PRUPE_3G093100
- Rosa chinensis: RchiOBHm_Chr2g0134371
- Sesamum indicum: SIN_1021914
Gene Resources
- Pfam: PF00400
- UniProt: A0A072VCU4
- RefSeq: XP_013465803.1
- EMBL: CM001217
- AlphaFoldDB: A0A072VCU4
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR015943 , IPR027728 , IPR036322 , IPR048419 , IPR054080
- PANTHER: PTHR44083 , PTHR44083:SF30
- SUPFAM: SSF50978
- PROSITE: PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
- STRING: 3880.A0A072VCU4
- HOGENOM: CLU_369789_0_0_1
Sequences
CDS Sequence
- >Medtr1g012820
ATGTATAACTTCAACGAGGAGGTTCTGCTGTTCTTCCTGTTACACTGTTTTACAGAAGAAGGTTTAAAGGAAACAGTACACACGTTTGAGCGTGAAAGTGGGTTATACTTTGACTTTAAATATTTTGAGGAGGTGGTACTTACAGGCCGGTGGGATGAAGTTGAGAAATATCTTTCTGGATTTACAAAAGTTGAAGACAATAATCATTCAATTAAAATATACTTTGAATTGAGAAAACAAAGATACTTCGAGGCTTTAGACAGCAACGATCAAAGCAAGGCTATAGAAATCCTTACGAAGGATCTAAAAGTCTTCCGTTCAAGAAATGAGGAAGTATTTAAAGAATTGACTCAATTATTGACATATAACAACATAAGGGAACATGAATTACTTTCAACATATCAAGATGCAATTTCTTCAAGAAAGATTGTGATGAATGAAATTAAGGAAATCATAGAGCAACATCCTATGCTCAAAGGAAAATTGAAATTTCCTGATATTGATTGTCAGAGGCTAAAGCATCTTCTAAATGCAAGCTTAAATTGGCAGCATCAAAATAATGCTCCAGCTTCTCCAGAACATGGCCTCTTTATGAATCATGTCAATCATTTCATACCATCTACTGCTGCTGCAATAAATCAAGGAACAGCTTTGAATAATCTTGGGGTACCTAGTGAGTGTTATATCCGTGAGAATCGGAAGAGTGGTAAAAATTTGGAGGACCTGCAACCTGATTTAATTGAAAAATCCCACAAAATATCAGAAAGTGTATTTCAGATTTGTACACCATCTCAATGCCATATGTTGCTACTTCCTAAACAGCCCGAAGAAAACAAGATCGTTAGACTCGCTTACACAAATTCGGGAAATGGCATTTTGGCATTGACATCAAATGGTAATCATCTACTTTGGTTATGGACACATACTAGCATTGATATGGGAGCCAAGGCAACAGCACAAGTTCATCCTCAATTGGCCAAAAATGGTTTGGAATTCATGAGCAATGACCTTACAAATGCCAATCGTGAAGATTTAGTTTCTTGTTTTGCTATATCAAAAGCAGATTCTTATCTCTTATCAACCTCAGGAGGGTTGGTTTCTTTGTTCAATATGGTATCATTTAAGACTCTAGTAACTTTCATGCCACCTCCACCAATGGTAACAAGTCTTGCCTTCTATCCTAAAGATAATAATACTTTTCTTATTGGCTTGGATGACTCCAGTATACGTGTATACAATATTCACAAGCATGATGAGGTTCAAAAGCTTGAGGGTCATTCTAAACGAGTTTCTGCTCTTGCCTTCTCAAATACTTTGAATATACTTGTTTCTGCTGATGCAAGCCCTCAGATTATTGTATGGGATAGCAGTAGCTGGGAAAAATTGAGAGAAAGAAACTTGCAAATAGATGGACCAAATGTGCCACAAATGTTTTCTGAAACTCACATTCAATTTCACCCTGATCAGCAAAATTTTCTTTTTGTACATAAAATTCATCTTGCAATTTATGAAGCAACAGAACTAAAATGTGTCAACCAGTGGGATTCAAATTTTCCAACAGTTATCTGCCAAGCAACATTCTCATCTAATGGTCAAATGGTGTATGCTTGTTTTCTTGATGGGAATTTGGCAATATTTGATGCATCAAATTTTCAAATGCATTATAACATTCAGCCTTCTGTTTACCACCTTTCATCAATTCCCAGTGTGAAAATCTACCCAACTGTTTTAGCTGCACATCCACAGAAACCAAACCAATTTGCAGTAGGGTTAACCGATGGTTGTGTTTATGTGTTTGAGCCAAAGGAACCATGTGGTAATTGGATCATGTCTCAAGTTGATAAGGAAAAAGCTAACAGCATAGGGAGTCAAGGTTGA
Protein Sequence
- >Medtr1g012820
MYNFNEEVLLFFLLHCFTEEGLKETVHTFERESGLYFDFKYFEEVVLTGRWDEVEKYLSGFTKVEDNNHSIKIYFELRKQRYFEALDSNDQSKAIEILTKDLKVFRSRNEEVFKELTQLLTYNNIREHELLSTYQDAISSRKIVMNEIKEIIEQHPMLKGKLKFPDIDCQRLKHLLNASLNWQHQNNAPASPEHGLFMNHVNHFIPSTAAAINQGTALNNLGVPSECYIRENRKSGKNLEDLQPDLIEKSHKISESVFQICTPSQCHMLLLPKQPEENKIVRLAYTNSGNGILALTSNGNHLLWLWTHTSIDMGAKATAQVHPQLAKNGLEFMSNDLTNANREDLVSCFAISKADSYLLSTSGGLVSLFNMVSFKTLVTFMPPPPMVTSLAFYPKDNNTFLIGLDDSSIRVYNIHKHDEVQKLEGHSKRVSALAFSNTLNILVSADASPQIIVWDSSSWEKLRERNLQIDGPNVPQMFSETHIQFHPDQQNFLFVHKIHLAIYEATELKCVNQWDSNFPTVICQATFSSNGQMVYACFLDGNLAIFDASNFQMHYNIQPSVYHLSSIPSVKIYPTVLAAHPQKPNQFAVGLTDGCVYVFEPKEPCGNWIMSQVDKEKANSIGSQG*