Information report for Medtr1g010040
Gene Details
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Functional Annotation
- Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.
Homologous
- Arabidopsis thaliana — AT3G49600
Gene Resources
- Pfam: PF00443
- UniProt: A0A072VDC3
- RefSeq: XP_013465750.1
- EMBL: CM001217 , PSQE01000001
- AlphaFoldDB: A0A072VDC3
- KEGG: mtr:25481892
- InterPro: IPR001394 , IPR006615 , IPR018200 , IPR028889 , IPR029071 , IPR033841 , IPR035927 , IPR038765 , IPR044743 , IPR050164
- PANTHER: PTHR24006 , PTHR24006:SF722
- SUPFAM: SSF143791 , SSF54001 , SSF54236
- PROSITE: PS00972 , PS00973 , PS50235 , PS51283
- Gene3D: 3.10.20.90 , 3.30.2230.10 , 3.90.70.10
- OrthoDB: A0A072VDC3
- CDD: cd01795 , cd02668
- STRING: 3880.A0A072VDC3
- HOGENOM: CLU_010287_0_0_1
Sequences
CDS Sequence
- >Medtr1g010040
ATGAGCAGAACAACGACTCGGGGTAAAAATAAAAGACTGAGACAAGGGGATGATGATACCGGAACTTCAGAAATATTGAGGAAAATATACAAAACAGGCGTAGCAACTGATGATGATATGAACAAACTGTATATGATTACAAAGCCAGTCTGTTCAGGTTGTCGTGTTAATACTAAAGACAATCCGAATTGCTTCTGTGCATTGGTTCCGCCTCCAAGTGGAACGCGGAAGTCTGGCATATGGCAGAAGATATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGAATCTGCTAATTCACCCGCAGGACTCACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACGTTTTCGAGAAGGATTATTTTCTGTAGAACCAGATATTTTTCAGCAACAACCAGTGTTAGATCAACTAGCTCGGCTTTTTGCTCAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACGCTGGAGTTGGACAATGAAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTATCATTGCTTGAGCGTTGCCTTAGCCGTTCCGAAATTTCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCACGTGACAACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGACGAGAGCTTAGATGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGGGTTGATGCTACTCGCAGCATCAAGCTGCGAACATTACCTGATGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTCCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTTCCCGCTGAACTTAGTATGCACCACAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTTCTGATACACAAGGGAACTGCAGCTAATAGTGGTCATTACATTGCACACATCAAGGATGTGAACACAGGGCAATGGTGGGAATTTGATGATGAGCTTGTTACTAACTTGGGCCGTTGTCCATTTGCCGAAGAAGCTTCATGCTCTGCTTCTAAATCTGTTAAGAATGATGTGAATCATTCTAATTTCTCTGAAGCAAGGGTAGCTGACAGTAATGGAAGTGCTTCAAATGTAAAAGTTTCACAATCTTTACCCATGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAGCATACCAAAATTTTTAGTGAGAACGGGGGAATGGAAACTAGTGCTAATCATACTGAAACAGTCGATGTTCCAATTACTGCACAAGATAATGATTGTCTTCCTTCTCATTTTTGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATACTTGCCAGCAGTACAACCATAGGAAAGAGGTAGAATTGAGTCGTATCAGTGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTGGAGCAACCGTATTTTTGGATTTATAGCGACTGGCTTCGCCAATGGGCGGAGAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACACGGTAAAGTCCCAGTGTCAAAGGTTACTTCGACAAAACGACTGTCTTCTAAAGCATGGGATAAGTTACTGTCTAAGTATGGTGGAGGGCCAACACTTTCTCATGAGGACTGCTGTTTGGACTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCAGACACTTATCGGCATCAAAGAGAATCATTTAAGCAACTTGCACGGGATATTCTTGATGGAAAAAACGAAGATGGAAAGTACTACGTGTCTAGATCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTTGTCGATGCTCCATCTGAAGCTGATTCTGGACCAACAGCGGCTATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCAACTGGTGCTAAGCGGGTGCTTGTTCCTGAGGGTTTTTGGCTCTTCTTATATGAAGATGCAACTTCTGTGAAAAGTGATGATCTTCTGGTCTGCCCTACGTTTCCTTTAGACTCCAAAGAGTGCTCTGAATGCAATAGTGAATTATCTGAAGTGTTTTGCATGGAGGACTCTATGAGGTTATTAAAACAAAGGCAGCGTCAGAGTCATGAGAAGCTGTTCAATGGGAAAAGTATGCCTCTCTCTCTAGATTGCACATATTTCTTAGTTCCTTCCTCTTGGATTTCAAAATGGAGAACTTATATCAACCCAGCTGTCAAGAATTCTGACACACCTGAAACATTAAATGTGGTGATTGGTGCACTGCTCTGCGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTCTCAGACGTGGTGCTATAATTCCAAGGGAGTCTTCTGCAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGTTTCTGCGAAGAATGGGGTGCTACTGAAACCCAAGGAGTATCTGCAAAGATTGAGAAAATTAATGATTCGGTGAATGCTACAGCTGGATCTTGTGAAGAGATGGCAATATGTGAGGACCAGTTGGCCAACTGGGATAAGGGGAATAATGAAAGTGGGAATGGTCAATTTTTGATCAAGACTTGTCCCGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGCGAGTTAGTGCATAAACTTAATTATTCCAATGAGGATATATGTGTAATTCTTGTACGCGGAAAAGAGGTCCCTAGATCAATCTTGGAGGCTTCAAAGGGATTTGTTGAAGCAGATCGACGGGTTTCTAAACGCTCCAGGAAGATTAAAAATGGGAGTTCAATTAATCTAAAAGTGTCTGCTTCAACAACAATTTACCAGCTGAAAATGATGATATGGGAATCATTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATATAACAATCGATCACATTGACGAAAATACTACACTTGTGGACGTTAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTGTGTAACGAGAAAAAGGATACACAGCATACCGAGGGAGGGTTTCGTGGAACACTTTTGACTTCAAATGTTTCATCTCAGGTTGTGTAG
Protein Sequence
- >Medtr1g010040
MSRTTTRGKNKRLRQGDDDTGTSEILRKIYKTGVATDDDMNKLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKISDFVDSLGFDPNTELRESANSPAGLTNLGATCYANSILQCLYMNKRFREGLFSVEPDIFQQQPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLSRSEISKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCPFAEEASCSASKSVKNDVNHSNFSEARVADSNGSASNVKVSQSLPMETFSSSDAYMLMYHLKHTKIFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRKEVELSRISERREEVRSVLAEAPVQPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSTKRLSSKAWDKLLSKYGGGPTLSHEDCCLDCLIDGARNVVSADTYRHQRESFKQLARDILDGKNEDGKYYVSRSWLQQWWKRKVVDAPSEADSGPTAAISCPHGQLMPEQATGAKRVLVPEGFWLFLYEDATSVKSDDLLVCPTFPLDSKECSECNSELSEVFCMEDSMRLLKQRQRQSHEKLFNGKSMPLSLDCTYFLVPSSWISKWRTYINPAVKNSDTPETLNVVIGALLCEKHSRLIERPPELILRRGAIIPRESSAGGLTIISENDWKCFCEEWGATETQGVSAKIEKINDSVNATAGSCEEMAICEDQLANWDKGNNESGNGQFLIKTCPEVCESCIGEKESCELVHKLNYSNEDICVILVRGKEVPRSILEASKGFVEADRRVSKRSRKIKNGSSINLKVSASTTIYQLKMMIWESFGVVKENQILQKGDITIDHIDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKDTQHTEGGFRGTLLTSNVSSQVV*