Information report for LR48_Vigan08g140200
Gene Details
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Functional Annotation
- Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.
Homologous
- Actinidia chinensis: CEY00_Acc30068
- Capsicum annuum: T459_28656
- Citrullus lanatus: Cla97C02G048110
- Cucumis sativus: CsGy6G012460
- Glycine max: Glyma.12G087000, Glyma.11G237700
- Gossypium hirsutum: Gohir.A05G082500
- Juglans regia: Jr14_17170
- Manihot esculenta: MANES_04G006100
- Medicago truncatula: Medtr4g054980
- Nicotiana attenuata: A4A49_19906
- Prunus persica: PRUPE_6G124200
- Rosa chinensis: RchiOBHm_Chr5g0054631
- Solanum lycopersicum: Solyc11g067140.2
Gene Resources
- Pfam: PF00136 PF03104 PF08490
- UniProt: A0A0L9V693
- EMBL: CM003378
- AlphaFoldDB: A0A0L9V693
- OMA: EREECSI
- InterPro: IPR006133 , IPR006134 , IPR006172 , IPR012337 , IPR023211 , IPR029703 , IPR036397 , IPR043502
- PANTHER: PTHR10670 , PTHR10670:SF0
- SUPFAM: SSF53098 , SSF56672
- Gene3D: 3.30.342.10 , 3.30.420.10 , 3.90.1600.10
- CDD: cd05779
- STRING: 3914.A0A0L9V693
Sequences
CDS Sequence
- >LR48_Vigan08g140200
ATGAGCGGGGATGGTCGACGACGTGACCGGAGAGATACCAGAGCACCGAAAAAGCGGAAGCTAAACCGCAACCCCGAGGATGAACTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGTGAAAAGCGGCTCGGATGGCTACTCACTCTTGCATCCTCATCTGTTCAGGATGAAAACAGTTACAAAGAATACAGTTGTGTCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTACTTCTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTACGAAGGTCAGATTGCTGATATTGAAATTATAGACAAAGAAGACCTGGATCTTAAAAATCATTTATCAGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTACAACAATTGATGGATGTGAAGAGAGACCTGATGCCTTCTGTTGAAAGAAATAAGGCTAAGTCTGATACTGCAGAAGCCTTTGTATCCATGTCAACAGAAAGAAGAGAACATAGACCTCAGGACTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAACGGGGTTAAACTTGAAAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGAGTTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGGTAGATGGTCAGGGGTATTTAATCATAAATAGGGAGTGTGTCGGGGATGATATAGAAGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAAGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTCTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCTTGGGTTGAAAATGAGTGATGAATTGGGGTTCAAATGCGACACAAACCAAGGGGAATGTCGTGCTAAATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCTTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCAGTGGAGGTGCATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATAAAACTTATGTTCATCCCTTTATATTCTCTCTTGCAACCATTATACCTATGCCACCCGACGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAGTCTGATCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACATACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGACATCCCATCTAGTTTTACATTAGAGCCATCTGCTTTTCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGCAAGATGGATTTGGAATCTGTTTCTAATTATGACGAAGTAAGAAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGTGCCAACACGTGAAGAATGTCCCCTCATTTATCACCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCATCAATTGTTACCGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTTTGGCGCGGAGAAACATTCATTGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAAATAGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTACCCCGCTATTCTGAGAAGAGGTCATCAAAATCCTTTCTTGACCTTCCCAAGTCAGAGCAAATATCAAGATTGAAAGATCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAAATTCGTGAAGCAGGAATCTGCATGCGGGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGATTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATAATTCAGAATGCCCGCTTGCTAGTAGAAAAAATAGGAAAACCACTTGAACTAGATACAGATGGTATTTGGTGTGCACTACCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACCCAAAGAAGAAGTTCACAATATCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAATATCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGGCCATACAAGAGACTAAAGAACATGGAGTTGTCCCTAAGGAGGTTGAAGGCAGAGTTGAGTGGAATACGCCATGAAGTCCAAGCTCCAAATGGGAAGGGACTGCTGAAACCGAACGATAGTGGACTAACGGATCCGAATGTGAGCGAACTGCCAGAGCTGAACGATAGCAGACTGCTGGATGCGAACGTGAAAGAACGGACGGAACCTACAGAGAGAGGACTTACCGAGCCGAACGGGAGGAGACGGCCAAAACCGAACGTGAGAAAACTACCTGAACCAAACGGTCTAGTATTGGAAGGAAGAATGAAGGCTTTGGAAGGAAGGGCAGATGGAAGAATCAATACCCTGGAGGGAACAATGGAGTCTGTGAAGAGATGGGCCGACAAAAAGAACAGGGGGCTTGCAGTGTTTGGTACACTGGCAGAAGGAAGAGAGCGACGTGAAGTACTGAAAGACATTGAAAACCATTCCCTCAGGGCTTATGATTCAGGAGAAGTGGTAACCAGAATGCTGGACGAAGAATGGAAGACATTAGAGAAGGTTTTACCACCACCCGAACCTCCAGACATGAATTGA
Protein Sequence
- >LR48_Vigan08g140200
MSGDGRRRDRRDTRAPKKRKLNRNPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVQDENSYKEYSCVDLYFVTQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIDKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPSVERNKAKSDTAEAFVSMSTERREHRPQDFLDCLTDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVKLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGLKMSDELGFKCDTNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVHPEDMVRFAKEKPQMMASYSVSDAVATYYLYKTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAFQQLINNLDRDLQYAITVEGKMDLESVSNYDEVRNAIMEKLVKLRDVPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFIAKKSDYYALKTQIESEFVDDSENNKSLPRYSEKRSSKSFLDLPKSEQISRLKDRLKKYCQKAYKRVLDKPVTEIREAGICMRENPFYVDTVRSFRDRRYEYKGLNKIWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKRLKNMELSLRRLKAELSGIRHEVQAPNGKGLLKPNDSGLTDPNVSELPELNDSRLLDANVKERTEPTERGLTEPNGRRRPKPNVRKLPEPNGLVLEGRMKALEGRADGRINTLEGTMESVKRWADKKNRGLAVFGTLAEGRERREVLKDIENHSLRAYDSGEVVTRMLDEEWKTLEKVLPPPEPPDMN