Information report for LR48_Vigan08g140100
Gene Details
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Functional Annotation
- Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.
Homologous
- Actinidia chinensis: CEY00_Acc30068
- Citrullus lanatus: Cla97C02G048110
- Cucumis sativus: CsGy6G012460
- Glycine max: Glyma.12G087000, Glyma.11G237700
- Gossypium hirsutum: Gohir.D05G085400, Gohir.A05G082500
- Juglans regia: Jr14_17170
- Manihot esculenta: MANES_04G006100
- Medicago truncatula: Medtr4g054980
- Populus trichocarpa: POPTR_004G185700v3
- Prunus avium: Pav_sc0000013.1_g050.1.mk
- Prunus persica: PRUPE_6G124200
- Rosa chinensis: RchiOBHm_Chr5g0054631
- Vitis vinifera: VIT_06s0061g01610
Gene Resources
- Pfam: PF00136 PF03104 PF08490
- UniProt: A0A0L9V7C4
- EMBL: CM003378
- AlphaFoldDB: A0A0L9V7C4
- OMA: PISHKHS
- InterPro: IPR013697 , IPR029703 , IPR042087 , IPR043502 , IPR054475 , IPR055191
- PANTHER: PTHR10670 , PTHR10670:SF0
- SUPFAM: SSF56672
- Gene3D: 1.10.132.60
- STRING: 3914.A0A0L9V7C4
Sequences
CDS Sequence
- >LR48_Vigan08g140100
ATGATCCTTCCTGCTTCAAAGGAAGAAGGAATTTTGATTAAGAAGCGATATGCTGTTTTTAATGATGACGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGAACCAGGGAAAGGATATCGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACGGCTAAACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAAGTTTCAAACCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCACAAAAAAGTTCGGGAGAAGGAGGACAAATTTCGCCAACGGAAAATAGTTGATGCCTTTAAACCAATGAACAAGAACGAGCACTTGAAAAAGCTTAATGACTCAAATCGTGTCTCTCTTGTGATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGGGTAGGAGTTCTACTTACGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCGAGGAAGCTCAGTGATCAACAAGATTTAGAGCAAGAGCATAGTAAAGATAATAGCAGCAAGAAAAATCTACTTTCACCACCACAACAAGATGAAACGTATGAAAATATAGACAGAAATGTAGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATTCTGGAAAGAAGAAAGAAGCAAAGATTGGAGAAATCAAAGATATCTAATCGCATGAATGGTGTTTCTGAACAAATAAATGGTAAGAGGAATCTAGGAAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCATTGGCAGATAATACAATTAGTTCCCAGTTCACTGATAGGCCAATTTGTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCTCCAATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGAATCTTCCTCATGGAAGGCTGAATTATAACTTATATGAGGTCTCAATTAGTGAAATTCAATATGGGGAAGTGAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATATTGAGGGAATATATGAAACAAAGGTGCCACTGGAGTTTAATGCATTAATCCAGCTTGGTTGCGTATGTAAGGTGGATAAAACTGCCAATAAACGTAGTCTGCATGAACCATGGAATTTGAGTGAATTGCACATGAAGACTACGACAGAATGTGTTTATCTTGAACAGTCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATTACCGACTTTTCTTGAACGACAATTTCATGATGCTTGCCAGGCTTTGTCTATTGACCCACCTCCGAGGAATGACATTAATTTTAAGGTGGACTATGTGGCCCATGTCAAGGATGCTGAAACAGTGATGCAAAGAGCAATAAATAGTCACAGTCACGGAAGGGAAAATCATGTGCCTATGGTTGCTGTCATTGAATGCCCTAATGTTCAATTAGTAAAATTGGGCATCCGTGCTCTAGATGATTTTCCATGCCTGAGTGTTCCTTACAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGTTGTGCTGCATCAGTCCGATGGTTAAATGAAAGAATTGCTCTCTCAAGATATGCCCATGTACCCCTGGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGGGCGTTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGGCGAACAGAACTTTTTTGTTGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAGTACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCACGAACATGATTCTGGAGCATTTTCTATGAATGATCAGAATGGTTTTGATGAGTCTACCTCTTGTGCACATGCCTTTCGAGTCCTTAAGCAGTTGATCCAGCGTTGCCTAGCAGATGCAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATCTGTACAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCATCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTATTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATTTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGCTAAGAACTATACAATCTAGGGATTTATTTGAATGGATTGAGCTTGAACCACTACAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTACGGTGGAATACCAGTAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCAAGCTGGAACATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTTAAGGATGGTGACACCTGCACTCCATCAATAAGCATTGGAGCTGCAGCTGCTTTTGAATCAGAAATAACAGAGTATATCAAAGAACAGATTAGCTCTTACTTTGCGGACAAACTGCTGGGAATTGTTCACGATATTAGTCTTCATATGAAGGGGGTGAGCAGATCAGAAAACAACCAGAGTATATCACCAGGCCCTGAATTACACAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCTCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTGTTGAGAAAGAATTTGCTAAAATATGTTGGTGTTAGAGAGTTTGCTCCCGAAGCCGAGTTTCATGATCCTTGTCATTCATTCGTCTTATCCAACGTCATATGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGGGATTTGGCTTTATTAACTGAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACTGTAAGACAAAGAGAACGACTATACCACCTGCAAGATGTGGTGTGTATCAAGTGCCATCAGGTGAAAGCTGCGCATTTGGCAGAACAATGCGCATGTGCAGGCTCGTTTAGTTGCAAGGAAGATGCAAATGAATTTCGTAGAAAGATGCAGGTTTTCTTTAACATAGCATCTCGTCAGAAATTCCAGCTTCTCCTAGAGTGTACCTCTTGGATTTTAGAACTTAGATAA
Protein Sequence
- >LR48_Vigan08g140100
MILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYVRKWCKVSNPVPRVAHPDWLHKKVREKEDKFRQRKIVDAFKPMNKNEHLKKLNDSNRVSLVMDDEILNELEDFGNKGRSSTYGPRPIIRHYEANNEQNSRKLSDQQDLEQEHSKDNSSKKNLLSPPQQDETYENIDRNVDYQGWLQVKKRMWKNILERRKKQRLEKSKISNRMNGVSEQINGKRNLGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFVAWVVVDGSMHKIPVSVPRVFYLNSRSPITEEFMGKRVNKNLPHGRLNYNLYEVSISEIQYGEVSKKLATLLADPDIEGIYETKVPLEFNALIQLGCVCKVDKTANKRSLHEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLLPTFLERQFHDACQALSIDPPPRNDINFKVDYVAHVKDAETVMQRAINSHSHGRENHVPMVAVIECPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQTAGKVGMQRCAASVRWLNERIALSRYAHVPLGNFELDWLIFMADIFFSRALRDNQQVLWISDDGLPDLGGINGEQNFFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPVKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVFIVSQFMYIPWNYAQNQAQIRASFKDGDTCTPSISIGAAAAFESEITEYIKEQISSYFADKLLGIVHDISLHMKGVSRSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVGVREFAPEAEFHDPCHSFVLSNVICSYCNDCRDLDLCRDLALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDVVCIKCHQVKAAHLAEQCACAGSFSCKEDANEFRRKMQVFFNIASRQKFQLLLECTSWILELR