Information report for LR48_Vigan03g047900
Gene Details
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Functional Annotation
- Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Homologous
- Glycine max: Glyma.18G234700, Glyma.09G257900, Glyma.07G069400, Glyma.16G035100
- Manihot esculenta: MANES_01G255300
- Medicago truncatula: Medtr7g078090, Medtr8g030550
- Populus trichocarpa: POPTR_002G160900v3
- Prunus avium: Pav_sc0000254.1_g1560.1.mk
- Prunus persica: PRUPE_2G172900
- Vitis vinifera: VIT_15s0046g02290
Gene Resources
- Pfam: PF00271 PF00176
- UniProt: A0A0L9U2P4
- EMBL: CM003373
- OMA: PAKMQYI
- InterPro: IPR000330 , IPR001487 , IPR001650 , IPR014001 , IPR014978 , IPR027417 , IPR036427 , IPR038718 , IPR049730
- PANTHER: PTHR10799
- SUPFAM: SSF47370 , SSF52540
- PROSITE: PS51192 , PS51194 , PS51666
- Gene3D: 1.20.5.170 , 3.40.50.10810 , 3.40.50.300
- CDD: cd18793
- STRING: 3914.A0A0L9U2P4
Sequences
CDS Sequence
- >LR48_Vigan03g047900
ATGCAACTGCCTCAACAGTCTCGGAAATTTGTTGATCTAGCTCAGCATGGATCCAACCAGGGTCAAGGTGTTGAGCAGCAAATGCTAAATCCTGCACAAGCAGCATATTTTCAATATGCCCTGCAGGCTTCACAACAAAAGTCTGCTTTGGCAATGCAGCAACCTAAAATGGGAATGCTGGGCTCTTCATCTGTAAAGGATCAGGACATGCGAATGGGAAATCTGAAAATGCAGGAGCTTATGTCCATGCAGGCAGTAAATCATGCCCAAGCATCATCGTCTAGAAATTCATCTGACCATTTTAATCATGGGGAAAAACGGGTAGAGCAAGGGCAGCAGCTAGCACCTGCTAGAAAGAGTGAAGGAAATCCTTCAAGTCAGGGACCAGCTGTTGGAAATATAGTACCTGGAAACATTATAAGACCTGTGCAAGCTCTGGCAAATCAACAGAACATCTCAAACACTATGAACAACCAGATTGCAATGTCTGCTCAATTGCGGGCTGTGCAGGCATGGGCACATGAACAAAATATTGATATGTCACATCCTGCAAATGCTCAGTTAATGGCTCAGCTTATTCCATTGATGCAATCAAGGATGGTTCAACAACCGAAGGTAAATGATACTAACTCAGGTGCACAGTCATCACCTGTCCCCGTTTCAAACCAGCAGGTTACTTCTCCAGCAGTGGCAAGTGAAAGTTCAGCGCGTGCTAATTCATCTGGCGATGTGTCTGCACAGTCAGGTTCTGGGAAAGGCAGGCAGATGGCTCCACCCAACCATTTGAGCCCACCAATTAGTGCTGGTATAGCCAGTACCTCTAGTGACATGACTGTGCAGCAATTCAGTCTTCATAGCAGAGACACTCAAGGATCTTTGAAGCAATCAGTTCTAACTGGAAATGGAATGCATCCACAGCAGACCTCAGCAAACATGAACATTGGTGCAGATCATCCTCTGAATGCGAAAGCATCATCATCTTGTCCAGAACCTGCAAAAATGCAGTACATCAGGCAATTAAACCAATCTGCTTCTCAGGGTGGAGGTTTGTCAAATGAAGGTGGATCAGGAAATTACACCAAAACTCAAGCGGGGCCATCTCAGACACCTCAACAAAGAAATGGTTTCACCAAACAACAGCTTCATGTTCTTAAGGCACAAATACTAGCATTTCGGCGTCTGAAGAAAGGAGAAGGTGCACTTCCCCAAGAACTTCTTCGGTCCATCAATCCACCACCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGGAGGAGCACAAAATCAAGAGAGATCTGCTGGAAATATTGTGGCTGAACAGCCAAGGCAGAATGAGGCCAATGCCAAAGATTCACAGCATATGCCATCCATTAGTGGAAAGATCTCTTCAAAGAAGGAAGCCTTTATGAGAGATGAGAGCAATCCTGTAACAGCAGTTCATATGCAGGCCACGTCTCCTGTGATAAAGGAATCTGCTGGAAGGGAAGAGCAGCAGTCTGTTGTATGCTCTGCTAAGTCTGATCAGGAAAATCAACATGGAATTAACAGAACGTCTGTTAGAAACGAGTTAGTATTAGACAAGGGAAAAGCTGTTGCTACTCCCCAGTCTTCCGTAGCTGATACAGTGCAACCTAATAAACCTTCTCAGGCGAGCACTGTTGCCCAAGCAAAGGATATGGCTTCCACCGGAAAATACCATGGACCCCTATTTGATTTTCCTTTCTTCACCAGGAAACATGATTCCTTTGGGTCATCAATGATGCTCAACAACAACAACAATTTGTCTCTGGCATATGATGTGAAAGAACTTCTGTTTGAGGAAGGCATGGAGGTCATTACCAAGAGAAAGACAGAGAATTTGAGGAAGATTGAAGGTTTGCTTGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTAAAGTTGCAAATTGAAGGAAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGTTTAAGGGACGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGGAAGTTTGTTAGACTGTGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTTCAGGCATCTCAGAGAGCTTTAAGGGAGAAGCAACTGAAATCTATATTTCAGTGGCGCAAGAAGCTTCTTGAAACACATTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGGGGAGTGGCTAAATATCATGAAAGGATGTTAAAAGAGTTCTCAAAACGTAAGGATGATGACAGAAATAAAAGGATGGAAGCCTTGAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAACATCCAAGGGGATGCTGCGGAGAGATATGCTGTCCTCTCAACTTTTTTAACCCAGACTGAAGAGTATCTCCATAAATTAGGAAAAGTCAGAGCCGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAACGCCCCTAAGGACAGTTCCTCTGTCAACAAGTATTACAGCCTTGCTCATGCAGTGAGTGAGAAGGTTGTACGTCAACCATCAATGTTGCGTGCTGGAACACTTAGAGACTATCAGTTGGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTAATTGCCTATTTGATGGAGTTTAAAGGAAATTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGACAAAGTTATATTCACAAGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGATCGGTCGAGGCTTTCAAAAATTGACTGGAAGTATATAATAATCGATGAAGCACAGAGAATGAAGGATAGGGAATCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAAGAACTGTGGTCGCTTTTAAATTTACTTCTTCCAGAGGTTTTTGACAACAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGGTTCCACTCAAAATACAGAAGATGACTGGCTTGAGACTGAAAAAAAAGTTATCATTATCCATCGACTTCATCAAATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAAGTTGAGGGTTCACTACCACCAAAGGTCTCTATAGTTTTACGGTGTAAGATGTCAGCTGTGCAGAGTGCCATTTATGACTGGGTCAAATCAACGGGTACCCTTCGACTTGATCCCGAGGGTGAGGAATCTAAGATTCAAAAGAATCCACTCTACCAGGCAAAAGAGTACAAGACTTTAAATAACAGATGCATGGAGTTGCGGAAAACTTGTAATCATCCATGTCTTAATTACCCATTATTTAATGACTTATCTACAAATTTAATTGTAAAATCTTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTCAGTACCATGACAAAACTTCTAGACATATTGGAAGATTACTTGAATCTGCGAAGGTTTGTGTATAGAAGAATTGATGGGACTACTAATTTGGATGACCGTGAATCAGCTATAATGGACTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCTAACCCGAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAGAGTTATCTACATGGAGGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTCGATATGGAGGATGAATTTGTGGGTAAGGATCGCTATATAGGATCAGTTGAGAGCCTCATAAGGAACAATATTCAACAATACAAGATAGATATGGCCGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCACAATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCCAGGAGTGATGAGGAAGTGGAGTTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGAGATGATGCAACATGATGAGGTGCCTCAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTTCTTTGTCTAAAAGACCATCAAAGAACATTTTATTGGGTGGTAGTGTTGGCGTGGACAGTGAGGTGGGCTCAGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAATATTCTGAAGCAAGCTCTGAAGACAGAAATGAGTATTCTGCACAAGAAGAAGGGGAAATTGGAGAGTTTGAAGATGATGTTTATAGTGGGGCTGATGGGCATCAATTGGAAGAGGATGGTTTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGGCATAATCATGTGGCTGAAGAGGCTGGTTCCTCAGGATCATCCTCTGACAATCAAAGATTGGTGCAAACAGTTTCACCTTCAGTTTCTGCTCAGAAATTTGGTTCTCTCTCCGCATTGGATGCCAGGCCAAGCTCCATTTCAAAAATTATGGGAGACGACTTGGAAGAAGGGGAAATTGCAGTATCAGGTGATTCGCACATTGATCATCAACAATCAGGAAGTTGGATTCATGAACGAGATGAGGGGGAAGATGAACAAGTTTTGCAGAAACCCAAGATTAAGCGCAAGCGTAGTCTTCGTGTTCGTCCCCGCCAAGCTGTGGAAAGGCTTGAGGACAAGTCTGGCAGTGAGATGAAATCTCTTCAACGGGGAGAATCATCTCTTTTGGCAGACTATAAATATCAAATGCAAACAAGGATTGATACGGAATCAAAATCATTTGTAGACAACAATGCCGGCAAGCATGATAAGAATGCAACATCATTAAAAAACAAGCAAAAGTTACCTTCAAGGAAAGCAGCTAATACATCCAAATTACATGGGTCACCTCAGTCTAATCGTTTGAATTGCTCATCTGGTCCTTCTGATGATGGTGAACACCCTAGAGAAAGTTGGGAGGGGAAGCCTCTAAATTCAAATGGATCTTCAGTTCATGGCACTAGGACGACTGAGATAATCCAAAGAGGATGCAAGAATGTAATTAGCAAGCTCCAAAGGAAAATAGACAAGGAAGGCCATCAGATTGTACCTTTGCTAACAGATTTATGGAAGAGGATTGAGAATTCTGGGTATGCGGGTGGATCTGGGAGTAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTACACCGGAGTAATGGAGCTCGTGTTTGATGTACAGTTTATGTTGAGGGGTTCAATGCATTTCTACGGATATTCATATGAGGTGAGATCTGAAGCAAGGAAGGTTCATGATCTATTCTTTGATATCCTGAAAATTGCGTTCCCAAATACAGATTTTGGAGAAGCAAGAAGTGCAATTTCTTTCTCCAGCCAAATTCCTGCCGGTACCACCGCATCTCCAAGGCAAGTGACAGTTGGCCCCAGCAAAAGGCACAGAGCGACCAATGATGTGGAAACCGATCCAATCCCTTCACAGAAGTTGGCAGCTTCTAATGGCGAAAGCAGCAGGTTCAAAGGTCATTTGAAGGAGTCAAAAACTGGAAGTGGCAGCAGCAGTGCACGTGAGCAACCTCAGCAGGATAATCCTCCAATGCTCACTCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGAGAAAAGACATTGGGGAAGGGAAGGAGTGGATCAGCATGTCCTGTTTCTCCACCTTGTGCTATAAGAAGTCCAGGATCAGGTTCAACCCCAAAGGATGGTAGATGGGGTAGTCAACCATCTCAACACTCAAATGGGTCTGCTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG
Protein Sequence
- >LR48_Vigan03g047900
MQLPQQSRKFVDLAQHGSNQGQGVEQQMLNPAQAAYFQYALQASQQKSALAMQQPKMGMLGSSSVKDQDMRMGNLKMQELMSMQAVNHAQASSSRNSSDHFNHGEKRVEQGQQLAPARKSEGNPSSQGPAVGNIVPGNIIRPVQALANQQNISNTMNNQIAMSAQLRAVQAWAHEQNIDMSHPANAQLMAQLIPLMQSRMVQQPKVNDTNSGAQSSPVPVSNQQVTSPAVASESSARANSSGDVSAQSGSGKGRQMAPPNHLSPPISAGIASTSSDMTVQQFSLHSRDTQGSLKQSVLTGNGMHPQQTSANMNIGADHPLNAKASSSCPEPAKMQYIRQLNQSASQGGGLSNEGGSGNYTKTQAGPSQTPQQRNGFTKQQLHVLKAQILAFRRLKKGEGALPQELLRSINPPPLDLQVQQPIHSGGAQNQERSAGNIVAEQPRQNEANAKDSQHMPSISGKISSKKEAFMRDESNPVTAVHMQATSPVIKESAGREEQQSVVCSAKSDQENQHGINRTSVRNELVLDKGKAVATPQSSVADTVQPNKPSQASTVAQAKDMASTGKYHGPLFDFPFFTRKHDSFGSSMMLNNNNNLSLAYDVKELLFEEGMEVITKRKTENLRKIEGLLAVNLERKRIRPDLVLKLQIEGKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLKEFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTNIQGDAAERYAVLSTFLTQTEEYLHKLGKVRAAAACAGEEVMIRNRFMEMNAPKDSSSVNKYYSLAHAVSEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRTKLYSQEIMAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGSTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGEESKIQKNPLYQAKEYKTLNNRCMELRKTCNHPCLNYPLFNDLSTNLIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLNLRRFVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDEFVGKDRYIGSVESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQEVNRMIARSDEEVELFDQMDEELDWPEEMMQHDEVPQWLRANTREVNAAIASLSKRPSKNILLGGSVGVDSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNEYSAQEEGEIGEFEDDVYSGADGHQLEEDGLTSDAGYEIARSSENARHNHVAEEAGSSGSSSDNQRLVQTVSPSVSAQKFGSLSALDARPSSISKIMGDDLEEGEIAVSGDSHIDHQQSGSWIHERDEGEDEQVLQKPKIKRKRSLRVRPRQAVERLEDKSGSEMKSLQRGESSLLADYKYQMQTRIDTESKSFVDNNAGKHDKNATSLKNKQKLPSRKAANTSKLHGSPQSNRLNCSSGPSDDGEHPRESWEGKPLNSNGSSVHGTRTTEIIQRGCKNVISKLQRKIDKEGHQIVPLLTDLWKRIENSGYAGGSGSSLLDLRKIDQRIDRMDYTGVMELVFDVQFMLRGSMHFYGYSYEVRSEARKVHDLFFDILKIAFPNTDFGEARSAISFSSQIPAGTTASPRQVTVGPSKRHRATNDVETDPIPSQKLAASNGESSRFKGHLKESKTGSGSSSAREQPQQDNPPMLTHPGQLVVCKKKRNDREKTLGKGRSGSACPVSPPCAIRSPGSGSTPKDGRWGSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM