Information report for LR48_Vigan02g041400
Gene Details
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Functional Annotation
- Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
Homologous
- Citrullus lanatus: Cla97C08G150500
- Cucumis sativus: CsGy6G020910
- Glycine max: Glyma.02G159100
- Gossypium hirsutum: Gohir.D06G175700, Gohir.A05G293100, Gohir.A06G168200
- Juglans regia: Jr12_21780, Jr07_34260, Jr07_34250, Jr07_34270, Jr07_34280
- Medicago truncatula: Medtr1g050535
- Populus trichocarpa: POPTR_008G035200v3, POPTR_010G227200v3
- Prunus avium: Pav_sc0001183.1_g600.1.mk
- Prunus persica: PRUPE_2G208600
- Rosa chinensis: RchiOBHm_Chr1g0362561
- Vitis vinifera: VIT_13s0019g04820
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A0L9TVQ1
- EMBL: CM003372 , JABFOF010000003
- AlphaFoldDB: A0A0L9TVQ1
- KEGG: var:108326228
- OMA: IRNHLLC
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF260
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A0L9TVQ1
- STRING: 3914.A0A0L9TVQ1
Sequences
CDS Sequence
- >LR48_Vigan02g041400
ATGGATCTCCCACCTCAATTTTCCTCCACCCTAAACCCTAACCCTCACCCAAGTCCCAACGTTTTCTTGGACCCAACCACCGATTCAATCCCAAATCTCCTCCAGAACCCCAACTCCACCACCTTGAGCCACTACCTCTCTTTCTCCGTCCCCAAGAAGCGCCGTCGCGGCCGCTCTCAGCGCAATCCAGCTTCGTTTCGCCTTCCTCTCACCCTGCCCACCGACTCTCCGTCTTCCTCTTCCTCCCGAGCCCCCGCCTCCGACGAAATTATCGTAATAAACAAAGAACCCAAAACCGAAGCGCTAATCGCCCTCAGCGCCGGTTTTCCGGCGGACTCCCTGACGGAGGAGGAGATCGACGCTGCCGTGCTGCCGGTCATCGGCGGCATCGAGCAGGTAAACTACACTCTCATTCGGAACCACATCATTGCAAAATGGCGCGAAAACGTGTCCAATTGGGTGAGTAAGAAAACCTTCCTGGATTACATTCCGCAACATTACCACGCGCTTTTGGACTCCGCATATAATTACCTTGTCTCGCATGGTTACATCAATTTCGGAGTGGCCTCTCCCATCAAGGAGAAGATTCCGTCGGAGGCGAGCAAGCCGTCGGTGATTATCGTCGGCGCCGGGCTCGCCGGGCTGGCTGCGGCTCGGCAGCTTATGCGGTTTGGGTTCAAGGTGACGGTGTTGGAAGGGCGGAAGCGCGCCGGTGGTCGTGTTTATACGAAGAAGATGGAGGGAGGGAATAGGCTGTGTGCTGCTGCAGATTTGGGTGGTAGTGTGCTGACGGGTACGTTGGGGAATCCCCTTGGGATTGTGGGGAGGCAGTTGGGTGAGTTGCTTCATAAGGTGAGGGATAAGTGTCCCCTTTATTGCGTGGACGGGAGGCCGGTTGATCCGGACACGGATGTGAAGGTGGAGTCTGCGTTTAATCGTATGCTCGACAAAGCGAGTAGGTTGAGGCAGTTGATGGGGGAGGTCTCGGTGGATGTGTCTCTTGGAGCGGCACTCGAGACGTTTCAGCAAGTGTTTAAGGACTCGGTGAGTGATGAGGAGTTGAGTTTGTTCAATTGGCATCTTGCTAATTTGGAGTATGCGAATGCGGGGTTGTTGTCAAATCTTTCCCTTGCATTTTGGGACCAGGATGATCCTTATGATATGGGGGGAGATCATTGTTTTTTGCCTGGGGGAAATGGGAAGCTGGTTCAGGCTTTGGCAGAGAATGTGCCAATTTTGTATGAGAAAACTGTGCATACGATTAGGTACAGTGGTGATGGAGTGCAGGTGATTGCAGGGAATCAGGTGTTTGAGGGTGATATGGCTTTGTGCACTGTTCCATTAGGTGTATTGAAGAAAGGATCTATCAAGTTTATACCAGAGTTGCCTCAGAGGAAGCTTGATGGGATAAAAAGGTTGGGGTTTGGTCTGCTGAATAAGGTTGCCATGCTTTTTCCTCATGTGTTTTGGGAGCTGGATCTTGACACATTTGGACATCTTTCTGATGATCCAAGTCGTCGTGGGGAATTTTTTTTGTTTTACAGTTATGCAACAGTTGCTGGTGGTCCCCTGTTGATTGCTTTAGTGGCAGGGGAAGCTGCTCATAAGTTTGAGAGCATGCCCCCCACAGATGCAGTCACACGGGTTCTTCAAATTCTCAAGGGTATATATGAACCAAAAGGAATCAATGTTCCTGAGCCAATCCAAACTGTCTGTACTAGATGGGGTAGTGATCCCTTCTGCTTTGGTTCTTACTCCAATGTTGCAGTTGGAGCTTCTGGTGATGACTACGATATTTTAGCAGAAAGTGTAGGAGATGGTAGGCTTTTCTTTGCTGGGGAAGCAACCACTAGACGCTATCCTGCTACTATGCACGGGGCTTTCCTAAGTGGTCTAAGAGAAGCTGCAAATATGGCCCACCATGCTAATATTCGAACACTGAAGGTGAAAATTGACAAGGCCCCTTCAAATGCTCATTCTTGTGCTTCTGTTCTTGCAGATTTATTTAGAGAACCTGATATAGAATTTGGGAGCTTTTCTATCATTTTTGCTCATAAGAATACGGACCCCAAGTCACCAGCAATCTTGAGGGTAACATTTAGTGAGGCTAGAAAGAAATGTAATGAAGTTGCAAAACAAGACCAACAACACTCTAATAAATTACTTTTTCAGCAGCTTCAGTCACATTTTAATCAACAACAACAGCTTCATGTTTACACATTACTGACAAGACAACAGGTTCTTGACCTAAGAGAGGTAAGAGGTGGTGATGAAATGAGATTGAATTACCTCTGTGAAAAGCTAGGAGTTAAACTAGTCGGAAGAAAAGGATTGGGGGTGAATGCTGATTCAGTCATTGATTTCATTAAAAGTGAGAGGGGCAATCGTAAGCCTGTTTCAACCTCTTTGGCTCTTAAACCAGGGGTGTCATCAAAGCTGAAGGCAGGCATTATGAAGCGCAAGTTAATCAGACGGGCAAAAGTGGTGAGGAAAAGCAATGGATCCATAGATGTGGGGAGTGCCAACAAATTATCAGAAGAGGTTAAGATGACAGATCTAGTGCTTCCTGATTTAACTCTTTCAGGGACCAATCAAAGTGACTTGAGCAATCCATAA
Protein Sequence
- >LR48_Vigan02g041400
MDLPPQFSSTLNPNPHPSPNVFLDPTTDSIPNLLQNPNSTTLSHYLSFSVPKKRRRGRSQRNPASFRLPLTLPTDSPSSSSSRAPASDEIIVINKEPKTEALIALSAGFPADSLTEEEIDAAVLPVIGGIEQVNYTLIRNHIIAKWRENVSNWVSKKTFLDYIPQHYHALLDSAYNYLVSHGYINFGVASPIKEKIPSEASKPSVIIVGAGLAGLAAARQLMRFGFKVTVLEGRKRAGGRVYTKKMEGGNRLCAAADLGGSVLTGTLGNPLGIVGRQLGELLHKVRDKCPLYCVDGRPVDPDTDVKVESAFNRMLDKASRLRQLMGEVSVDVSLGAALETFQQVFKDSVSDEELSLFNWHLANLEYANAGLLSNLSLAFWDQDDPYDMGGDHCFLPGGNGKLVQALAENVPILYEKTVHTIRYSGDGVQVIAGNQVFEGDMALCTVPLGVLKKGSIKFIPELPQRKLDGIKRLGFGLLNKVAMLFPHVFWELDLDTFGHLSDDPSRRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTRVLQILKGIYEPKGINVPEPIQTVCTRWGSDPFCFGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLSGLREAANMAHHANIRTLKVKIDKAPSNAHSCASVLADLFREPDIEFGSFSIIFAHKNTDPKSPAILRVTFSEARKKCNEVAKQDQQHSNKLLFQQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNYLCEKLGVKLVGRKGLGVNADSVIDFIKSERGNRKPVSTSLALKPGVSSKLKAGIMKRKLIRRAKVVRKSNGSIDVGSANKLSEEVKMTDLVLPDLTLSGTNQSDLSNP