Information report for LR48_Vigan01g228100
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Cicer arietinum: XP_004515844.1, XP_004501832.1
- Glycine max: Glyma.04G191900.1.p, Glyma.04G191900, Glyma.04G192000.3.p, Glyma.04G192000.1.p, Glyma.04G192000, Glyma.06G174000.2.p, Glyma.06G174000.1.p, Glyma.06G174000, Glyma.06G173800.1.p, Glyma.06G173800, Glyma.04G192000.2.p
- Lotus japonicus: Lj4g3v1389260.1, Lj0g3v0351959.1
- Medicago truncatula: Medtr3g075210.1, Medtr3g075210
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A0L9TQ90
- EMBL: CM003371
- OMA: AENDATC
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- STRING: 3914.A0A0L9TQ90
Sequences
CDS Sequence
- >LR48_Vigan01g228100
ATGGCAGCTTCCGAGGAAGTACTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGCCCAACCGAGGCGGAGTTTCAAAACCCGATCGCCTATATCTTTAAAATTGAGAAAGAAGCCTCTCAGTACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCTCCTAAGAAAACAGCAACTGCCAACCTCACGCGCTCCCAGCCCACCTTTACCACGCGTCAACAGCAGATCGGTTTCTGCCCCCGACGTGTGCAGCCAGTGCGCCGCCGCGTATGGTACAGCGGTCATCACTACTCTCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAGCAAACCCAAACCCTCCCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACTTTAGACAAACCCTTCTCTGTCGAATACGCTAACGACATCCCTGGCTCCGCGTTTAGTCCCCTCCGTGCTTTGCGCGATGTCGATCACGTTGGTGACACCCCATGGAATATGAGGACGGTTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCCATGTTGTTCAGCTGGTTCGCGTGGCATGTGGAGGATCACGACTTGCATAGCTTGAATTACCTCCATTTCGGCGCTCCCAAGACTTGGTATGGCGTGCCTAAGGATGCTGCCGTCGCATTCGAGGAGGTTGTCAGAGTTCATGGCTACGGTGGCGAGATCAATCCTCTTGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCACCGGAGGTTTTTGTTGGTGCGGGTGTTCCCTGCTGCAGGCTGGTTCAAAATGCTGGGGAATTTATAGTGACGTTTCCAAGAGCTTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAAGCGGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGAAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTGTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGGAGTTCTCGGCTTAAATATAAGAGAAATGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGATCTGATATAGTACTTCTCCCTCGTAGCTCTTCTGATTTTTCTGTTTGCTCAAAATTACGCGTTGGGTCACGACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTACGAGGGAATGGATTCCTCAGATTTTATTTCTAATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAAAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTCTGCCATTAAGTTCAAATGGGAACATATACACTTCAAGTTCAAAAACACTGCAACGAGACAGTGAAAAGGAAACAGATCAAGGAGATGGATTGTCAGATCATAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTGCAGCCCAGAGAACCAGCAGCTACGTACCTTATGTCGGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAATTGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGCAGGTTCTATTTATTAATGAATACACATCCTTGGGTTTTTCACTACGGATGGAGTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCATTCAATCTGTTAAGCACCATGCACAGATTGCTGATCAAAATTATGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCGGGGGGGATTAGATATTGCACTTGATGATGATGAATTGAATGCAGTAAACCATTCAACCTCTAATGGATCTCAGGAGATGTCTAGTATGCCTTCTCATTTTCAAGATCCCCATACTAGTCCCATGGTTAGAGTCATTAGACTTAATAAAGGAGATGATATTCATTCAAGAAGAAAAGACAATTATGAGTATTATATGCATAAGAGACTTGAGCAAATTATGACTCCTTTTGACTATTCTGTTAAGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTTTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGTCCAATCGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGGTTATACGTGGAAGAATACTGTATACAGGCAGGCCAACAGGGAAGATGAAGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGATTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGGAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCATCAAGCAGAAAAAGCTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCTCTTTTAGCCAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGAAAGCAACCACAAAAGCAATACCTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTTGAGAGAGGTTGGCTTTCAGATAACTCCATTGAAGATAAATCCAATAAATATCAAAGGAGGATTATTGGGGGTAAGCGCTCCAGGCATATTGAGAGAGATGATACTGCTTCGGAAGGGGATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACCAAGCATTCAGAATCTAGTGAAGATGATGCAATGTCTGATGATTTTCTGGATGATGATTCTTGTATACAGCATCGGGGGAGGGCTAACACCAACAAAGCTAAATTAATTGACAGTGATGTGTTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCGGAGGGGGGAGCTTAGCAATGAGCAAGATGCTATTTCAGACGATTCATTGAGTGCTGGTTCTCTTCAGCTGCACGGAAAGACTCCCAAAGGCAAGTATGATAAATACATTACTGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTGTTTATGGAAGCAGAGAGGGAAGATATCTAAAGGCAGACAAAGATCACTTTCTGCTAAAAATGAAGATGGTCTGAAGCACCATAGGCAGAAGCAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACTTTGCAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGGTTTTTCAAGTGTCAAAGAAGGATTCCTAAAAACAAGCAAGTGAAGTTAATCGAGGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATGACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATGGATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAAAGGAAGCAAGTTAAAGGTATGGACGAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCAGCACAAAAGAACTCTTCAAAGTAAGCAGTCTAAAGCACAGATTCTTCAACAAACGAAACAAACTAATCCACGCCATGCAAGAAACAAGACATCCCATCCTGCCAAACAGAAACAAGGTGTTCATACGCAAATGAAATCAAAGGCTGCTCGGCAGACAAAGAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGACCTCGCACGCGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCAGAAGGAAAATTGAAAGAAAAGAGAACCAAAAGGGAAAAGGAGAAGAATACAACTGCTGCAAAGGTTTTAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATCGAGGGATGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACACAAGAGAAATATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAAAAGAATTGTTGA
Protein Sequence
- >LR48_Vigan01g228100
MAASEEVLPWLKSLPVAPEYRPTEAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTATANLTRSQPTFTTRQQQIGFCPRRVQPVRRRVWYSGHHYSLREFEAKAKAFHKTYLKKSKPKPSPLELETLYWKATLDKPFSVEYANDIPGSAFSPLRALRDVDHVGDTPWNMRTVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFIVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSDIVLLPRSSSDFSVCSKLRVGSRQLKVNPDFSLNVYNYEGMDSSDFISNDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPLSSNGNIYTSSSKTLQRDSEKETDQGDGLSDHRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSIAHEDASIPKPRTYTGRFYLLMNTHPWVFHYGWSKQNAQHDSNGVPIQSVKHHAQIADQNYEEALNSGREKGNTALALLASAYGNSSDSEEDRGGLDIALDDDELNAVNHSTSNGSQEMSSMPSHFQDPHTSPMVRVIRLNKGDDIHSRRKDNYEYYMHKRLEQIMTPFDYSVKSEDHDNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYTWKNTVYRQANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQSSPGSSPTEPKVYQRRTIKQKKLVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIERSESNHKSNTSTRKSGKKWKKSVEKGGIWEESFVERGWLSDNSIEDKSNKYQRRIIGGKRSRHIERDDTASEGDYSPLPLHRKPITKHSESSEDDAMSDDFLDDDSCIQHRGRANTNKAKLIDSDVFSDDTMDYGSDWLRRGELSNEQDAISDDSLSAGSLQLHGKTPKGKYDKYITEEDVISDDQREVCLWKQRGKISKGRQRSLSAKNEDGLKHHRQKQQQRNLRSRQDKHFAVENITSDDQMEGRFFKCQRRIPKNKQVKLIEEEDVMSDDQLKDDFQKPQRSTRRSRQNKYNDKDVMDDLAENNFHILYRTRKRKQVKGMDEDNIDSDDQMDDILHQQHKRTLQSKQSKAQILQQTKQTNPRHARNKTSHPAKQKQGVHTQMKSKAARQTKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGKLKEKRTKREKEKNTTAAKVLVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC