Information report for Jr16_02560
Gene Details
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Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Arabidopsis thaliana — AT1G15750
Gene Resources
- Pfam: PF00400
- UniProt: A0A833SIC7
- EMBL: LIHL02000016
- KEGG: jre:109012475
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR011044 , IPR011047 , IPR015943 , IPR027728 , IPR036322 , IPR048419 , IPR054080 , IPR054532 , IPR056154
- PANTHER: PTHR44083 , PTHR44083:SF5
- SUPFAM: SSF50969 , SSF50978 , SSF50998
- PROSITE: PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
- STRING: 51240.A0A2I4H0M1
Sequences
CDS Sequence
- >Jr16_02560
ATGTCTTCCTTAAGTAGGGAGTTGGTGTTTTTGATTTTGCAGTTCTTGGATGAGGAGAAATTCAAGGAAACAGTTCACAAGTTAGAACAAGAGTCTGGCTTTTTCTTCAACATGAAGCATTTCGAGGATCAGGTCCAGGCGGGTGAATGGGATGAAGTTGAGCGCTATTTATGTGGCTTCACAAAGGTAGAGGACAACCGATATTCAATGAAGATTTTCTTTGAGATTAGGAAGCAGAAGTACTTGGAAGCTCTTGATAGGCAGGATCGAGCAAAGGCTGTTGAGATTCTTGTGAAAGACCTTAAGGTTTTCGCATCCTTTAATGAGGAACTTTTCAAGGAGATCACTCATTTGCTTACTCTCGAAAACTTTAGGCAAAATGAGCAGCTTTCCAAGTATGGAGATACAAAATCGGCTAGAAACATCATGCTTATAGAACTCAAAAAGCTAATTGAGGCAAACCCACTGTTTCGTGATAAGCTTGTGCTTCCATCCTTCAAAAGTTCGCGACTAAGGACCTTAATTAACCAGAGTCTAAACTGGCAGCATCAACTTTGCAAGAATCCTCGTCCAAATCCTGATATTAAAACACTCTTCATGGATCATTCTTGCACTCCAACGACTAATGGAGCTCGTCCTCCTCCTACAAACAGCCCCCTTATGGGGCCAATTCCTAAGGCTGGGGCATTTCCACCTATTGGTGCCCATGGTCCTTTTCAGCCTGTTGTTTCACATTCTCCTGGTGCTATTGCTGGGTGGATGTCAGGCACCAATCCTTCTTTACCTCATGCTGCGGTGGCAGCTGGCTCACCTGGTCTAGTGCAGCCTTCTAGTGCAGCTGCATTCTTGAAACACCCAAGGACTCCCACTGGTGTAACAGGCCTAGATTATCAATCTGCTGATTCGGAGCACTTGAAGCGAATTCGCATTGGCCAGTCTGATGAGGTGTCCTTTTCTGGTGTAATGCATACTCCTAACATCTGTTCACAAGATGACCTTCCTAAAGCTGTTATGCGTACCCTCAGTCAAGGATCTAATGTCATGAGCATGGACTTTCATCCACAGCAACAAACAATTCTTCTAGTTGGGACAAATGTTGGTGACATTAGTGTATGGGAAGTTGGGTCCCGGGAAAGGTTGGCACATAAGCCTTTCAAGGTTTGGGATCTCTCAGCTGCTTCTATGCCATTGCAGACAGCTTTACTCAATGATGCTGCGATATCGGTGAATAGATGTGTTTGGGGGCCAGATGGACTTATGCTTGGCGTTGCATTTTCAAAACATATTGTTCAAATATATATGTACAATCCAACTGGAGAACTGAGACAGCATTTGGAGATTGATGCTCATGTTGGTGGTGTTAATGATATTGCGTTTGCTCATCCCAACAAGCAACTGTGTATTGTCACATGCGGCGATGATAAAATGATTAAGGTATGGGATGCTGTAACTGGACGGAGACAGTACACTTTTGAAGGCCATGAAGCTCCTGTATATTCTGTCTGTCCTCACTACAAAGAAAATATCCAATTTATTTTCTCTACTGCCATTGATGGGAAAATCAAAGCTTGGCTGTATGATTGCTCGAGATCTAGAGTGGATTATGATGCACCTGGACTTTGGTGTACCATGATGGCATATAGTGCGGATGGAACCAGGCTCTTCTCATGTGGAACAAGTAAAGAAGGCGAGTCTCATCTAGTTGAGTGGAATGAGAGTGAAGGGGCAATAAAACGGACATATTCTGGTTTTAGAAACCGCTCCTTAGGTGTTGTCCAGTTTGACACAACCAGGAACAGGTTCTTGGCTGCTGGTGATGACTTTCAAATCAAGTTCTGGGATATGGATAATACAAATATGTTGATAGCTGTTGATGCAGATGGTGGATTGCCTGCTAGTTCTAGACTGAGATTCAACAAAGAGGGGTCGTTGTTGGCAGTCACTACTAGTGACAATGGTATCAAGGTTTTAGCCAACAAGGATGGTGTGCGCTTGATAAGGATGTTGGAGAGCAGGGCCACCGATAAAAGTCGAGGCCCTTCTGAACCCATTAACTCTAAGCCTCTGCTTGGTAACTCCTTAGGCCCATTTGCAAATGTTTCTCCTGCTGCTGCTCCAACACTGGAACGTCCTGATAGAACTCCTGCTGTATCTGTCAGTAGTCTTGGGGACAGTAGCAGGCTTCTGGATGTCAAACCACGGATCTCAGATGATGCAGACAAGATTTTGAGCTGGAAAGTATCTGATATTGTGGAAAAATCTCAACTCAAGGTTCTACGATTGCCCGACTCCATCACAGCAGGGAAGGTTGTACGACTGATCTACACTAACAGTGGCCTAGCTCTACTGGCCCTTGCTTCCAATGCTGTTCATAAACTTTGGAAATGGCAACGTAGTGAAAGGAATCCAGTGGGAAAGGCTACCGCGCATGTAGTACCACAGTTGTGGCAGCCCCCCAATGGAACTCTTATGAGTAATGATGTAAATGACAGCAAACCAGCTGAAGAGTGTGCTGCATGTATTGCTCTATCTAAAAACGATTCTTATGTCATGTCTGCATCAGGTGGGAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCATGACAACATTTATGTCCCCACCTCCTGCAGCGACTTTTCTGGCATTCCACCCACAAGATAATAACATTATTGCTGTTGGAATGGAAGATTCTTCTATTCAAATCTATAATGTCAGGGTTGATGAGGTCAAAACCAAGCTTAAGGGTCACCAGAATCGGATTACAGGGCTTGCATTTTCCCAAACCTTAAATGCTTTGGTTTCTTCAGGAGCTGACACACAGTTATGTGTCTGGAGCATTGATGGGTGGGAGAAGAAGAAATCAAGGTTCATTCAAGCACCAGCTGGTCGTCAATCTCCACTGGTTGGAGAAACTAAAGTTCAGTTCCATAATGATCAGGCACATCTGTTAGTTGTACACGAAAGTCAAATCTCCATCTACGACAGCAAGCTCGAATGTCTGCACTCATGGTCTTGGTCTGCGAAAGACACAAATACAGCTCCCATCTCAAATGCAATATATTCATGTGATGGTCTACTGGTTTATGCTTCATTTTATGATGGTGCTGTTGGAGTTTTTGATGCGGATAGCTTAAAGATCAGGTGCCGAATAGTACCTTCTGCTTACATACCATTCTCTGCTGCCAGCACCAACCCAGTCTATCCTTTGGTCATAGCTGCTCATCCATCTGAGCCTAACCAGATTGCACTAGGCATGAGCGATGGAACCGTACATGTGGTGGAGCCATTAGACGTAGAGCAGAAGTGGGGTGTCCAATCCTGTCAAGATAACGGGTCAATACCTTCTAATTCATCGAATCCTTCCCCAAGTGGTCAAGCATCCGAACTTACTCCTAGGTGA
Protein Sequence
- >Jr16_02560
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITHLLTLENFRQNEQLSKYGDTKSARNIMLIELKKLIEANPLFRDKLVLPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFMDHSCTPTTNGARPPPTNSPLMGPIPKAGAFPPIGAHGPFQPVVSHSPGAIAGWMSGTNPSLPHAAVAAGSPGLVQPSSAAAFLKHPRTPTGVTGLDYQSADSEHLKRIRIGQSDEVSFSGVMHTPNICSQDDLPKAVMRTLSQGSNVMSMDFHPQQQTILLVGTNVGDISVWEVGSRERLAHKPFKVWDLSAASMPLQTALLNDAAISVNRCVWGPDGLMLGVAFSKHIVQIYMYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDAVTGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCSRSRVDYDAPGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRNRSLGVVQFDTTRNRFLAAGDDFQIKFWDMDNTNMLIAVDADGGLPASSRLRFNKEGSLLAVTTSDNGIKVLANKDGVRLIRMLESRATDKSRGPSEPINSKPLLGNSLGPFANVSPAAAPTLERPDRTPAVSVSSLGDSSRLLDVKPRISDDADKILSWKVSDIVEKSQLKVLRLPDSITAGKVVRLIYTNSGLALLALASNAVHKLWKWQRSERNPVGKATAHVVPQLWQPPNGTLMSNDVNDSKPAEECAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAVGMEDSSIQIYNVRVDEVKTKLKGHQNRITGLAFSQTLNALVSSGADTQLCVWSIDGWEKKKSRFIQAPAGRQSPLVGETKVQFHNDQAHLLVVHESQISIYDSKLECLHSWSWSAKDTNTAPISNAIYSCDGLLVYASFYDGAVGVFDADSLKIRCRIVPSAYIPFSAASTNPVYPLVIAAHPSEPNQIALGMSDGTVHVVEPLDVEQKWGVQSCQDNGSIPSNSSNPSPSGQASELTPR