Information report for Jr12_20250
Gene Details
|
|
Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Actinidia chinensis: CEY00_Acc22153
- Beta vulgaris: BVRB_9g219140
- Citrullus lanatus: Cla97C07G139070
- Cucumis melo: MELO3C017848
- Cucumis sativus: CsGy4G001800
- Daucus carota: DCAR_025528
- Glycine max: Glyma.08G214600, Glyma.07G028000
- Gossypium hirsutum: Gohir.D05G122800, Gohir.A05G121900
- Manihot esculenta: MANES_04G108600
- Medicago truncatula: Medtr4g009840
- Nicotiana attenuata: A4A49_33343
- Prunus persica: PRUPE_3G093100
- Rosa chinensis: RchiOBHm_Chr2g0134371
- Sesamum indicum: SIN_1021914
- Solanum lycopersicum: Solyc03g117360.3
- Vitis vinifera: VIT_09s0002g08370
Gene Resources
- Pfam: PF00400
- UniProt: A0A833TWB9
- EMBL: LIHL02000012
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR011047 , IPR015943 , IPR019775 , IPR027728 , IPR036322 , IPR048419 , IPR054080 , IPR054532
- PANTHER: PTHR44083 , PTHR44083:SF45
- SUPFAM: SSF50978 , SSF50998
- PROSITE: PS00678 , PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
Sequences
CDS Sequence
- >Jr12_20250
ATGTCGTCGCTTAGTAGAGAGCTTGTGTTCTTGATCTTACAGTTTCTTGACGAGGAGAAGTTCAAAGAGACCGTTCACAAGCTTGAACAGGAATCTGGGTTTTTCTTCAATATGAAATACTTTGAGGATGAGGTGCATAATGGGAATTGGGATGAGGTTGAGAAGTACCTATCCGGGTTCACAAAAGTGGATGACAATCGGTATTCAATGAAAATATTTTTTGAGATAAGGAAGCAGAAGTATCTCGAGGCATTGGATAAGCATGATCGTTCCAAGGCTGTGGATATATTAGTTAAAGATTTGAAAGTTTTTGCCACATTTAATGAAGAGCTTTTCAAGGAAATCACCCAGCTCTTGACATTGGAGAATTTTAGGGAAAACGAACAACTTTCCAAATATGGAGATACCAAATCTGCCAGAGCAATCATGTTGGTAGAGCTCAAGAAGCTAATTGAAGCAAATCCTTTATTCCGCGACAAATTGCAATTCCCAAACCTTAAAAATTCACGGTTACGGACTCTCATCAACCAGAGCTTGAATTGGCAGCACCAACTATGTAAAAACCCTCGGCCAAATCCAGATATAAAAACTCTATTTGTGGATCACACTTGTGGACAACCAAATGGTGCACGAGCTCCATCTCCTGCAAACAATCCACTGCTTGGATCCTTACCAAAAGCTGGGGGTTTCCCTAACCTAGGTGCACATGGGCCTTTTCAGCCTACACCAGCACCAGTTCCAACACCACTAGCAGGTTGGATGTCCAATCCTGCCACTGTAAATCATCCGGCAGTTTCGGGAGGGGCTATTGGTCTTGGTGCTCCATCAATCCCTGCTGCTCTGAAGCATCCAAGGACTCCTCCAACCAATCCTACTGTAGAGTACCCATCTGGGGAGTCTGACCATGTTTCTAAAAGAACAAGACCAATGGGAATTTCTGATGAGGTAAATTTGCCTGTCAATGTTTTGCCAGTAACATTTCCTGGTCATAGTCATGGTCAGGCTTTCAATGCACCCGATGACTTGCCGAAGACTGTCTCAAGGACCTTAAATCAAGGATCGTCTCCCATGAGCATGGATTTTCATCCTGGTCAACAGACCATACTTCTTGTTGGTACCAATGTTGGGGACATAGGTTTATGGGAAGTTGGTTCGAGGGAGCGGTTGGTTTTGAAGAACTTCAAAGTTTGGGATATTAGTTCATGTTCAATGCCTCTGCAGGCAGCTTTAGTTAAAGATCCAGGTGTATCTGTTAATCGTGTGATTTGGAGCCCTGACGGTTCTTTATTTGGAGTTGCATACTCCAGGCACATTGTTCAAATATATTCTTATCATGGGAATGATGATGTACGGCAGCACCTGGAGATTGATGCCCACGTTGGTGGAGTAAATGACATAGCATTCTCCCATCCAAATAAGCAGCCTTGTGTGATAACCTGTGGTGATGATAAGAGCATCAAGGTATGGGATGCTGCTACTGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCCGTCTGTCCCCACTATAAGGAAAACATTCAGTTTATCTTTTCAACAGCACTGGATGGAAAGATCAAAGCATGGCTGTACGACAACTTGGGATCTCGAGTTGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCTGATGGTACTAGGCTCTTTTCGTGTGGGACAAGTAAAGATGGGGAATCATTTATTGTTGAATGGAATGAAAGCGAAGGGGCAGTTAAAAGGACCTATCAAGGATTCCGCAAACGTTCTCTGGGTGTTGTGCAATTTGATACAACCAAAAACCGGTTTTTGGCTGCTGGTGATGATTTCTCAATCAAATTCTGGGATATGGACAATGTTCAACTTTTGACAACTGTTGATGCTGATGGAGGCCTCCCAGCAAGCCCACGTATCCGCTTTAACAAGGATGGGACTCTGTTGGCTGTTTCTGCTAATGAGAATGGAATCAAGGTTTTAGCAAATACAGAAGGTATTAGGTTGCTACGCACATTGGAAAATCCTTCTTATGATGCATCGAGAACGTCTGAAGCTGTGGCGAAGCCGACAATAAACCCAATTTCAGCTGCTGCAGCAGCTGCTACTAGTGCTGGACTTGCGGACAGAGGTGTCTCTGTGGTTGCTATTGCTGGAATGAATGGGGATGTCCGGAACTTCGGGGACGTGAAACCTAGAATCACAGAAGAATCCAATGACAAATCCAAGATCTGGAAGCTCACTGAAATCAATGAACCATCTCAATGCCGATCCTTGAGGCTTCCCGAAAACCTGAGAGTAACCAAGATATCAAGGTTAATCTATACGAATTCAGGAAATGCTGTTCTAGCATTAGCATCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGCAGTGATCGTAATTCTTCTGGAAAGGCAACTGCCAGTGTGTCACCTCAATTATGGCAACCACCAAGTGGAATTCTAATGACCAATGATGTCTCTGAAACTAGTCCTGAAGAGGCTGTGCCCTGCTTTGCTTTGTCCAAGAATGATTCGTATGTTATGTCAGCATCTGGAGGAAAGATCTCCTTGTTCAATATGATGACATTTAAGACAATGACAACTTTCATGCCACCACCACCTGCGGCTACATTTCTTGCCTTCCATCCTCAAGATAACAACATTATTGCCATTGGCATGGATGATTCCACAATTCAGATATACAACGTTCGCGTAGATGAAGTTAAGAGCAAGTTAAAAGGACACTCGAAAAGAATAACTGGCCTTGCCTTTTCTCATGCACTGAATGTGCTAGTTTCATCTGGAGCGGATGCTCAGCTCTGTGTATGGAACTCTGATGGATGGGAAAAGCAGAAGGCTAGATACTTGCAGCTTCCTGCTGGAAGGGCTCCAGCACAATCAGACACACGTGTACAGTTCCATCAGGACCAGGCACATTTTCTGGTTGTACATGAAACTCAGCTTGCAATATATGAAACAACAAAACTAGATTGTGTAAAGCAGTGGGTCCCACGTGAATCTGCCCCCATCTCTCATGCGACATTCTCATGTGATAGCCAGTTGGTATATGCCAGCTTCTTAGATGCCACAGTCTGCGTGTTTAGTGCTGCAAATCTGAGACTACGATGTCGGATCAATCCTTCTGCTTATCTTCCTGCCAGCGTCAGTTCTAATGTACAACCACTAGTGATTGCGGCTCACCCACAAGAACCGCATCAATTTGCAATGGGACTGTCAGATGGGGGAGTTCATGTCTTTGAGCCCCTTGAATCTGAAGGCAAATGGGGTGTGCCACCACCTGTTGAGAATGGGTCAGCAAGCAGTTTGCCAGCTACTCCGGTCGGAGCTTCAGGTTCGGATCAAGCCCAGAGATGA
Protein Sequence
- >Jr12_20250
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPNLGAHGPFQPTPAPVPTPLAGWMSNPATVNHPAVSGGAIGLGAPSIPAALKHPRTPPTNPTVEYPSGESDHVSKRTRPMGISDEVNLPVNVLPVTFPGHSHGQAFNAPDDLPKTVSRTLNQGSSPMSMDFHPGQQTILLVGTNVGDIGLWEVGSRERLVLKNFKVWDISSCSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDDVRQHLEIDAHVGGVNDIAFSHPNKQPCVITCGDDKSIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKVLANTEGIRLLRTLENPSYDASRTSEAVAKPTINPISAAAAAATSAGLADRGVSVVAIAGMNGDVRNFGDVKPRITEESNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAVLALASNAIHLLWKWQRSDRNSSGKATASVSPQLWQPPSGILMTNDVSETSPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADAQLCVWNSDGWEKQKARYLQLPAGRAPAQSDTRVQFHQDQAHFLVVHETQLAIYETTKLDCVKQWVPRESAPISHATFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPHQFAMGLSDGGVHVFEPLESEGKWGVPPPVENGSASSLPATPVGASGSDQAQR