Information report for Jr06_20160
Gene Details
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Functional Annotation
- Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.
Homologous
- Arabidopsis thaliana — AT5G20320
Gene Resources
- Pfam: PF00270 PF00271 PF02170 PF00636
- UniProt: A0A833XPM3
- EMBL: LIHL02000006
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR014001 , IPR014720 , IPR027417 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF15
- SUPFAM: SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- CDD: cd00593 , cd18034 , cd18802 , cd19869
Sequences
CDS Sequence
- >Jr06_20160
ATGCCAGACGGCGAAGTGTCCGGCGGAGCCGATCATCTTATGGCCGTTGCTACGACTTTTTGCGCTACCACCACCTCGCCGCCCGTGGAACGGTCTTTGGGTGTTTCTGGTGTTTATGAAGATGGACAGGAACCACGTTCAAGTGCTCAAGGGACTGGAAAAGACCCCAGAAAGATCGCGAGAAAGTACCAGTTGGAGCTATGCAAGAAAGCTTTGGAGGAGAACATAATTGTTTATTTGGGGACAGGTTGTGGGAAGACCCACATTGCCGTGCTGCTTATATACGAACTTGGTCACTTAATAAGGAATCCCCAGAAGAATGTATGTATTTTTCTCGCTCCAACAGTGGCTCTGGTTCAGCAGCAAGCCAGGGTCATAGAAGACTCTATTGATTTCAAGGTCGGGATCTATGGTGGGAGCTCTAAGCATTTGAAAAGCCATGAAGACTGGAAAAAAGAGATTGAACAGTATGAGATTCTTGTTATGACGCCTCAAATACTTCTGCGTAACTTATACCACTGCTTTATCAGGATGGAGTTAATTGCACTCCTGATATTTGACGAGTGTCATCATGCTCAAATCAAAACAAACCATCCTTATGCAAAAATCATGAAACTCTTCTACAAAACCAATGTTGGAAAAAATCCCCGTATTTTTGGCATGACTGCATCTCCAGTTGTGGGAAAAGGTGCTTCCGATCAAGCAAATTTACCAAAAAGCATCAATAGCCTTGAAAACTTACTCAATGCAAAGGTTTACTCCGTTGAAGATAAGGGAGAATTGGATAATTTTGTAGCGTCTCCTATAGTTAGAGTATATTATTATGGTTCCGTTACAAATGAGGGATCCAGCTCCCATTTGACATACTGTAGTAAACTTGAGGAGATGAAACGTCAGTGCATAACAACACTTAGTATGAAGATAAATGATCATCAAAAGCTACGGAAATCGAAGAAGCTACTAACAAGAATGCAGGATAAGATGTTATTCTGTTTGGAAAACCTTGGCCTTTGGGGAGCATTACAAGCTAGCCGTATTCTTTTGACTGGTGATCACTCTGAGCGGAATGAATTAATAGAGGTGGAAGGAAATTTCAGTGATGATTCTGCATGCGATAGATATCTAGCTCATGCTGCTGAAGTCTTTGCTTCTGAATGTATGAAAGATGGTGCTTCATCTGATCTGTCACGTGTAGAGGTCTTAAAGGAGCCATATTTTTCAAGAAAGCTTTTACGCCTTATTGGAATTCTTTCATCCTTCAGGTTACAACCAAATATGAAGTGTATAATATTCGTAAATAGGATTGTAACTGCGAGATCCTTGTCGTGCATGCTACAGAAGCTTAAGTTTCTAGCTTTTTGGAAGTGTGATTATCTTGTTGGAGTCCACTCTAAAATAAAAAGTATGTCGCGGAAGACCATGAACAATATTCTTGATAGATTCCGATCTGGAGAGTTAAATCTTTTGGTTGCGACTAAAGTTGGTGAAGAAGGGCTGGATATTCAGACATGCTGCCTTGTGATTCGGTTTGATCTTCCAGAAACTGTTTCTAGCTTCATACAATCGAGAGGTCGTGCACGGATGCCTCAGTCTGAATATGCCTTTTTGGTGAACAGTGGCAACCAGAAAGAGCTAGATTTGATAGAAAATTTTCAAAAAGATGAAGATCGAATGAACATGGAAATTGCTCATCGAACATCAAATGAAACTTTTTTGGGTTCTGAAGAAAGAATTTATAAAGTCGATTCATCTGGTGCTTCTATCAGCTCTGGATATAGCATCTCATTACTCTACCAGTATTGTGCAAAACTACCACATGATGAGTATTTTAACCCCAACCCGGAGTTCTTTTATTTTGATGACTTGGGGGGTACTGTCTGCCATATCAATTTACCTTCCAATGCTCCAATAAACCAAATAGTTGGTACACCACAATCTTCATTGGAAGCTGCTAAACAAGATGCTTGTCTGAAAGCAATTGAAAGTTTGCATAAAATGGGTGCCTTGAATGACTATCTCTTGCCTGGGGTAGATGATGCATATATAGATGAAGTGGGGTTGGATTCTTCTAACTCAGATAGCTGTGCAGATGAGAGTTCACGACAAGAACTCCATGAGATGCTTGTGCCTGCTGCCCTAAAGGGACCGTGGACTAATTCGGAAAATCCCGTCCGTCTTAGTTCTTACTATATAGAATTTTGTCCTGATCCCAAGGATAGGATCTATAAAAAGTTTGGTTTATTTGTCAAAGCACCTCTCCCACTAGAGGCTGAGAGAATGGAACTTGATCTTCATCTGGCTCGTGGTAGATCTGTGATGACAAAGTTGGTTCCATCTGGAGTTGCAGAATTCAATCAAATTGAGATTACGTTAGCCAAGAATTTTCAAGAAATGTATCTCAAGGTCATCCTTGACAGATCAGAATTTATTCCTGAACCTGTTTCGGTGGGAAAGAATGATATTTTTATGTCAAGTTCCTTAACCTTCTACCTGTTGCTTCCTGTAATTTTGCATGATAATGAGAGCAAGATTGCTGTAGATTGGAAAATTATTCGTAGATGTTTATCGTCCCCAGTTTTCCGGACTCCAGAAGATGCCATGGTCGAAAAATATCCTTTGGGTGTTTATCTGCAACTTGCCAATGGTTGCAGAAGTAGAAGTGATGTTGAGAATAGTCTAGTGTATGCCCCATACAAAAATGAGTTTTACTTTATTACTAACATCATTCATGGAATGAATGGATACAGCCCTTGTAAGGACTCAGAAACTTCAAGCTACGCAGAGCGCTTATATGAGAAGTTTGGGATTGAGCTTGAGTACCCTGAACAACCTTTTCTGAATGCGAAACCACTTTTTTGCTTGCGTAACTTGCTCTGCAACCGAAAGCCAGAGGATTCAGAATCGCATGAACTGGAGGAATACTTCATTGATTTGCCTCCTGAGCTATGTCAGTTGAAGATCATAGGCTTTTCAAAAGATATCGGGAGTTCAATATCTTTGTTACCATCAATCATGCATCGACTGGAAAACTTGCTTGTGGCCATTGAACTGAAGCAAACCTTTTCTTCTGCATTCCCAGAAGGAGCTGAAGTTACATGCCATCGACTTCTAGAAGCAATCACCACTGAGAAGTGCCAGGAGCGCTTTTCCCTCGAAAGACTTGAAATACTTGGTGATGCTTTTCTCAAATTTGCTGTTGGACGGCACCTTTTTATTTTGCATGGTACTCTTGATGAAGGAGAACTTACAAGGAAACGTTCTCATGCTGTGAACAATTCCAATTTGTACAAGCTAGCCACTAGGAGCAAGTTACAGGTCTACATCCGTGATTATTCGTTGGATCCCTGCCAATTCTTTGCTCTGGGCCGCCCTTGCCCAATAATCTGCAACAAGGAGACAGAAGCAGCTGTTCATTTCCAGCATTCAAGTGGTCTAGCAGATCATGCAAGTTCCAGTCCAACTAGATGCTGTAGAGGTCACCACTGGCTTCATAAGAAAACAATCGCTGATGTGGTTGAAGCTCTTGTTGGAGCGTTCATAGTTGATAGTGGCTTCAGAGCTGCAATTGCATTTCTTCGATGGATTGGAATACAGGTAGATTTTGAAGCCTCACAAGTTTCTAAGGCCTGCATAGCAAGCACTAGCTACATCCCGCTTGCTACTTCTTTGGACATTCCTTCCCTTGAAAATTTGTTAGGGTATCAGTTTCTCCATAGAGGTCTGCTTATACAGGCATTTGTACATCCTTCGCACAACAAAAATGGAGGAGGCTGCTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTACTTAATTACATCATATCTTTATTCAGCTTATCCAAAATTGAATCCTGGTCAATTGACAGATTTGAGATCTGTGTTGGTGAATAATGAGGCATTTGCCAATCTTGCGGTAGAACGATCCTTCCACAAATTTCTTATATGTGATTCCAGTAGCCTTACTGAGGCAATTGAGATGTATGTGGATGCTGTTAAAATGCAAGCGCCTGAAGGGAGTCTTCTTGAGGGGCCAAAATGTCCGAAGGCTTTGGGTGACTTGGTAGAGTCTTCTCTAGGTGCCATTCTTCTTGATTCAGGGTTTAATCTGAGGCTTATGTGGAAGATAATGCTTTCCTTTTTGGATCCAATCATGAGGTTCTCCAGTTTGCAGATTAGTCCTTTCAGGGAACTGCAAGAACTTTGCCAATCTTATAATTGGGATCTGCAGTTGTTAACATCAGAGAAGGGTGGAATGTCTCTGGTTGAAGCACAAGTGAATGGAAAAGATGTTTGTGCAACTGCCTCTGCAACATACCGAAACAAGAAAGATGCTACTAGGATCGCTTCGCGAAAAATATCCACAATTTTGAAGGCTCAAGGCTACATACCGAAGTCAAAAACTTTGGAGGAAGTTTTGAATTCAAGCTGCAAGATGGAAGCCAGACTGATTGGATATGATGAAACACCTATAGATGTAAATACCCCTGATGCAATTGGATTTGAGAAGTTGACGGTACAACAGCCTTTTGACAGAGATTTTGAGCCAAAAATTCTAGCCCTCACTAAAGTATCCGATAGTAATCCCCCATGCGTAACACCTGTTGTTAGACACCCACCTGGCACCATAAGTGGGCAGGCTTGCAGGACAGCTGAAAATCCAAGCTGTGATCCTGACCTACAGCCCACAGGTGGGTCAAACAAAGCAACGGCAAGATCACGATTGTATGAAGTCTGTGCTGCTAACTGTTGGAAAGCCCCTCTATTTGAATGTTGCAGAGAGGAAGGACCAAGCCACTTAAAGTTATTCACTTTCAAGGTGATTGTGGAAGTAGAAGCCCCAGATGTTATTTTGGAGTGCTTGGGAACACCGCAGTCGAAAAAGAAAGATGCAGCAGAGCATGCAGCAGAAGGAGCCCTTTGGTACTTAAAGCACCAAGGGTTGTTTCTTGAGAGCGACTGA
Protein Sequence
- >Jr06_20160
MPDGEVSGGADHLMAVATTFCATTTSPPVERSLGVSGVYEDGQEPRSSAQGTGKDPRKIARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYELGHLIRNPQKNVCIFLAPTVALVQQQARVIEDSIDFKVGIYGGSSKHLKSHEDWKKEIEQYEILVMTPQILLRNLYHCFIRMELIALLIFDECHHAQIKTNHPYAKIMKLFYKTNVGKNPRIFGMTASPVVGKGASDQANLPKSINSLENLLNAKVYSVEDKGELDNFVASPIVRVYYYGSVTNEGSSSHLTYCSKLEEMKRQCITTLSMKINDHQKLRKSKKLLTRMQDKMLFCLENLGLWGALQASRILLTGDHSERNELIEVEGNFSDDSACDRYLAHAAEVFASECMKDGASSDLSRVEVLKEPYFSRKLLRLIGILSSFRLQPNMKCIIFVNRIVTARSLSCMLQKLKFLAFWKCDYLVGVHSKIKSMSRKTMNNILDRFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVNSGNQKELDLIENFQKDEDRMNMEIAHRTSNETFLGSEERIYKVDSSGASISSGYSISLLYQYCAKLPHDEYFNPNPEFFYFDDLGGTVCHINLPSNAPINQIVGTPQSSLEAAKQDACLKAIESLHKMGALNDYLLPGVDDAYIDEVGLDSSNSDSCADESSRQELHEMLVPAALKGPWTNSENPVRLSSYYIEFCPDPKDRIYKKFGLFVKAPLPLEAERMELDLHLARGRSVMTKLVPSGVAEFNQIEITLAKNFQEMYLKVILDRSEFIPEPVSVGKNDIFMSSSLTFYLLLPVILHDNESKIAVDWKIIRRCLSSPVFRTPEDAMVEKYPLGVYLQLANGCRSRSDVENSLVYAPYKNEFYFITNIIHGMNGYSPCKDSETSSYAERLYEKFGIELEYPEQPFLNAKPLFCLRNLLCNRKPEDSESHELEEYFIDLPPELCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKQTFSSAFPEGAEVTCHRLLEAITTEKCQERFSLERLEILGDAFLKFAVGRHLFILHGTLDEGELTRKRSHAVNNSNLYKLATRSKLQVYIRDYSLDPCQFFALGRPCPIICNKETEAAVHFQHSSGLADHASSSPTRCCRGHHWLHKKTIADVVEALVGAFIVDSGFRAAIAFLRWIGIQVDFEASQVSKACIASTSYIPLATSLDIPSLENLLGYQFLHRGLLIQAFVHPSHNKNGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLNPGQLTDLRSVLVNNEAFANLAVERSFHKFLICDSSSLTEAIEMYVDAVKMQAPEGSLLEGPKCPKALGDLVESSLGAILLDSGFNLRLMWKIMLSFLDPIMRFSSLQISPFRELQELCQSYNWDLQLLTSEKGGMSLVEAQVNGKDVCATASATYRNKKDATRIASRKISTILKAQGYIPKSKTLEEVLNSSCKMEARLIGYDETPIDVNTPDAIGFEKLTVQQPFDRDFEPKILALTKVSDSNPPCVTPVVRHPPGTISGQACRTAENPSCDPDLQPTGGSNKATARSRLYEVCAANCWKAPLFECCREEGPSHLKLFTFKVIVEVEAPDVILECLGTPQSKKKDAAEHAAEGALWYLKHQGLFLESD