Information report for itb11g18160
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Actinidia chinensis: Achn113981, CEY00_Acc26800
- Capsicum annuum: CA03g25230, T459_08258
- Nicotiana attenuata: A4A49_14224
- Nicotiana benthamiana: Niben101Scf02853g02002.1
- Nicotiana tabacum: XP_016435657.1, XP_016435656.1, XP_016468899.1, XP_016468900.1
- Petunia inflata: Peinf101Scf02778g00033.1
- Solanum lycopersicum: Solyc03g111590.2.1, Solyc03g111590.3
- Solanum tuberosum: PGSC0003DMP400026608, PGSC0003DMG400015167
- Vitis vinifera: VIT_17s0000g09980
Sequences
CDS Sequence
- >itb11g18160
ATGGGCGAGGGTAGCAGTGGGGTGGAGGTGCTCTCTTGGCTGAAAACCCTACCAGTGGCTCCAGAGTACCACCCAACCCTAGAGGAGTTCCAAGATCCCATTGCCTACATTTTCAAGATCGAGGGCGAAGCTTCCAAGTATGGAATCTGCAAAATCGTGCCCCCGGTGGGCATGCCGCCGAAGAAAACCGCCATTGCTAACCTCAACAAGTCGCTCGCGGCGCGGCCTCACTCCACATTCACTACGCGGCAGCAGCAGATCGGGTTCTGCCCCAGGCGGCACCGGCCGGTGCAGAAACCGGTGTGGCAGAGCGGGGAGAACTACACGCTGCAGCAATTCGAGGCGAAAGCCAAAGGGTTCGAAAAGAATTACTTGAAGAAGGGCTCGAAGAAGGGGCTGTTGCCTCTGGAGGTGGAGTCGCTGTACTGGAAGGCCACGGTGGACAAGCCGTTCTCCGTGGAGTACGCGAACGATATTCCCGGGTCGGCTTTTGCGCCGAAGAAAGCGGATTCCGTTGGGGCGGTTGGGGAAGGGGCGACTGTGGCTGAGACAGAGTGGAATATGAGAGGGGTTTCGAGGGCCAAAGGCTCTCTGCTCAAATTCATGAAGGAAGAGATACCCGGGGTTACTTCGCCTATGGTCTACATTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTTGAGGACCATGACTTGCATAGCTTGAATTACCTCCATATGGGTGCAGGGAAGACCTGGTATGGTGTTCCCCGAGATGCAGCCGTGGCATTTGAGGAGGTCATTCGCCTTCAGGGCTATGGAGGAGAGATCAATCCTCTTGTTACTTTTGCTACCCTTGGTGAGAAGACCACTGTCATGTCGCCAGAAGTACTGCTTAATGCTGGTGTTCCATGCTGCAGGTTGGTGCAAGATGTTGGAGAATTTGTTGTCACCTTTCCAAGAGCTTATCACTCTGGGTTTAGCCATGGGTTTAACTGTGGGGAGGCGTCTAATATTGCTACTCCTGGATGGTTGAGGGTTGCAAAAGATGCTGCAATCCGTAGGGCATCAATTAATTGCCCTCCAATGGTCTCACACTTCCAGTTGCTCTATGATCTAGCACTTTCATTCTGTTCAAGGATGTCGAAGAACATTCGAACAGAACCAAGGAGTTCCAGGCTGAAGGACAAGAAGAAGGATGAAGGAGAAGCATTGGTCAAGGACTTTTTTGTTCAGGATTTGGAGCAAAATAATTCTCTTCTTCACATGCTTGGAAGAGGATCTTCAGTTATACTTCTTCCGAGGAATTCTACTGAAAATTTTATTCCCGCAAATTTTCAAGGATCCCAGTTTAAGGTAAAGCCCGGGCTGTTCTCCAGCATAGGCTGTCCAGATGACGCGGTGGAAACGGGAAAAGATTTAGATCTTGACTATCCATTGATAGGAAGAAAACAGGGAATGAAACAAACACCGGGAGTATGTTCAAATAAAGGAAAATCTTCTCCATTACGTGAAAGTAGTAGGCTTCCTATTTCGGGCAGAGACTCTAATGTTTCGTCGGCCATTGGTCATGCTAATGGGAACATGAATACAGCTAGTGAAAGAGCTTATTATAACTGTGATAGGTCATCCGAGCACGGACTATTTTCATGTGTAACTTGCGGTATACTTTGTTACACTTGTGTTGCCATCGTTCAACCGACAAAAGCAGCTGCTCGTTGCCTGATGTCAACTGATTACGCTAGTTTCAGTCAATGGAGAGAAGCTGGGGGTGGGACCACGGCTGTGGATGCAGATACAAATGTTACCATGATAGGTTCATCTTCAGGGTTGATGGTAAGGAGGCCACCGGATAGTTTGTTTGATGTCTCAATAAAACCTACTAGTCAATTAAGCGATGAAAGCGTAGGAGTGGTTTCCACTAGTAGAACGCACAAAGTGAGTTCTTCCCTTGGTCTGTTGGCTTCAACTTACGGTGATTCTTCCGACTCTGAGGCCGATGAGGCCGAAGCAGATGTTTCTGTCAAGGATAGTGAAGGCAGATCTATGGATTGTTCACCCGAGGATGAGATTCCTCTCCAGCTTGTTATTGACCCTTATGCAGATCACAGACAGAGAAGAGCTCAACGTGATTCAGAAACCGCTAATCGTACATCAATACTGTCATGTAGTTTGCAAGATAGACGAGCTGTGCCAAGCTGTGCTCCGTCTGCCCAAAAGCCGCCAGAAAGAGCTGTCAAGAATGCTCTCGTCGCACCCTTTGGGGATGCACCTATGCCATCCGATGAAGATTCTTCCAGAATGCACGTTTTCTGTCTCCAACACGCTGTTGAAGTGGAAAAAGAGCTCCAGTTGATCGGTGGGGCTCACATTTTTCTTCTCTGTCATCCTGATTATCCGAAACTAGAAGCTCAAGCGAAAAAAATAGCCAAAGAGTCTGGAAGTGATTATCCGTGGAATGAGATTTTGTTCCAGGAAGCCACTAAAGATGATGAGAAGCTCATCCGGTCAGCTTTAGAAAGTGAAGAAGCAATTCACGGGAATGGGGACTGGGCTGTGAAATTGGGCATCAATCTCTTCTACAGTGCCAATCTTAGTCGCTCAACTCTCTACCGTAAACAGATGCCTTACAACTCCGTGATTTACAGTGCATTCGGATGCAGTTCTCCGGGTGGTTCTCCTACTTCGTCGGAAAACAATATGAAGGTTCCCGGGAAGCATAAGAGAATAGTTGTTGCTGGAAAATGGTGCGGGAAAGTCTGGATGTCTAACCAGGTTCATTCTCTTCTTGCCGAGAGGGTTTCTGATGAACAAGAGATACGAAGAAACGCTTCTTCTCGGTTCGTTCCCGATGGAAAGCCGCCGCCTATGAGGTCTTTGGAGTGTAACCTGACTACTGAAACAGCCACTCCAGCTTGCAGGACTGGAAAAAAGCGGAAGTCTGTAACAGAAAGTAGGCCTCCCGCAAACTCCAAATCTGTCAAGACTGATGATGATGATCCCGATGAACCTTTATCCATTGGTTTCTCTCAACAGAAATCGAAAACTAATCTCAGAAACAAGCGAATTAAGCGAGAGGCAGCAGCTGAACCTCAAAAGGACAGTGACAAGAAGAACAAAGGAGGAGGAGTCGACTTTGTTTCCGAAGATGAGGTAGAAGGTGGGCCTAGCACACGGCTGAGAAGAAGAGCCCCGAAACCAGTTAAACAACAGTTGGAAACTAAACCAGCTAAACAACAGTTGGAAACCAAACCAGTCAAAGCAAAACCAGCGTTGAAGAAGCCCGAGCCTAAGAAACCAAAGCAACAAGAGAATAAGAAGGCAAAGAAAGGCGGGGGCGGCCCCGCCATGAAGGTTCCAGCTGGTAATAGCAGCAACCCTAAGAAAACTCCAGCAGTGAAGAATCCTCCAATTAGTAATAGCGTTAATAAAAAGGGCGTTCCAAATAAGGCTCCATCCAACAGTGCAAAGGCTCGGGATGAGGACGGAGAATATCCATGTGACCTGGAGGGTTGTGTGATGAGTTTCGACTCAAAGCAAGAACTCGTAATGCACAAAAAGAACATATGCCCAGTAAAGGGGTGTGGGAAGAAGTTCTTTTCCCACAAGTACTTGGTGCAACATCGTCGTGTCCACATGGACGACCGCCCCTTGAAATGTCCATGGAAAGGTTGCAAGATGACATTCAAGTGGGCATGGGCTCGAACCGAACACATTAGAGTTCACACCGGTGCTCGTCCTTATGTTTGCGCTGAGCCTGGCTGCGGCCAGACATTTAGGTTCGTGTCTGATTTCAGTCGCCACAAGCGGAAGACTGGCCATTCGACGAAGAAGTGA
Protein Sequence
- >itb11g18160
MGEGSSGVEVLSWLKTLPVAPEYHPTLEEFQDPIAYIFKIEGEASKYGICKIVPPVGMPPKKTAIANLNKSLAARPHSTFTTRQQQIGFCPRRHRPVQKPVWQSGENYTLQQFEAKAKGFEKNYLKKGSKKGLLPLEVESLYWKATVDKPFSVEYANDIPGSAFAPKKADSVGAVGEGATVAETEWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVIRLQGYGGEINPLVTFATLGEKTTVMSPEVLLNAGVPCCRLVQDVGEFVVTFPRAYHSGFSHGFNCGEASNIATPGWLRVAKDAAIRRASINCPPMVSHFQLLYDLALSFCSRMSKNIRTEPRSSRLKDKKKDEGEALVKDFFVQDLEQNNSLLHMLGRGSSVILLPRNSTENFIPANFQGSQFKVKPGLFSSIGCPDDAVETGKDLDLDYPLIGRKQGMKQTPGVCSNKGKSSPLRESSRLPISGRDSNVSSAIGHANGNMNTASERAYYNCDRSSEHGLFSCVTCGILCYTCVAIVQPTKAAARCLMSTDYASFSQWREAGGGTTAVDADTNVTMIGSSSGLMVRRPPDSLFDVSIKPTSQLSDESVGVVSTSRTHKVSSSLGLLASTYGDSSDSEADEAEADVSVKDSEGRSMDCSPEDEIPLQLVIDPYADHRQRRAQRDSETANRTSILSCSLQDRRAVPSCAPSAQKPPERAVKNALVAPFGDAPMPSDEDSSRMHVFCLQHAVEVEKELQLIGGAHIFLLCHPDYPKLEAQAKKIAKESGSDYPWNEILFQEATKDDEKLIRSALESEEAIHGNGDWAVKLGINLFYSANLSRSTLYRKQMPYNSVIYSAFGCSSPGGSPTSSENNMKVPGKHKRIVVAGKWCGKVWMSNQVHSLLAERVSDEQEIRRNASSRFVPDGKPPPMRSLECNLTTETATPACRTGKKRKSVTESRPPANSKSVKTDDDDPDEPLSIGFSQQKSKTNLRNKRIKREAAAEPQKDSDKKNKGGGVDFVSEDEVEGGPSTRLRRRAPKPVKQQLETKPAKQQLETKPVKAKPALKKPEPKKPKQQENKKAKKGGGGPAMKVPAGNSSNPKKTPAVKNPPISNSVNKKGVPNKAPSNSAKARDEDGEYPCDLEGCVMSFDSKQELVMHKKNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKK