Information report for HanXRQChr01g0030961
Gene Details
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Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Actinidia chinensis: CEY00_Acc15976
- Citrullus lanatus: Cla97C05G079940
- Glycine max: Glyma.19G261200, Glyma.03G262100
- Gossypium hirsutum: Gohir.D07G138400, Gohir.A07G133700
- Juglans regia: Jr07_10040
- Lactuca sativa: gene-LSAT_3X140760
- Manihot esculenta: MANES_05G015200
- Medicago truncatula: Medtr7g118350
- Populus trichocarpa: POPTR_002G181400v3
- Prunus persica: PRUPE_2G200900
- Sesamum indicum: SIN_1002242
- Vitis vinifera: VIT_15s0048g02380
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: A0A251VTW4
- EMBL: CM007890
- OMA: CGFHKYF
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF78
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- SMR: A0A251VTW4
- CDD: cd00593 , cd18034 , cd18802 , cd19869
- STRING: 4232.A0A251VTW4
Sequences
CDS Sequence
- >HanXRQChr01g0030961
ATGGACTGGAGGGAAGGAAGGGGTTATTGGGAGAGGGATCGATTGGGTACCAATGATTTGGTGTTCCGTCCAGGTTCTTGGGAACCTGGCTCTAACAGAGATATCAAGGGGCATGTTGACAAAAATCTTGACAGTAATCAACAAGAGTTGAAAAAGGATGAATCCAAGAAAAAAGTGGCCAAGGAGCATGCGCGCAAGTACCAGTTAGATGTTCTTGAACAGGCTAAAAACAAAAATACCATAGCTTTTTTAGAGACAGGGGCAGGGAAGACCCTTATTGCTGTACTCCTTATAAAGAGCGTGTATGCTGATTTGCATAAACAGGGCAAGAAGATGCTGGCCGTCTTTTTGGTTCCAAAGGTGCCACTTGTGTATCAGCAAGCAGAAGTTATTCGTGATCAAACGGGCTATCAAGTTGGTCATTATTGTGGTGAGATGGGCCAAGATTTTTGGGATGCCAGGAGATGGCATCGGGAATTCGAGAAGAAACAGGTTCTAGTGATGACTGCTCAAATTCTTTTGAATATTCTGAGACATAGCATAATAAAAATGGAAGCTATAAATTTGCTTATTTTAGACGAGTGCCATCATGCTGTAAAGAAGCATCCGTATTCTTTGGTGATGTCTGAGTTCTATCACACAACAACTAAGGAGAAAAGGCCTTCAGTTTTCGGAATGACCGCCTCACCTGTTAACTTAAAAGGTGTATCTAGTCAAGTAGATTGTGCCATAAAGATTCGTAATCTGGAAACCAAACTAGATTCTGTTGTTTGTACCATAAAAGACCGTAAAGAGCTTGAGAAACATGTTCCAATGCCAATAGAAACTGTAGTGGAGTACGATAAAGCAGCTAGTTTATGGTCACTACATGAGCAGATCAAGCAAATGGAAGTTGCAGTTGAGAAAGCTGCACAATCGAGTTCTAGAAGAAGCAAATGGCAGTTTATGGGAGCCAGAGATGCTGGCGGGGTTAAGGATGAGCTTCGCCAAGTTTATGGTGTCTCCGAAAGAACAGAAGGTGATGGGGCTGCTAATCTAATTCAAAAACTCAGAGCCATTAATTACGCTCTTGATGAATTGGGCCAGTGGTGTGCTTACAAGGTTGCAGAGTCATTTTTGACAGCATTGCAAAGTGATGAAAGGGCAAACTTCCAGCTGGATATAAAGTTTCAAGAATCCTACTTGAGCAAAGTTGTTTCTCTATTGCAATGCCAACTATCTGAGGGTGCAGCTCTACAAAATAACGCTGAAGTTAGTGAAAAGGGGTCTGAAACCACCTGCCTTGATGAGATCGAGGAAGGCGAACTTCCCGACAGCCATGCGGTCTCTGGGGGAGAGCATGTGGATGTGGTAATTGGAGCTGCTGTGGCTGATGGAAAAGTGACTCCAAAAGTCCAGTCTCTGATCCAAATACTTCTCAAGTATCAACACATGGACGATTTTCGCGCCATTATATTTGTTGAACGAGTTGTCGCTGCCCTTGTTCTTCCAAAGGTTTTTGCGGAGCTTCCTTCTCTAAACTTTATTAATTCAGCAAGTCTGATAGGGCACAATAATAGTCAAGAAATGCGGACTTCCCAAATGCAGGATACTATTTCCAAATTTCGAGATGGACGCGTGACACTTTTAGTCGCCACCAGTGTTGCTGAGGAAGGGCTTGATATTCGCCAATGTAATGTTGTTATTCGGTTTGACCTTGCTAAAACCGTGTTGGCATATATCCAGTCTCGGGGCCGGGCCAGAAAGCCCGGGTCTGACTATATCTTAATGGTTGAGAGAGGAAACTTGTCGCATGAGGCGTTTCTGAGAAATGCTAGAAATAGTGAAGAAACGTTGAGGAAAGAAGCAATTGAAAGAACTGACCTTAGTCATCTTAGGGATACCTCAAAGTTGATTTCCATAGAGCCAACTCATGGTACGATCTACCAGGTGGAGTCAACTGGTGCTGTTGTGAGTTTAAATTCTGCTGTTGGCCTTATTCATTTCTATTGCTCTCAACTGCCTAGTGACAGATATTCAATACTTCGTCCCGAGTTCACTATGGAGCGGCACGAGAAGCCCGAAGGCCCCACTGAATTTTCATGCAGACTTCAACTTCCTTGTAACGCACTATTCGAAAGACTTGAAGGCCCTGTGTGCAGTTCAATGCGCATCGCGCAACAGGCTGTTTGTTTAGATGCTTGTAAGAAGCTTCATGAAATGGGAGCATTCACTGACATGCTCTTACCAGATAAAGGAAGTAAGGGAGAAGGTGAGAAAGCTGATGAAAATGATGAAGGAGATCCCCTACCAGGAACCGCTAGGCATAGGGAGTTTTATCCGGAAGGTGTTGCTAATATTCTACAGGGGGATTGGATTTTATCTGGTAGAGATGAATGTGATGACTCCAAACTGTTTCATCTGTATATGTATGTTGTGAAATGTTTTAACGTCGGGTCCACAAAAGATCCGTTTTTGACTCAAGTTTCAGAGTTTGCAGTGCTTTTCGGCAACGAATTGGATGCAGAGGTGTTATCGATGTCCACGGAGTTATTTATCGCCCGAACAATGACAACAAAGGCATCTCTTGTCTTTCGGGGGTGTATTGAAGTTACCAAAAGCCAGTTGGATTCATTGAAAAGCTTTCATGTACGGTTAATGAGCATTGTACTGGATGTGGACGTGGAGCCATCAACTACTCCATGGGATCCAGCTAAAGCCTACTTATTTGTTCCGGTTCATGGTGTAAAAGAAGAAGAAATAGATTGGGATATTGTAGAGAACATTATAAAAACATCTGCATGGAAAAACCCACTTCAGAGAGCCCGGCCCGATGTATTTCTTGGAACAAATGAACGAACACTTGGTGGGGACCGCAGGGAATATGGTTATGGAAAATTACGTGGACAAAAATCACATCCTACGTATGGTGTTAGAGGAGCTGTAGCACAGTTTGATGTTGTCAAAGCATCTGGATTGGTTCCTGATCGAGTGGCTAATGGGGGGGATTTGACACATGGTAAATTGATGATGGCTGATTCTTGTACCAACGCACAGGATCTTGTTGGAAGGATTATTACCGCTGCTCATTCTGGGAAGAGGTTTTATGTCGATTCTGTACGATATGAAATGACGGCTGAGAACTCGTTTCCTAGGAAAGACGGTTACCTTGGTCCACTTGAGTACACATCATATGCTGATTACTATAAGCAGAAGTATGGAGTAGAACTGAAGTATAAACAGCAACCACTGATAAGAGGGCGTGGGGTGTCTTATTGCAAAAATCTCCTGTCACCTCGGTTTGAGCATTCAGAAGGTCATGAAGGTGAATCAGAAGATACTCCTGATAAAACATATTATGTGTTTCTCCCTCCAGAGCTGTGCTTTGTGCACCCTCTTAGTGGATCGTTAGTTCGCGGTGCACAAAGATTACCGTCAATCATGAGGAGGGTTGAAAGCATGCTGCTTGCTGTTCAGCTAAAGAATGTTATTAATTACACTGTTCCTGCATATAAGATTTTGGAAGCTCTGACTGCAGCCTCATGCCAAGAAACGTTTTGCTATGAAAGAGCGGAGCTGCTAGGAGATGCCTACCTAAAATGGGTTGTTAGTCGTTATCTTTTTCTCAAACATCCACAAAAACATGAAGGCCAGCTCACCAGAATGAGACAGCAAATGGTTAGCAACATGGTATTGTACCAATATGCTCTTTCCAAGGGGCTTCAATCTTATATCCAAGCGGACCGATTTGCTCCGTCTCGATGGGCTGCTCCAGGGGTTCTACCCGTTTTTGATGAGGATGTTAAGGAAACAGATTTCTTATCAGATCAAGATATTAATGCAATCACCGAGACTTTAACAGCAAACCATGACGAGGATGACGAGCTGGAGGATGGTGAGCTGGATGAGGGTGATTCAAGTTCTTATCGGGTTTTATCCAGTAAGACGCTTGCTGATGTGGTTGAAGCGTTAATTGGGGTTTATTACGTTGAAGGTGGAAAACAAGCTGCTAATCATTTCATGAAATGGGTTGGGATCGAGGTTGATTTTGATCCCGCCACGGAGATGGGGACACAAACAGTGCCAGCTGGCGGTGTTCCAGATAGCATACTACGGAGTGTTGATTTTGATTCCATAGAGGGCAGTTTGAACTTTAAGTTTTGTGATAGAAGTCTGCTTGTTGAAGCCATTACTCATGCTTCTAGACCATCTACTGGTGTTTCATGTTACCAACGGTTGGAGTTTGTAGGGGATGCGGTTCTCGATCATCTTATTACAAAACATTTGTTTTTCATGTACACGGATCTTCCACCGGGACGTTTAACCGATCTGCGGGCGGCTGCTGTAAATAATGAGAATTTTGCACGTGTTGCTGTCAAACATAATCTTCATTTGCATCTCAGGCATGGTTCAAGTGCCCTAGAAAAACAGATACGAGATTTTGTGAAGGAGGTTGAAAGTGAAGTGTCAAAGCCAGGTTTCAACTCGTTTGGTCTGGGTGATTGCAAAGCTCCAAAAGTCCTCGGTGACATTGTTGAATCTATTGCTGGTGCTATCTTCTTAGACAGCCAGCGGAACACATCATTCGTATGGAAGGTCTTCCAGCCACTGTTGCAACCAATGGTGACACCAGAGACACTCCCAATGCATCCAGTGCGGGAGCTACAAGAACGTTGTCAACAACAGGCTGAAGGACTAGAGTACAAGGCGACTCGAAATGGTAATTTGGCTACCGTCCAAGTGTTTGTCGATGGGGTCCAGGTCAGCATTGCTCAAAATCCCCAAAAGAAAATGGCACAAAAGTTGGCTGCTCGTAATGCTCTTGCTGCTTTGAAAATGAAAGAAACCGAAGCAGCAGCAGCCAAAGAGAAGGAAAACGAAGAGAATGGAAAGAAGAAAAATGGCAGCCAAACCTTTACCAGACAGACTTTGAATGACATTTGTTTGCGCAGAAATTGGCCAATGCCATTGTACCGGTGTGTGAGTGAAGGTGGTCCTGCACATGCAAAACGGTTTATATTTGCTGTGCGGGTGAATACTTCTGATAAAGGGTGGACAGACGAATGTGTTGGAGAGCCTATGCCAAGTGTAAAGAAAGCTAAAGATTCTGCTGCGGTTCTTCTGTTGGAGCTTTTAAATAGGTGGTACGCATAA
Protein Sequence
- >HanXRQChr01g0030961
MDWREGRGYWERDRLGTNDLVFRPGSWEPGSNRDIKGHVDKNLDSNQQELKKDESKKKVAKEHARKYQLDVLEQAKNKNTIAFLETGAGKTLIAVLLIKSVYADLHKQGKKMLAVFLVPKVPLVYQQAEVIRDQTGYQVGHYCGEMGQDFWDARRWHREFEKKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTTKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSVVCTIKDRKELEKHVPMPIETVVEYDKAASLWSLHEQIKQMEVAVEKAAQSSSRRSKWQFMGARDAGGVKDELRQVYGVSERTEGDGAANLIQKLRAINYALDELGQWCAYKVAESFLTALQSDERANFQLDIKFQESYLSKVVSLLQCQLSEGAALQNNAEVSEKGSETTCLDEIEEGELPDSHAVSGGEHVDVVIGAAVADGKVTPKVQSLIQILLKYQHMDDFRAIIFVERVVAALVLPKVFAELPSLNFINSASLIGHNNSQEMRTSQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLRDTSKLISIEPTHGTIYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFTMERHEKPEGPTEFSCRLQLPCNALFERLEGPVCSSMRIAQQAVCLDACKKLHEMGAFTDMLLPDKGSKGEGEKADENDEGDPLPGTARHREFYPEGVANILQGDWILSGRDECDDSKLFHLYMYVVKCFNVGSTKDPFLTQVSEFAVLFGNELDAEVLSMSTELFIARTMTTKASLVFRGCIEVTKSQLDSLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVHGVKEEEIDWDIVENIIKTSAWKNPLQRARPDVFLGTNERTLGGDRREYGYGKLRGQKSHPTYGVRGAVAQFDVVKASGLVPDRVANGGDLTHGKLMMADSCTNAQDLVGRIITAAHSGKRFYVDSVRYEMTAENSFPRKDGYLGPLEYTSYADYYKQKYGVELKYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEGESEDTPDKTYYVFLPPELCFVHPLSGSLVRGAQRLPSIMRRVESMLLAVQLKNVINYTVPAYKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKHPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDVKETDFLSDQDINAITETLTANHDEDDELEDGELDEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKQAANHFMKWVGIEVDFDPATEMGTQTVPAGGVPDSILRSVDFDSIEGSLNFKFCDRSLLVEAITHASRPSTGVSCYQRLEFVGDAVLDHLITKHLFFMYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHLHLRHGSSALEKQIRDFVKEVESEVSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSQRNTSFVWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKATRNGNLATVQVFVDGVQVSIAQNPQKKMAQKLAARNALAALKMKETEAAAAKEKENEENGKKKNGSQTFTRQTLNDICLRRNWPMPLYRCVSEGGPAHAKRFIFAVRVNTSDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNRWYA*