Information report for GSCOC_T00042622001
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Actinidia chinensis: Achn113981, CEY00_Acc26800
- Capsicum annuum: CA03g25230, T459_08258
- Nicotiana attenuata: A4A49_14224
- Nicotiana benthamiana: Niben101Scf02853g02002.1
- Nicotiana tabacum: XP_016468899.1, XP_016435657.1, XP_016435656.1, XP_016468900.1
- Petunia inflata: Peinf101Scf02778g00033.1
- Sesamum indicum: XP_011072922.1, SIN_1017396, XP_011072923.1
- Solanum lycopersicum: Solyc03g111590.2.1, Solyc03g111590.3
- Solanum tuberosum: PGSC0003DMP400026608, PGSC0003DMG400015167
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A068V3I4
- EMBL: HG739178
- OMA: MRFREPS
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- OrthoDB: A0A068V3I4
- STRING: 49390.A0A068V3I4
Sequences
CDS Sequence
- >GSCOC_T00042622001
ATGGCTTCAGAAGCTTCTTCAACCCCAGTTGCCAGTGGAAATATTGAAGTATTTTCTTGGCTTAAAACCCTACCTGTAGCTCCAGAATATCACCCAACCCTAGCTGAATTTCAAGATCCAATTGCTTACATTTTCAAGATTGAAAAAGAAGCTTCCCAATATGGGATTTGCAAAATTGTTCCCCCTGTTCCAGCACCTCACAAGAAAACTGCCGTTTCTAACCTTAACAAATCACTCGTGGCCCGGTCTGGTTCTCCTACATTTACCACTAGGCAGCAGCAGATCGGATTCTGCCCAAGAAAACAGCGCCCTGTTCAGAAACCGGTGTGGCAGAGTGGGGAGAACTATACCCTGGAAGAATTTGAGGCTAAGGCAAAAGCATTTGAAAGGAATTACTTGAAAAAGAGTAGGAAGAAGTGTTTGATTCCATTAGAGATTGAAACTCTTTACTGGAAAGCCATTGTGGATAAGCCCTTTTCAGTAGAGTATGCAAATGATATGCCTGGCTCGGCATTTGCCCCGAGAAGGGGTGGAAAGGAGGGGGGAGGCGAGGGGAGTAATGTTAATGCTAATGTGACAGTTGGGGACACTGAGTGGAATATGAGAGGCGTTTCTAGGGCTAAAGGGTCTCTGTTGACCTTTATGAAGGAGGAAATACCCGGTGTGACTTCGCCTATGGTGTATGTTGCCATGATGTTTAGTTGGTTTGCTTGGCATGTGGAGGATCATGACTTGCATAGCTTGAATTACCTGCATACCGGTGCAGGGAAGACATGGTATGGTGTGCCTTGGGATGCGGCTGCAGCGTTCGAAGAGGTGATCAGGGTGCATGGCTATGGGGGAGAGATCAATCCTCTTGTTACGTTTTCAACACTTGGTGAGAAGACCACAGTCATGTCACCTGAGGTACTTATTGATGCAGGTGTTCCATGCTGCAGGTTGGTGCAAAATGCTGGAGAATTTGTTGTTACTTTTCCAAGGGCCTATCACTCAGGGTTTAGTCATGGGTTTAACTGTGGTGAGGCTGCTAATATTGCTACTCCTGGATGGCTCACTGTTGCAAAAGATGCTGCAATTCGTAGGGCTTCAATTAATTGTCCTCCAATGGTTTCCCACTTTCAGTTGTTATATGATCTGGCACTTTCATCTTGTTCAAGAGTACCAAGGGGGGTTCGCATGGAACCACGGAGTTCACGGCTAAAGGATAAGAAGAAGGGTGAAGGAGAAATGTTGGTAAAAGACCTATTTGTACAAGATGTGATGCAGAACAATGATCTACTTTATATGCTGGCTGAGGGATCTTCAGTTGTAATTCTTCCTCAAAATTCCGTTGTCAGTTCTTTTAGCTCAAATTCAAAAGCTGGTTCGCAGTCACAGGTACAGCCCGGGTTGTTTCCCAGTTTGGGCAGTCCAGACCTCATGATGAAAACAACAAAAAGCTTACTTTCTGAAGGTATTGTGCAAGAGAGGAAAAGGGGAGTCCTGCAAGGGACAGGATCCTGTTCGATGAAGGAAACTGTTTCTCCTTCCTGTTTTGATAAGAGGGTTCCTTGTTCAGTTAGAGGTAATGAATTTTCAGCTCTAGCTTCTGAGTCCAAGAACATGGAAACTGAAAAAGGCAGAGCTTCTCGGGGTGATAGGTTGTCAGAGCAGGGGCTCTTTTCATGTGTCACTTGTGGGATATTGTGCTTTGCTTGTGTTGCTATAGTTCAACCAACAGATGCAGCTGCAACTTACCTGATAACAGCTGACAGGAGCGAATTTAAGGACTGGGGAGAAACCAGTGATGTCTCAACTGTTGTTAATGGAGATGAAGTTCTGCCTAAGTCAGATTCTTGTTCAGGATGGATGTACAAAAGGAACCCAGATGAACTCTTTGATGTCCCAGTGCAATCTGGTGGTCTGTATCAGTCAGTCGATGATGAAATTGTTGGACTGATTCCAAATACAGAAGCACAAAAGGACACTTCATCCCTTGGTCTATTGGCTTTGACATATGGTAATTCTTCTGACTCAGATGAGGATGATGTTGATGCGAATAATCATACTGAAGCCTGCCAGAACGAAGCTAAGGATTGCTCGCCAGAAAGTGGATTGTATTGTCATGATGCTGGACTTCACAAAGGAGGATCCAGAAACGATGTTTTCTCCTGTTCAGAGTTTAGTTGTGCAGATGTGGTTCCTCTCCAAATTATTGGCTCTTCTGACAAACAAGGAACTACAAAATCTACATCTGAGAGTAGGCGACATCCACCTCCGGATGGGACTATTGAGTACAAGAGACGAAGTTTTCCATTGATGGAGATAGATAATTTAGCAGATAGGTGTAGACATCAAGTCAAAGAACAAGATGCCTCATCTCCTTCCCCATTAGCCCATAAGGCTGAGACTATAGCATCCACTGCCATAGTAGAGTTTGAGAACAAAACTTTGCCATTTGCTGGAAGACCTGATGAAGATTCTTCAAGAATGCATGTATTCTGTCTTCAGCATGCTGTACAGGTAGAAAAGCAGCTTCGGTCTATTGGTGGGGTTAATGTTTTGCTCCTTTGTCATCCAGACTATCCCAATGTAGAGGCTCAAGCGAAAAAGATGGCAGAAGAATTGGGGGGTCATTATGTTTGGAGTAATATCTCATTCAGGCAGGCATCAAAAGAAGATGAAGAAACTATACAAGCAGCTTTAGAAAGTCAAGAAGCAATACATGGCAATGGGGATTGGGCAGTAAAACTAGGCATTAACCTCTATTACAGTGCTAGTCTTAGTCGCTCTCCTCTCTACTCTAAGCAAATGCCATACAACCTTGTGATATACAATGCATTTGGCCGAAGTTCTCCAGTGAATAGCCCAACAAAGGATGACTCTCTTGGGAAGGGGCCAGGCAAACCAAAAAAGACTGTTGTTGCTGGGAAGTGGTGTGGAAAAATCTGGATGTCCAATCAGGTTCACCCTTTCCTTGCTGAAAGAGATGAAGAAGAACAGGAGAGAGGCATTCCTTCCTGCATGAAGGCTGATTTGAAGCCTGATAGACCTTTGGAAAGCACCCGTGTGCAGACTGGTGAAACAACTGCTAGAACTTGCAGGACTGGGAGAAAGAGAAAAGCTGCAGCAGAAATTAGGCCGGCTGTAAAAGCTAAATCTGCAAAAGTTGAAGAGCGAGATAAAGCTGCCGAAGACTCTCCAGTCAACCATTCTCAACATCAATGCAAAAGCAACCGGAGGAACACGCAAAGGAAGAAAGAGAACTTAGAGTCTAGCAACAAAGGCAACAAAGTTGTGAGGAACAGGAAACAGTTCAACTTAGAAACTGAGGAAGAGCAGGAAGGTGGGCCTAGCACACGGCTGAGGAAAAGAACTGAAAAGCCTAGTAAAGGTCAGGGAGCCAAATCTCTTGAAACCAAATCAGTAGCAAAGAAACAGCCAAATGGCTTGAAGGCAAAGAAGAGTCCTGCTGGCTCTAACAAGATGAAGGGAAAGGATGAGAAGACTGAGTATCCATGTGATATGGAAGGTTGCACCATGGGATTTGGTTCGAAGCAGGAGCTTGTATTACATAAGCGCAATATTTGCCCAGTAAAGGGCTGTGGTAAGAAGTTCTTCTCCCACAAGTACTTGGTGCAGCATCGCCGTGTTCACGTGGATGAGCGCCCGCTGAAGTGCCCCTGGAAAGGCTGCAAGATGTCATTTAAATGGGCATGGGCTAGGACGGAGCACATTAGAGTTCACACTGGTGCTCGTCCTTATGTCTGTGCTGAGCCAGGCTGTAACCAGACATTTCGATTTGTATCAGATTTTAGCCGTCACAAGAGGAAGACGGGTCATTCTTCTTCGAAGAAAGGCAGCTGA
Protein Sequence
- >GSCOC_T00042622001
MASEASSTPVASGNIEVFSWLKTLPVAPEYHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPAPHKKTAVSNLNKSLVARSGSPTFTTRQQQIGFCPRKQRPVQKPVWQSGENYTLEEFEAKAKAFERNYLKKSRKKCLIPLEIETLYWKAIVDKPFSVEYANDMPGSAFAPRRGGKEGGGEGSNVNANVTVGDTEWNMRGVSRAKGSLLTFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHTGAGKTWYGVPWDAAAAFEEVIRVHGYGGEINPLVTFSTLGEKTTVMSPEVLIDAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPGWLTVAKDAAIRRASINCPPMVSHFQLLYDLALSSCSRVPRGVRMEPRSSRLKDKKKGEGEMLVKDLFVQDVMQNNDLLYMLAEGSSVVILPQNSVVSSFSSNSKAGSQSQVQPGLFPSLGSPDLMMKTTKSLLSEGIVQERKRGVLQGTGSCSMKETVSPSCFDKRVPCSVRGNEFSALASESKNMETEKGRASRGDRLSEQGLFSCVTCGILCFACVAIVQPTDAAATYLITADRSEFKDWGETSDVSTVVNGDEVLPKSDSCSGWMYKRNPDELFDVPVQSGGLYQSVDDEIVGLIPNTEAQKDTSSLGLLALTYGNSSDSDEDDVDANNHTEACQNEAKDCSPESGLYCHDAGLHKGGSRNDVFSCSEFSCADVVPLQIIGSSDKQGTTKSTSESRRHPPPDGTIEYKRRSFPLMEIDNLADRCRHQVKEQDASSPSPLAHKAETIASTAIVEFENKTLPFAGRPDEDSSRMHVFCLQHAVQVEKQLRSIGGVNVLLLCHPDYPNVEAQAKKMAEELGGHYVWSNISFRQASKEDEETIQAALESQEAIHGNGDWAVKLGINLYYSASLSRSPLYSKQMPYNLVIYNAFGRSSPVNSPTKDDSLGKGPGKPKKTVVAGKWCGKIWMSNQVHPFLAERDEEEQERGIPSCMKADLKPDRPLESTRVQTGETTARTCRTGRKRKAAAEIRPAVKAKSAKVEERDKAAEDSPVNHSQHQCKSNRRNTQRKKENLESSNKGNKVVRNRKQFNLETEEEQEGGPSTRLRKRTEKPSKGQGAKSLETKSVAKKQPNGLKAKKSPAGSNKMKGKDEKTEYPCDMEGCTMGFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHVDERPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCNQTFRFVSDFSRHKRKTGHSSSKKGS