Information report for GQ55_1G393900
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Oryza sativa: LOC_Os02g51880
- Setaria italica: SETIT_016290mg
- Setaria viridis: SEVIR_1G332000v2
- Triticum aestivum: TraesCS6A02G318300
- Zea mays: GRMZM2G059958
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A2T7FCA1
- EMBL: CM009749
- AlphaFoldDB: A0A2T7FCA1
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A2T7FCA1
- STRING: 1504633.A0A2T7FCA1
Sequences
CDS Sequence
- >GQ55_1G393900
ATGGAGGAAGGCAGCGACGTGCAACCGCCGCCCCCACCCCACGCCGAAGCCGCGGAGCAGCCACCCCCCGTCCCAATGGACCAGGACGAGGGCCGGGAAGCAGCCGCAGAACCCATGGAGGACGGAGAAACCGCCGCCGCAGATGCGTCCGAGGCCGCGGATCCCATGGAGGACGGGGAAACGGCAGGGGACTCCGCGGCGGCCGCGGAGCCCATGGAGGACGACGCGCCCACGTCCTCCCCGACCCCGTCGGCGCCGTCCGCCACCGCGGCCGTCGACGACTCCACCATCGCGCGGAAGCGGCGCCGCCGGAAGAAGCAGTTCCCCGGTATGATTCCCACGGCCGGCGTCCGCGTCCTCCGTGGATCCTCCTCCTCCTCCGCCCACACCGCGGCGCATCTGACCGGCGTCCCGCGTCGCCGGGGGCGGCCCCCGACCTCCTCCTCCCTCCGCCTCGCCCGGGAGCTCGACTCCGAGGCCCTCATCGCTCTCGCCGCGGGGTTCCCCGCGGACTCCCTCTCCGAGGACGAGATCGTTGCCGCCGTGCTCCCACGCATTGGCGGCGCCGAGCAGGCCAACTACCTCGTCGTTCGCAACCACATCGTCGCGCTCTGGCGCTCTAATCCCCTTTCCCCAGTCGCACCCAACGCCGCGCTTGCTTCTATTCGCGCTGAGCACGCGCTCCTTGTTGCCGCGGCGCATTCCTTCCTGTCCGAGCACGCGTACATCAATTTCGGGCTTGCCCCCGCCGTCCTCTCGCTCCCCCCACGGTCTCCTCCCTCCTTTCCTCCCCCATCTGTCCTCATTATTGGCGCTGGCCTTGCTGGTCTGGGTGCGGCACGCCACCTTATAGCACTAGGCTTCAAGGTGGCCATCATCGAAGGTCGACTCCGACCTGGTGGCCGTGTGTTTACCAAGACAATGCGTTCATCTGCTGCAGAGTATCCTGACACAGTTGCTGCTGCTGACCTTGGAGGCAGCGTGCTCACCGGTATCAATGGGAATCCCCTTGGTGTCATCGCACGGCAGCTTGGATTCCCGCTCCACAAAGTGCGGGACAAATGCCCACTGTATCTTCCAGATGGCCGCCCAGTTGACCCCGACATGGATGCTCGAGTTGAGGCTGCATTTAACCAGCTTCTGGACAAGGTTTGCCAGTTGAGGCAGGTGATTGCAGATGGTGTGCCACATGGTGTTGATTTGTCACTGGGCATGGCACTTGAGGCATTCCGAGCAGCGCATGGTGTTGCAGCTGAGCATGAAGAAAGGATGCTTCTGGACTGGCATCTGGCGAACCTGGAGTATGCTAATGCTGCCCCTCTTGCTGATCTCTCCATGGCCTTCTGGGACCAGGATGATCCATATGAAATGGGCGGAGACCACTGCTTTATTCCTGGTGGAAACTCTCAGTTTGTCCGTGCACTTGCTGATGGCATCCCGATATTCTATGGACAGAATGTGCGAAGGGTACAGTATGGGCGTGATGGTGTGATGGTGCACACTGATAAGCAGTCGTTTCGTGGTGATATGGTTCTCTGTACAGTTCCTCTTGGCGTGCTCAAGAAGGGTGACATCAAGTTTGTGCCTGAGCTACCAGCTCAGAAAAAAGAGGCCATCCAGAGATTGGGTTTTGGTCTGCTTAACAAGGTTGTGATGCTGTTCCCATATGATTTCTGGGATGGTAGGATTGATACATTTGGTCACTTGACAGAAGACTCTTGTCAGCGTGGCGAGTTCTTCCTGTTCTACAGCTATTCTTCTGTCTCAGGAGGGCCATTGCTCATTGCCCTTGTTGCTGGGGAATCTGCAGTCAAGTTTGAGGAGGCTTCACCAATGGAAAATGTTGAGAAGGTGCTGGAAACACTTAGGAAAATCTTTTCTCCCAAGGGGATTGAAATTCCAAACCCATTGCAAGCAATATGCACCCGATGGGGTACCGACAGGTTTACTTATGGATCATACTCATATGTTGCTATTGGCGCTTCTGGTGATGACTATGACATTTTGGCTGAGAGTGTGCATGATAGAGTTTTCTTTGCTGGGGAGGCAACAAATAGGCGGTACCCCGCTACAATGCATGGAGCCCTGCTTAGTGGGTATAGGGAGGCTGCTAACATTTTAAGAGCAGCTAGAAGGAGAGCTAAAAAAGTGGACTCGCCTGAGAAAATGGATATTAATATTGAAGTAAAAGTGGATGTCAACGGTGAAGTCAAAGACAATGTTAAAGATAGCAACATTGGTTTGGATGATCTCTTCCGTTCTCCTGATGATGCATTTGGGGGTTTCTCAGTTCTCCATGATCCATCTACCTCGGAACCCGATTCAATTTCCTTGCTGCGTGTTGGAATTGGTGCTAGAAAGCTAGGTTCTGGTTCACTTTTCCTCTATGGATTGATAATGAGAAAGAATGTACCTGTGCTGGCTGCAATTGAGGGTGATGAACAACGGTTGAGTACAATGTACCGAGATTTTGGGACAAAACTTGTGGGATTGGATAGCTTGGGTGATGCTGGGGAAAGCCTTATCTCTCGGATAAAGGCTGCTTATAGGAAATAA
Protein Sequence
- >GQ55_1G393900
MEEGSDVQPPPPPHAEAAEQPPPVPMDQDEGREAAAEPMEDGETAAADASEAADPMEDGETAGDSAAAAEPMEDDAPTSSPTPSAPSATAAVDDSTIARKRRRRKKQFPGMIPTAGVRVLRGSSSSSAHTAAHLTGVPRRRGRPPTSSSLRLARELDSEALIALAAGFPADSLSEDEIVAAVLPRIGGAEQANYLVVRNHIVALWRSNPLSPVAPNAALASIRAEHALLVAAAHSFLSEHAYINFGLAPAVLSLPPRSPPSFPPPSVLIIGAGLAGLGAARHLIALGFKVAIIEGRLRPGGRVFTKTMRSSAAEYPDTVAAADLGGSVLTGINGNPLGVIARQLGFPLHKVRDKCPLYLPDGRPVDPDMDARVEAAFNQLLDKVCQLRQVIADGVPHGVDLSLGMALEAFRAAHGVAAEHEERMLLDWHLANLEYANAAPLADLSMAFWDQDDPYEMGGDHCFIPGGNSQFVRALADGIPIFYGQNVRRVQYGRDGVMVHTDKQSFRGDMVLCTVPLGVLKKGDIKFVPELPAQKKEAIQRLGFGLLNKVVMLFPYDFWDGRIDTFGHLTEDSCQRGEFFLFYSYSSVSGGPLLIALVAGESAVKFEEASPMENVEKVLETLRKIFSPKGIEIPNPLQAICTRWGTDRFTYGSYSYVAIGASGDDYDILAESVHDRVFFAGEATNRRYPATMHGALLSGYREAANILRAARRRAKKVDSPEKMDINIEVKVDVNGEVKDNVKDSNIGLDDLFRSPDDAFGGFSVLHDPSTSEPDSISLLRVGIGARKLGSGSLFLYGLIMRKNVPVLAAIEGDEQRLSTMYRDFGTKLVGLDSLGDAGESLISRIKAAYRK