Information report for Gohir.D11G042400
Gene Details
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Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Actinidia chinensis: CEY00_Acc17948
- Citrullus lanatus: Cla97C06G128240
- Cucumis melo: MELO3C026154
- Cucumis sativus: CsGy1G000010
- Glycine max: Glyma.06G162500, Glyma.04G203000
- Juglans regia: Jr02_00090, Jr09_00040
- Manihot esculenta: MANES_14G043200, MANES_06G128300
- Populus trichocarpa: POPTR_015G109300v3, POPTR_012G111200v3
- Prunus persica: PRUPE_5G139000
- Vitis vinifera: VIT_00s0283g00020
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: A0A1U8K3M6
- RefSeq: XP_016695588.1
- AlphaFoldDB: A0A1U8K3M6
- KEGG: ghi:107912058
- OMA: CLMAPKM
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF2
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- OrthoDB: A0A1U8K3M6
- SMR: A0A1U8K3M6
- CDD: cd20443
- STRING: 3635.A0A1U8K3M6
Sequences
CDS Sequence
- >Gohir.D11G042400
ATGTCGGCTTCAACTGCTAGTGGCACGGGATGGTACAAAGGGAGAGTCAAAGCAGTTCCATCGGGGGATAGCTTGGTGATAATGGCCTTGACCAGTAACAGGCCTGGACCTCCACCTGAGAAAACCATTACCTTGGCTTCTCTCATTGCTCCTAGACTGGCCCGAAGAGGAGGTGTTGATGAGCCATTTGCCTGGGACAGCAGAGAGTATTTGAGGAAGCTCTGCATTGGAAAGGAAGTCACTTTTAGAGTCGAATATGCAGTACCAAGCATAGGCCGAGAATTTGGGTCTGTCTACCTTGGTGGTGACAAAAATGTTGCAATGTTGGTTGTCTCTGAAGGCTGGGCTAAGGTTAGGGAGCAAGGACAGCAGAAAGGGGAAGCAAGTCCTTTTCTTGCTGAATTGCTACGTCTTGAAGAACAGGCCAAACAACAAGGTGTGGGTCGATGGAGCAAGGTACCTGGTGCTGCTGAGGCTTCTATACGTAATTTACCTCCTTCTGCCATTGGTGACCCAAGTAACTTGGATGCCATGGGTCTTCTGGCTGCAAATAAGGGCAGTCCAATGCAAGGTATTGTTGAGCAGGTTCGCGATGGTAGTACTGTTCGAGTCTATTTGCTTCCAGATTTTCAGTTTGTGCAGGTCTTTGTTGCTGGTATCCAGGCCCCTTCAATGGGTAGAAGGGCTGCTGCCGAAACTGTTGTTGAAACAGATTTGACTTCTGATGAACAAAATGGAGATGCTTCAGCTGAGCCACGGGCTGCCTTAACATCAGCACAGAGGCTTGCTGCATCATCGACAGCTTCTTCTGAAGTTTCTCCTGATCCGTTTGGACCAGAAGCAAAATATTTTACAGAAGTTCGCTGTTTGAATAGAGAGGTTCGTATTGTCCTCGAAGGTGTAGACAAATTCAGCAATTTGATTGGGTCGGTTTATTATCCTGAAGGTGATACGGCAAAAGACCTCGCTTTGGAGCTTGTGGAAAATGGTCTAGCAAAATATGTTGAATGGAGTGCTAATATGATGGAGGATGATACCAAGCGGCGGTTGAAGTCTGCAGAGCTTCAAGCCAAGAAGGCTCGGCTGAGGATGTGGGCAAACTATGTACCGCCAGCTACAAATTCCAAGGCAATTCGTGATCAAAACTTCACAGGAAAGGTTGTGGAGGTTGTTAGTGGGGACTGTATTGTTGTGGCTGATGATTCTATCCCTTATGGCAGTCCTCTTGCTGAGCGCCGAGTCAATCTTTCAAGCATTAGATGTCCAAAAATGGGCAATCCTCGAAGAGATGAAAAGCCAACTGCCTATGCCCGTGAAGCAAGGGAATTTTTAAGAACACGCCTTGTAGGAAAACAGGTGAGTGTACAAATGGAATATTCCAGGAAAGTCCCCATGGCAGATGGAGCTCCTGCTGCATCTGCAGATTCAAGGGTAATGGATTTTGGCTCAGTCTTCCTCCTGTCTCCCATCAAGGGTGACGGTGATGAGGTTTCTGCAGCAAACGCATCTGCAGCTGGCAGCCAGCAGCCTGGCCTGAATGTGGCCGAGTTGGTTGTTGGACGTGGCTTTGGCACTGTGATAAGACATAGAGATTTTGAGGAAAGATCAAACTATTATGATGCCCTTCTGGCTGCTGAATCCCGTGCTATTTCTGGGAAGAAGGGAATTCATTCTGCGAAGGATCCTCCAGTCATGCACATTCAAGACCTTACAATGGCATCAGCCAAGAAAGCTAGGGATTTCCTGCCATTCCTGAATCGTGGCAGGATTCCAGCTATTGTGGAATATGTCCTAAGTGGTCATCGTTTCAAGTTGTTGATCCCAAAGGAAACTTGTAGCATTGCCTTTTCATTTTCTGGTGTCAGATGTCCTGGTCGCGAGGAGCCCTACTCAGATGAAGCCATAGCTCTGATGAGACGAAAGATCATGCAGAGAGATGTGGTGGTTGAAGTGGAAACTGTCGATAGAACTGGAACATTTTTGGGATCTTTGTGGGAGTCAAAAACCAATGTGGCTGTGACGCTTCTTGAGGCTGGCCTGGCTAAGCTACAAACTTCATTTGGTAGTGATAGGATTCCTGATGCTCATCTTCTTGAACAGGCTGAGCTATCTGCCAAGAGGAAGAAGCTGAAAATTTGGGAGAGTTATGTTGAAGGAGAGGAAGTTTCCAATGGACCTGCCACTGTTGAAAACAAGCAAAAAGAACTGCTACAGGTGGTGGTTACAGAAATATTGGGTGGCGGAAAATTTTATGTCCAGACAGTGGGAGATCAGAGAGTATCAGCTATCCAAAAACAGCTTGCATCTTTAACTATCCAAGAAGCTCCTGTGATTGGTGCCTTTAACCCTAAGAAGGGTGACATCGTCCTTGCTCAGTTTAGTATGGATAATTCCTGGAATCGTGCAATGATTGTCAATGCACCTCGAGGAGGAGTTCAATCTCCTAATGACAACTTTGAAGTGTTTTATATTGATTACGGGAATCAAGAGGAGGTTCCATACAGTCAATTACGACCTCTTGATCCTTCATTATCAGCGTCTCCTGGGCTTGCTCAGCTATGTAGTCTTGCATTCCTTAAAGTTCCGAGCCTGGATGATGAATTCGGTACCGAAGCTGCTCAGTTTTTGAGTGAGCAGACAATGGGAAGCTCACTGCAGTTTAATGCTATGATAGAGGAAAGGGATGTTTCTGGCGGGAAAGTCAAGGGAAAAGGAACTGGCACCGTTCTCATTGTAACTCTCGTTGCTGAGAAGTCAGACCTTAGCATTAATGCTGCAATGCTCCAGGAGGGACTAGCTAGGTTGGAGAAAAGGAAGAGATGGGAATCCAAGGATAGAAAATCGGTGATTGACAATTTAGAGAACTTTCAGAAAGAGGCAAAAACTGGTAGGCGTGGAATTTGGCAATATGGAGATGTGGATTCGGATGATGATGAGGATCTCCCTACACTTGCAGCAGCTGCTGCTAAGAAGACTGGGGCTGGTCGCCGATAG
Protein Sequence
- >Gohir.D11G042400
MSASTASGTGWYKGRVKAVPSGDSLVIMALTSNRPGPPPEKTITLASLIAPRLARRGGVDEPFAWDSREYLRKLCIGKEVTFRVEYAVPSIGREFGSVYLGGDKNVAMLVVSEGWAKVREQGQQKGEASPFLAELLRLEEQAKQQGVGRWSKVPGAAEASIRNLPPSAIGDPSNLDAMGLLAANKGSPMQGIVEQVRDGSTVRVYLLPDFQFVQVFVAGIQAPSMGRRAAAETVVETDLTSDEQNGDASAEPRAALTSAQRLAASSTASSEVSPDPFGPEAKYFTEVRCLNREVRIVLEGVDKFSNLIGSVYYPEGDTAKDLALELVENGLAKYVEWSANMMEDDTKRRLKSAELQAKKARLRMWANYVPPATNSKAIRDQNFTGKVVEVVSGDCIVVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPTAYAREAREFLRTRLVGKQVSVQMEYSRKVPMADGAPAASADSRVMDFGSVFLLSPIKGDGDEVSAANASAAGSQQPGLNVAELVVGRGFGTVIRHRDFEERSNYYDALLAAESRAISGKKGIHSAKDPPVMHIQDLTMASAKKARDFLPFLNRGRIPAIVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGREEPYSDEAIALMRRKIMQRDVVVEVETVDRTGTFLGSLWESKTNVAVTLLEAGLAKLQTSFGSDRIPDAHLLEQAELSAKRKKLKIWESYVEGEEVSNGPATVENKQKELLQVVVTEILGGGKFYVQTVGDQRVSAIQKQLASLTIQEAPVIGAFNPKKGDIVLAQFSMDNSWNRAMIVNAPRGGVQSPNDNFEVFYIDYGNQEEVPYSQLRPLDPSLSASPGLAQLCSLAFLKVPSLDDEFGTEAAQFLSEQTMGSSLQFNAMIEERDVSGGKVKGKGTGTVLIVTLVAEKSDLSINAAMLQEGLARLEKRKRWESKDRKSVIDNLENFQKEAKTGRRGIWQYGDVDSDDDEDLPTLAAAAAKKTGAGRR*