Information report for gene-LSAT_5X63700
Gene Details
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Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Gossypium hirsutum: Gohir.A08G223200, Gohir.D08G243400
- Juglans regia: Jr13_27780, Jr13_27790, Jr16_02560
- Manihot esculenta: MANES_09G124300
- Musa acuminata: Ma04_g12340
- Nicotiana attenuata: A4A49_21987
- Populus trichocarpa: POPTR_013G081300v3
- Prunus persica: PRUPE_2G324300
- Sesamum indicum: SIN_1013829, SIN_1026218
- Solanum lycopersicum: Solyc08g076030.3
- Vitis vinifera: VIT_16s0039g02410
Gene Resources
- Pfam: PF00400
Sequences
CDS Sequence
- >gene-LSAT_5X63700
ATGTCATCCTTAAGTCGGGAATTAGTTTTCCTAATCCTGCAATTCCTGGATGAGGAAAAGTTTAAAGAAACTGTCCACAAGTTGGAACAAGAATCTGCTTTTTTCTTCAATATGAAATATTTTGAGGAACAAGTTCAAGCTGGTGAATGGGATGAGGTTGAGAAATATCTATGTGGGTTTACAAAGGTTGAAGATAATCGTTACTCAATGAAGATATTCTTTGAAATAAGGAAACAAAAGTACCTTGAAGCTCTTGATAGGCAAGAGCCTAATATTTATTATATTTATATCTCACACCATTTTACTCTTTTTATTGACATTTTAGTTGCTAATATCAGGAATGACAGAGCAAAAGCTGTTGAAATTCTTGTAAAAGATTTGAAGGTCTTTTCGACTTTTAATGAAGAGCTCTTCAAAGAGATCACACAGCTACTAACTCTTGATAATTTTAGGCAGAATGAGCAGCTTTCAAAGTATGGGGATACCAAATCAGCAAGAAGCATTATGTTGGTTGAACTGAAAAAGCTTATAGAAGCAAATCCTTTGTTTAGAGAGAAGCTAACTCTTCCTGTATTTAAAGCTTCAAGATTGCGTACATTGATAAATCAAAGTCTTAATTGGCAACATCAACTTTGCAAGAATCCACGCCCTAATCCTGATATCAAAACTCTTTTTATCGATCACACATGTGCTTCCAACAATGGAGGTAGAGCACCTCCCCCTACCAACAGTTCTCTTTCTGGACCTGTTCCTAAAGCTGGAGTATTTCCTCCAATTGGAGCACATGGTCCTTTTCAGCCTATTGTTTCTCCTTCTGCTGGATGGATGGCAACTGCTAATCTTTCCATGCCTCAACCTGGACCTCCTGGCCTTGTGCAGCAGCAGCAGCCTCCAGTTACAGCTGCATTCCTGAAGCATCCACGGACTCCTCCAGGTGGTGGTCCTGGATTGGAATATCAAATGGCTGAATCTGAACACTTAATGAAACGTGCACGTGTGGGCCCATCTGATGAGGTGTCCTTTTCTGGTTCAACTCATCCTCCGAATTCATACTCACTGGATGATCTTCCAAAAACTGTGGTTAGGTTACTTAACCAGGGTTCAAATGTCATGTCAATGGACTTCCATCCTCAACAACAAACTATTCTCTTAGCTGGAACAAATGTTGGTGAAATAAGCATTTGGGAGATTGGAACTCGAGAAAGAATGGTACATAAACCCTTCAAGGTTTGGGATTTATCTGCTTGTTCAATGCCTTTTCAGACAACTTTGGTAAAGGATGCAGCAGTATCTGTTAACCGTTGCATATGGGGACCAGATGGATCAATACTCGGTGTTGCCTTTTCCAAGCACATTGTTCAGATATATACATATAACCAATCAGGGGAATTAAGACAACATTTGGAAATAGATGCCCATGTTGGTGGTGTAAATGATATTGCTTTTGCTCAACCCAATAAGCAAATGTGTATTGTCACATGTGGCGATGACAAGACAATTAAGGTATGGGATGCTGTTGGTGGAAGGAGGTTATATATGTTTGAAGGTCATGAGGCTCCTGTTTATTCTTTTATATTCTCAACAGCAATTGATGGGAAAATCAAAGCATGGCTGTATGATTGTTTGGGGTCAAGGGTAGATTATGATGCCCCTGGTCTTTGGTGCACAACAATGGCATACAGCACTGATGGAACCAGATTGTTTTCTTGTGGAACAAGTAAAGAAGGTGAAGCCCATTTAGTTGAGTGGAATGAGAGTGAAGGAGCCATCAAGAGGGAATATTCTGGTTTCAAAAAGCGTTCTATGGGAGTTGTACAATTTGACACAACAAAAAACCGTTTTCTAGCTGCTGGAGATGAGTTTCAGATTAAGTTTTGGGACATGGATAATAATGATATGCTAACAGCCACTGGTCCAAATAATGGATTACCTGCAAGGCCTAGATTAAGATTTAACAAGGAAGGGTCATTACTGGCAGTGTCGACAAGTGACAATGGATTTATAATATTGGCAAATAATGATGGGCAGCGCATGGTAAGGATGCTGGAGAGTCAAGCGTATGAGCGGACCCGGGCACTTTCTGATTCAGTCAAACCTTCAATCACTGGCCCATTAGGTCCGATCCCTAACGCGTCATCATCTATGGTAACTGCTATAGAACGTGATAGAATGCAAACTCCATTATCCATTGGAAATCTTGCTAATGCTGAAAGCAGTAAAGTTGTGGATATTAAACCAAGAATTGTGGAGGGTGCTGACAAACCTACAAGCTGGAAGCTCCCTGATATAGTTGATTCTTCTCACCTTAAAGCCCTAAGGTTACCCGATCCAACAGCTGCCAGCAAGGTTATGAGGCTGATCTATACAAATTCTGGGTTATCTTTGCTTGCACTTGCTTCAAATGCCATTCATAAGCTCTGGAAATGGCAACGAAGTGAACGCAATCCATCTGGGAAGTCGACTGCATCTATTGTCCCACAACTATGGCAACCAACAAATGGAGCTCTCATGTCCAATGATGTGAATGAGAGTAAATCTGCTGAAGAGTCTGCAGCATGCATTGCTTTGTCAAAGAATGATTCTTATGTCATGTCTGCCTCTGGTGGGAAAGTCTCCCTTTTCAACATGATGACTTTTAAGGTCATGACAACTTTCATGCCCCCACCACCTGCTGCCACCTACTTGGCTTTTCATCCTCAAGACAACAATATCATTGCTATAGGAATGGAGGATTCCACCATTCAAATTTACAATGTTAGAGTTGATGAGGTCAAAATGAAGCTGAAAGGTCACCAGAAACCAATTACAGGACTTGCTTTTTCACAGACTTTAAATGCACTCCTATGTATCTGGAATATTAATGGATGGGAGAAGAGGAAATCAAGAAACATACAGTCGCCACCTGGCCATCCCTCCTCACTCGTTGGAGAAACCAAAGTTCAGTTCCATAATGATCAACGCCATCTCCTTGTTATACATGAAAGCCAAATCGCTATTTATGATCACCAACTCGAATGCTTGAAATTGTGGTCTCCAAGAGAATCTCTTTCTGCTGCAATTTCAAGTGCAATATATTCATGCGATGGGATGCTATTATACACTGGATTTTCCGATGGTGCTGTTGGAGTTTTTGATGCAGACAATTTAAGGCTTCGATGTCGTATAGCACCTTCCGCCTACATATCCTCTTCAATTTCCAGCAATAGCACGGCGTATCCAGCAGTGATTGCATCACATCCGTCGGATCCAAACCAATTTGCTCTGGGAATGAGCGATGGATCTGTCCACGTCATCGAGCCAGCCGATGCTGATCCAAAGTGGGGTGGATCAACATCTCAGGATAATAATGCGGCTTTACCTTTACCATTACCATCTTCTAACCCTTCAAATTCTGCTTTGAATAGTCAACCATCAGAAACACCCTCCAGATAA
Protein Sequence
- >gene-LSAT_5X63700
MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFFFNMKYFEEQVQAGEWDEVEKYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQEPNIYYIYISHHFTLFIDILVANIRNDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARSIMLVELKKLIEANPLFREKLTLPVFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCASNNGGRAPPPTNSSLSGPVPKAGVFPPIGAHGPFQPIVSPSAGWMATANLSMPQPGPPGLVQQQQPPVTAAFLKHPRTPPGGGPGLEYQMAESEHLMKRARVGPSDEVSFSGSTHPPNSYSLDDLPKTVVRLLNQGSNVMSMDFHPQQQTILLAGTNVGEISIWEIGTRERMVHKPFKVWDLSACSMPFQTTLVKDAAVSVNRCIWGPDGSILGVAFSKHIVQIYTYNQSGELRQHLEIDAHVGGVNDIAFAQPNKQMCIVTCGDDKTIKVWDAVGGRRLYMFEGHEAPVYSFIFSTAIDGKIKAWLYDCLGSRVDYDAPGLWCTTMAYSTDGTRLFSCGTSKEGEAHLVEWNESEGAIKREYSGFKKRSMGVVQFDTTKNRFLAAGDEFQIKFWDMDNNDMLTATGPNNGLPARPRLRFNKEGSLLAVSTSDNGFIILANNDGQRMVRMLESQAYERTRALSDSVKPSITGPLGPIPNASSSMVTAIERDRMQTPLSIGNLANAESSKVVDIKPRIVEGADKPTSWKLPDIVDSSHLKALRLPDPTAASKVMRLIYTNSGLSLLALASNAIHKLWKWQRSERNPSGKSTASIVPQLWQPTNGALMSNDVNESKSAEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKMKLKGHQKPITGLAFSQTLNALLCIWNINGWEKRKSRNIQSPPGHPSSLVGETKVQFHNDQRHLLVIHESQIAIYDHQLECLKLWSPRESLSAAISSAIYSCDGMLLYTGFSDGAVGVFDADNLRLRCRIAPSAYISSSISSNSTAYPAVIASHPSDPNQFALGMSDGSVHVIEPADADPKWGGSTSQDNNAALPLPLPSSNPSNSALNSQPSETPSR