Information report for g27030
Gene Details
Functional Annotation
- Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.
- encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.
- Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.
Homologous
- Brassica napus: BnaC06G0319800ZS, BnaA07G0279500ZS, BnaC08G0427300ZS, BnaA09G0575900ZS
- Brassica oleracea: Bo6g098830, Bo8g099280
- Brassica rapa: Bra004082, Bra007810
- Citrullus lanatus: Cla97C11G206990
- Gossypium hirsutum: Gohir.A12G268100, Gohir.D12G268500, Gohir.D11G003600, Gohir.A11G004100, Gohir.A09G174100
- Manihot esculenta: MANES_14G168600
- Prunus persica: PRUPE_5G140900
Sequences
gDNA Sequence
- >g27030
AGAGAACGCACTTTTTAGTACCTGATGGTACTATCAAACCAACCAATTCGAGTTATCAAACCTAATAAACCAGAAAATCCAAAATAAGAGAAAAATATTTAAACCAGAGAACCATAGTTTAAGAACTTAGTTGTAGTAAAATCCAAAATAACACATCAGGTACGGAGCTTTTTTTGCTAAAGAGTTCTTTGGTACCAAAACAAAACCATAGTCTCCAACTTTACCTGATGGTTCCGTCCAAAAAAAAAAGCCATTGGAAAGGCTCCAATCTACTTGCTTCATGCCAGATTACACAACAGTCGCAGAATCTGCTGCGGTGGTGTCCAACTTAATCCGTTTCTTCGGTTGCTCAGCATCTTCAGACTCGGCCAGAGTTTCTTCTTCAGCGTTGGTACCTGAGCCTTCGCCTTCATTTACAGTCTCTGCATTGTCCTCTTCCTGATTCTTCAGCCTCTCTATGACGTCCATGACTTCTCTATTGACCTGTTTACACATTTCTCCAAAAAGATTAGTCCTCAATTTCTGTGATCATAATAATGGTAAACATTGTATGATTAGATTTGCTACAGTTTCATTTTTCATGAATGGAAAGCATTAAATAAGTGAATGACATACTAAAAATCCACTCAAACTTATAGATTATATAACAAATAAACCTGTTCCTACACAATCACATTACAAAATGAATAATCTATAGACGGTCTGTAAGTAACTGATAATGCTTGCAGATTACGAACAAGAAATAAACATATTACCATTGAACCAACTTCATCTAATTCCAACAGAGTCAAAATAAATGCTAATGTAATTTACACTTGTATTCATATAATATGATATGAAAGAAGAAGATAAGCTGATATTTCACCTGAGGGTTCTGGAGAAAATCGGAAATGTCAGTAGGGCAAGAAGGACAGTTCATCACATTCTTCTGTGCTCGTAGAGTTCGTCCACCTCTGCTTCTCTCTCTCACTAGCGTTTTGCCAGCAAATTTGGCTTCTAAGCATGCCTTGCAGAAGTTATGAGCACACGGCGTTGTCACTGGAAGAGTCAGCACTTCCCGACAGATCTGGCACTTAAATTCTGCATCAACAAAAAATCCAATGACAGTTTAGATGGATTTGGAAACAAAGCTATATAAAGAAAGAGTTGGATATTTGGGGTTCATATTAATAGTTATGAGAACCATTTTGGAAACATTGACTTCCTGATTCTAAAAGTTCTCAGGGAATCTTTAGCTTGAGTCTCATTTCAAGAAAAGGTAACCTTGAATTGTTTGAAAGGCAGTCTTAGAAATATAAACATAATGCACAAAGATCTCATTCAGCAAAAAGGGAAAAAACTTTTTAATATTATAACAGCAGAGGTAGAGAATTTGGACACAGACCTTTGAGAAGTTTTGCCCTCATGGTATTCGAGTGTGCTGCTTTTATGGCTTTCCTCAAAGTTTTCCTCTCCTCAGGATCCAAAACATTCACTGACTTTTTACTAGCAGGTGGCGGCTTCATCCATCTCCAAGAACCCTCACCTTCCTGGTCAAGTAGGCCTATGTTATCAGTGGGTACAGATAAAGAACTGTTACAAGAGAGATGTCTTGGAACTTACATCAAAATCCCATGATGGACTTTCTTTTCTCTCAAACAGTTCTGTGGCCATATTCAGCTCTGGAATATTAGGCAAAGGTCTTGGGCGATCTCCATGCTCATCACTGCAATATATCACATCATTAAACTCAAATGGTATGTATACAGAAAAGGCGCAGCTTTCAAGAAGTAGATCAAACCTAGTCCATGGAGCTGGCTCATTGTCACATCTAACAAACAGGTAACGACAGACCTTGAAAGAACCCTATGGAACACAGAAGAATAGGTCAATGCATAAAAAGAACAGTGACATAAAACAGTTGATAGATATGTGTACCTGTATACCAACTTTCCGCCAGCACTTCTCGATCCGGTACACCCCATCATATCTCACTCCCTCCTCAGGGGCATATGCAGAACGCTTCTCCTTGTGAGACCTGATCATATGTGAAAAAGGTAGTTAAAGAGTTAGGATCAACAAGCTTTAATGCAATGGAGTTATGCTCGAATAACAGCTAACCTGACAACTCGAACAGGATACCCCAGTTTGCAGCTAAGTCTTAAGGCTTCATTAGACTTTTCAAATTTTTGATCAAAGGACTGCTCCTTATTAGTCCTTTTGTTGCCACTGAGATCTCTTCCCCCACTGTGCGACACATTCAAGACAAAAAGAAACAAAATCAATCAGAAATTAGAAGAATAGCAAATGTGATTAATATAACACATGAGAGAAGTAAAATATACCAAATGTGATTAATATAACAATCGAGTCATTAGAATAAACCAAATGAACCATAAGCTAGAAGAAATGAAAAGCAGACCTTCCTGTGTATAGAAACCATTCTCCATGATCCTCATCATCCTCATAACCTCCAGAGAGTGCTACAGATTGAGCTCCATAATTTGATTGTCCAGCAATGCCAGCAACATGTGGGAAGTGAGCGCCCCACTGCCTACACTCGAGTCGGTCCTCCCAGGATTCTCCAACCAAAAGACCTTGGTTCCTGACAGGATCATTTTCAGCTGGTATAGGACCAAAGTGATCTGGTGGTATTGTAACATAAATCCTTCCACTAGCAGCGTTCGCCTTTCCCGTTTTCTTTGCACGCTCAGTTGTAAATGCTTTATCTGGTCGGTCTTGATTGCTTATGAAATGAAAGACCTTTGAAGTACCCGCAGCAGCACTTTTAGATACTTTCGCTAATCTAATAGCAGACACAAGGGACGAGTTGATACGGGGATTCTTAGCCATTTTCTCCGGAATTACGCTTCGGCATTTACCACAAGTTCGCTTCCCCTGCCCCATCCACTTCTCAAAACATTTCAAGCAAGCGTTGTGCCCACATGGTTTCTGAAAAAAGAAACATACAAGATATCCATCAGCCCTAGCCTTCATTTTTGTCAAAAAAAGGACTTATTCTGTAAAGAAGAAGTCAACACTTATAACGTCTTGCCACTCCTACCATACACAGTTCAGACCATATTGAATACTCATCAAAAGCAAAAGTTTAGAGTTTTTCTTTTGACAAGAACACCAAGACAAGCATCCCATAAACGGCAACTAAACAACAATCTATAGAAAAGTTCAACCATCAACAAATTTTCAACAACACAGTAAATTACTCCAACTAAATAATCCAACCCAAAAGGGTAAATAACAGGATAACTTAATAAGTATATAGAGACAGTTTGTCAAAAGGATCGATTAATTGAGTCAATAAAGTCTATGCCTTTATATCACGCAGCTTAATTTTGGTATGTCACAATCATTAACCAATAATGTAATTCAACATTTAAGCAGAAACACTAAACAGATTCACCAAAAGAAGTATCAAAACAGGTCAAATAATCCAGAGATAACACATTAGATACTCTAATTTAACAAGCATCAGAGCCAGGACAGATTCACCAAAAATGGTATAAGAAAACACACTAGATACACTAGATTAACAAGCACCAGAGCCAAGACAAAGAGAACGAACCGTCACAGGTCTCTCAGGCAATTGCATACAGAAAGAACACATCAAGTTATCTCCAAGAGCTGATAAAACATCGAGATTCGAATTCTTCCCTTTACTCTTCTTCTCTTCTTCGTCATCCTCAACGACGCCTTTACCACTTAACAACCGTTGCCTCTTCTTAGCTTTCTCTTCAGTACTCAACGACTCATCAGCCTCAATCGCGCGAATCGCCGCTACAAGATCTGAACCAACAGATCCATAACCAGAAACGTCGCCGGAAACAGGAAGAGGATCGATTTCGCCGGAGCAATCAGGACAATGCCACTGTAAAGTAGAAGCTAGGGTTTCGGGTGGGGTTGAGAGACAGGACACGTGCCACGGCGTAACGCACGTGCCGCAAGTGAGAGATTCTTCAGGCGGAGGTTTGGATTTGCATCGCATGCATACACCGTCGCCGTCGCAGGGGAGTTGGATGTCACGCGCCATTTTTGGGGGAAATAGATGTGAGAGAGAGAATGGTTTGTTTTCGAGATTGTGAGAGATATGGGAGAGAGGAAGGTTCTAGAGAATTG
CDS Sequence
- >LR48_Vigan02g270300
ATGGCGCGTGACATCCAACTCCCCTGCGACGGCGACGGTGTATGCATGCGATGCAAATCCAAACCTCCGCCTGAAGAATCTCTCACTTGCGGCACGTGCGTTACGCCGTGGCACGTGTCCTGTCTCTCAACCCCACCCGAAACCCTAGCTTCTACTTTACAGTGGCATTGTCCTGATTGCTCCGGCGAAATCGATCCTCTTCCTGTTTCCGGCGACGTTTCTGGTTATGGATCTGTTGGTTCAGATCTTGTAGCGGCGATTCGCGCGATTGAGGCTGATGAGTCGTTGAGTACTGAAGAGAAAGCTAAGAAGAGGCAACGGTTGTTAAGTGGTAAAGGCGTCGTTGAGGATGACGAAGAAGAGAAGAAGAGTAAAGGGAAGAATTCGAATCTCGATGTTTTATCAGCTCTTGGAGATAACTTGATGTGTTCTTTCTGTATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAACGCTTGCTTGAAATGTTTTGAGAAGTGGATGGGGCAGGGGAAGCGAACTTGTGGTAAATGCCGAAGCGTAATTCCGGAGAAAATGGCTAAGAATCCCCGTATCAACTCGTCCCTTGTGTCTGCTATTAGATTAGCGAAAGTATCTAAAAGTGCTGCTGCGGGTACTTCAAAGGTCTTTCATTTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCGTGCAAAGAAAACGGGAAAGGCGAACGCTGCTAGTGGAAGGATTTATGTTACAATACCACCAGATCACTTTGGTCCTATACCAGCTGAAAATGATCCTGTCAGGAACCAAGGTCTTTTGGTTGGAGAATCCTGGGAGGACCGACTCGAGTGTAGGCAGTGGGGCGCTCACTTCCCACATGTTGCTGGCATTGCTGGACAATCAAATTATGGAGCTCAATCTGTAGCACTCTCTGGAGGTTATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCTCAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAAAAGTCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGTACCGGATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGGTTCTTTCAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACTAGTGATGAGCATGGAGATCGCCCAAGACCTTTGCCTAATATTCCAGAGCTGAATATGGCCACAGAACTGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTCTTGGAGATGGATGAAGCCGCCACCTGCTAGTAAAAAGTCAGTGAATGTTTTGGATCCTGAGGAGAGGAAAACTTTGAGGAAAGCCATAAAAGCAGCACACTCGAATACCATGAGGGCAAAACTTCTCAAAGAATTTAAGTGCCAGATCTGTCGGGAAGTGCTGACTCTTCCAGTGACAACGCCGTGTGCTCATAACTTCTGCAAGGCATGCTTAGAAGCCAAATTTGCTGGCAAAACGCTAGTGAGAGAGAGAAGCAGAGGTGGACGAACTCTACGAGCACAGAAGAATGTGATGAACTGTCCTTCTTGCCCTACTGACATTTCCGATTTTCTCCAGAACCCTCAGGTCAATAGAGAAGTCATGGACGTCATAGAGAGGCTGAAGAATCAGGAAGAGGACAATGCAGAGACTGTAAATGAAGGCGAAGGCTCAGGTACCAACGCTGAAGAAGAAACTCTGGCCGAGTCTGAAGATGCTGAGCAACCGAAGAAACGGATTAAGTTGGACACCACCGCAGCAGATTCTGCGACTGTTGTGTAA
Protein Sequence
- >LR48_Vigan02g270300
MARDIQLPCDGDGVCMRCKSKPPPEESLTCGTCVTPWHVSCLSTPPETLASTLQWHCPDCSGEIDPLPVSGDVSGYGSVGSDLVAAIRAIEADESLSTEEKAKKRQRLLSGKGVVEDDEEEKKSKGKNSNLDVLSALGDNLMCSFCMQLPERPVTKPCGHNACLKCFEKWMGQGKRTCGKCRSVIPEKMAKNPRINSSLVSAIRLAKVSKSAAAGTSKVFHFISNQDRPDKAFTTERAKKTGKANAASGRIYVTIPPDHFGPIPAENDPVRNQGLLVGESWEDRLECRQWGAHFPHVAGIAGQSNYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNEALRLSCKLGYPVRVVRSHKEKRSAYAPEEGVRYDGVYRIEKCWRKVGIQGSFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPNIPELNMATELFERKESPSWDFDEGEGSWRWMKPPPASKKSVNVLDPEERKTLRKAIKAAHSNTMRAKLLKEFKCQICREVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSRGGRTLRAQKNVMNCPSCPTDISDFLQNPQVNREVMDVIERLKNQEEDNAETVNEGEGSGTNAEEETLAESEDAEQPKKRIKLDTTAADSATVV