g13930

Gene Details

Gene ID: g13930
Suggest Gene Name: JASMONATE-ZIM-DOMAIN PROTEIN 1,MULTICOPY SUPRESSOR OF IRA1
Description: putative flowering gene
Species: Arabidopsis halleri
Source: Putative flowering gene from PlantCFG

Functional Annotation

JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.
Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.

Homologous

Gene Resources

Sequences

gDNA Sequence

>BRADI_1g13930v3
CTATAAGATATCATTTATATTTGATACTATTGTTCTTCTTACAAAATCAGTTACATACATAACTAATTTTGAGATAACCCAAAGCAAGGGGATTTAGAAAGGCGACAATACCTAGTAAAACAACAAACTAAGACGAATACTAACAAGAATTGATCACTAATCAAATACATACAAATATATGAAGTTTCTTAATCATTGAGTAGTTGTAACAATATAACAAGCTTAAATCAAGAAGCATGAAGATATATAGGAGCTTTTATATCTTGTATTGAAGCAACGTCAAAAGAATTGTCCCGTACGGCTTGAGGATGGTCTAGCGGTTAGCGTTCATATTTCAGCTGCCAAACCGAGCCACGACATGTTGTCTGCGGTTTGAGGCTTTGAAGACGCTTTGGCTGGATCGCATAACTGGTATGGTGCCTTTGACGTAACCCTGTCCTTTCTCTTCTCCAAGAACCGGTGAAGTGAAGCTCTTCTAGCAATAGGAAGTTCTGTCAATGGTGTTGGGGAGGATTGGATTGGCTCTTGTGTTGTGGTTTTTCTTGGATGAGGAACTTGGTTTGTGATAGTAGCGATGTTGCTTCTGATCTCGGTTTGATTCTTGGCTAAGTTGACATTAGATGTGAAACCGGTGAAGCTATTAGCGGTGCCTTTGCTAGCCAAGTTCATCACTTCTTTGACTTTTTCAGCAGAGAAGTCATTGAATACAATCACTTGCCCGGCGTAGAATATAGTCAATGGTGCAGTTTGAGACTCTGGTTTCACAGATCTGGTAGTCTGTGTCATTTTCAGAACATCTTCCTTTAGAACAGAGGAAGATGAGGAAGAAAAACTTAGTTGCCGTGGAAACAAATTCGTCGGTTTAACATCTTGAGCTGGTGCTACCATGGAATCCATGTTTGAAGCTTCACAAGGGAATAAACTCATCGTTGTTGTCGGCTGACGTGAGTTGCCAAACGTTCCTGCAAATACATGATCCAAAAGTAAGAACTCTCTCCCATAATTTTCTTTGAATCGATTTCGCAATTCTTTTCAATTTTCTTCAAGATCAAAATTCAAGAATTCGAAATCAGAGAAAACGTTTAAAAAAAAGCTGGATCTAGGACAAAGAGAAGGTTTCTTACCATTGACATCAGGCTTGCATGCCATGCCTAAGCTCAGATCTCCAAAGCTACCGTTCTCCTTCAGGTACTGACTCAATCGACTACACGTTTGTGAGAAGCTCGGCTTCCCAGTAAATCTCCGACTAGCGACGAACTCAGAGCATTCCATAGAACTCGACATCTTTAACAAATAAAACTTTGAAAACAAGTTTCTCGAATATATAGCTAAATCGATCCAAGAAATCTCCAATCTTTCTTCTTCAGATTAAGGTTTAGGTTTTTCTTCTTATTGATGTTGTTGCTTCTCTGCAAATTGCGTTTGTCACGAGGGAGAAATGGAGGGTCTCTTTAAAGCTTTTTGGGTTGGTTTTGGTTTGGTTGCAGAGTTCTTCCTTCCTACCTCCAATATAACAAAACTACATATTAATAAATTAATAAATACTACTATACTTTACTAATCGTATTAAAAACACGTGTTTTATTTATTTTTGTTTTAATAAAATCGGGAAATGTGTCTCGGTTCACTGTTCTCCACGTTCAACGCTTTCCGTTTATTTTCAGATTACGATTTTATCCACGAGCCTATTGGTTGTTTGTTGGTAGGACGAAAGTCAAATAAAACACAAGATGCATGTAAAGAGATGTTAGATTTTATCTTTAATCTTTATTTATTAGTAACGTAAATTAGTTGTAGGCATAATTCTCGTCGTGATGATTTTGGTGCTGATTATTTTTTTTATTTTTTTGGGTTTCCGATATGTTAACAAGAAAATCAACCAAACACGTCCAAAATTACTTAATTTTCCTAATTTAGAAAATCACATATAAGAGTGAAATATACTATATATAATATAAAAAAAAAACGAAGCAAAACGCGTAAGAATCAGTCAACAGTCAAGCCTAATCTCTTAAATGCTCTTCATCGAGACTAAATAATCTTATAATCAAAATTAAAATCTATATGATATTTTATACTCGAAGGATTTTAAAACTTATTACTAGTATTATAAAGTATATTAACGCGTGATTCATGCAGAGAGACAAGCGAAGGTTTGTCTAAAACCTAGAAAATAATAAATAAAAATATAAAGTCTGCTAGTTGTCGAGTTGGAATAAAAATGAGGCCCAAGCTAATAGTCATACATCAAAGTCAACCCACATGTCGACCGTCAGAATTGATAAAATGCCATGAACTTCAATCAATATTACAAACTGGGACATAATCAAAAGGACACAATATTTAACATATCCGAAAGCAAATGACTAATCCATATGTGAAGGGTATTATCGTCAACTAAGAAAGTAAACGGCGTTAGTTAACTGTGAGTGGTCCCCAATTTAGGACAGCTCCACCATCCACATGTTCCGTCGATCACGTTTTTGTTGTTATGCGTTTTTTGAATAATATCAATATTTAAAGAAAAAAGAAGCAAAAGAAGAAGGAAACCACAAGGAAAGGAGGTTGGCAAGTGCACGTTGTCTGTACCTGTTTTATATGACACGTGTTTAGTTATGGTTGGTCTGTTTTTCTACGCGTGTAGATTCTTCTTGTATTTCAGTATCCGGGGCT

CDS Sequence

>BRADI_1g13930v3
ATGTCGAGTTCTATGGAATGCTCTGAGTTCGTCGCTAGTCGGAGATTTACTGGGAAGCCGAGCTTCTCACAAACGTGTAGTCGATTGAGTCAGTACCTGAAGGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGCATGGCATGCAAGCCTGATGTCAATGGAACGTTTGGCAACTCACGTCAGCCGACAACAACGATGAGTTTATTCCCTTGTGAAGCTTCAAACATGGATTCCATGGTAGCACCAGCTCAAGATGTTAAACCGACGAATTTGTTTCCACGGCAACTAAGTTTTTCTTCCTCATCTTCCTCTGTTCTAAAGGAAGATGTTCTGAAAATGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCTACGCCGGGCAAGTGATTGTATTCAATGACTTCTCTGCTGAAAAAGTCAAAGAAGTGATGAACTTGGCTAGCAAAGGCACCGCTAATAGCTTCACCGGTTTCACATCTAATGTCAACTTAGCCAAGAATCAAACCGAGATCAGAAGCAACATCGCTACTATCACAAACCAAGTTCCTCATCCAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTCCTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGGGTTACGTCAAAGGCACCATACCAGTTATGCGATCCAGCCAAAGCGTCTTCAAAGCCTCAAACCGCAGACAACATGTCGTGGCTCGGTTTGGCAGCTGAAATATGA

Protein Sequence

>BRADI_1g13930v3
MSSSMECSEFVASRRFTGKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTFGNSRQPTTTMSLFPCEASNMDSMVAPAQDVKPTNLFPRQLSFSSSSSSVLKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKVKEVMNLASKGTANSFTGFTSNVNLAKNQTEIRSNIATITNQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSKPQTADNMSWLGLAAEI