Information report for g12317
Gene Details
Functional Annotation
- RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.
Homologous
- Actinidia chinensis: CEY00_Acc26765
- Brassica napus: BnaC03G0546700ZS, BnaA06G0283600ZS, BnaC09G0076100ZS
- Brassica oleracea: Bo3g104750, Bo9g017510
- Brassica rapa: Bra038607, Bra035858
- Capsicum annuum: T459_32871
- Gossypium hirsutum: Gohir.A03G061700, Gohir.D03G104300
- Populus trichocarpa: POPTR_015G082500v3
- Solanum lycopersicum: Solyc06g071680.3
- Solanum tuberosum: PGSC0003DMG400026989
Gene Resources
- Pfam: PF00850
Sequences
gDNA Sequence
- >g12317
AAGAAAAAAAAAGTTTCTTTGCATTTTTCACATCTTCTGATTTTCTAACTTGAGCCAAAATACTACTAGTCAGTTGTCACCGTTCTAATCAATGCAGCGTTTTCACAGAACTCAAAAGGTTGCTGAAAAAAACATGAAAGAATCATCATTCCCCTAACTTGTGTCTTAAATCTGCCGACATTACCATATGGCAAAAGACCCACCAACCATCAAGCTGGTTTAAGACGATGGGGGATTCACGTCTGGCTCTGGGTTATCGTCTTCCATTTCATCTTCACCTGTAGAGTCCCTGTAGATTTTAAGAGATATCATCAATTAATTTCTTAATCTCCTGTTAAGAATTTAAAAAATGAGGATCAATTTAATCCCTGAAGAGTTTTTATTACCTGTCCATAATTGCGCCACCACGACTTGAGTAACCATGAAGAGGTTTATCATCATCGTCACTGTCTGATTCATAAGTCACAGTTCCACTCCAAATGCGAGGCTTTGGTCTTTGCTCCATGTCTTCTTCCGGCTACGGATTTAAGATAACAGATCTACTGAGTTGGTTTTCAATAAGACATAACGCAACTAAAACAGTAAAGAGAGAGATGTACATCAATGAATGAGTAAAAAAATTACCTCGTCCAAAACTCGATTGACTGGTGGTGTGTGCTGAAACTGGACGCTAGGTGCGTGTATTAGTCCCGAAAGTTGTTCCAGCAATGTGTTCCTGAAATTTCAAAAAGTAACTTTCTCTAAGTTCAAAGTATCCCATTGACAAGGCCAAGGAGGCTCAGTAGCTAAAAGCTCAACCATGAAAAGCTTTCGTGAACTATTTGGAACTGGCACAAAGAAAAATTCTTATGTTACATATAGAATTACAATCTTGAGCATCATTAGCATCTTAAAATTAGGTGGACTAGGTAGAAGTTCAGTGGCAGCCGAAGTACAATGACCATAAAAAGGGAAAGTAGGAGATATTACCTTATCTTCTCCATATCTTTTGGCGTGTTTAAATTCTCCATTGGACCTGGGTCGACATGAAGCGTATAATCTGGGCCGAAATACTCAAAATACTCATTGTAAGGGAGTTTGTTGTCTGGCTCTACTCCAACAGCAACTGCAGTCTGCGACGAGGCAACAGAAACAAACACTTTCAAGAACAAAAACCTATATGATTATCAAAAAGTATAGAAGAACTGCAAAAGAGATGGAAAAGACCTCATAACACCAGCAACGAGCAACATTTCGAATAGTATACCCTCCACCACCCAAGACCATGAGAGGAACGTTGTAAGATCTTAAGAACCGAAGGCAATCAGCGTGACCCTTGACTGATAAGTTGAAGCAACCCAACCGATCACCACTTAACGAGTCAGCCCCACATTGAAGAACAACTGCCTCTGGCTGATACACTTCCATAACCTTCTGGATAAGAGGTCTAAACAAGCTGCGGAAACGTTCATCGTCCATACCATCGTTTAGCGGACAATTTAGAGCATAGTATTTCCCTTTTTCTGCGCCAACATCTCTTATGTGACCAGTTCCGGGGAAAAAGTCCCCAAATTTGTGGAAAGAAACAGTCATAACTCTATCAGTGGTGTAAAACGCTTCTTCCACTCCATCTCCATGGTGGACATCGATATCTATGTAGAGAACCCGCTGCAAACAAAATTTGACGAAAGCATTAAGACGTAAGCAATGGAAACATCGTTCCACACTCAATCAACATTTTGAATGATGCTATCAGAATACAATAACAAAGCAACGGAATCCAAACTAGAGAAACTTAAAGAATCAGATGATGGAAACAAAGAGGCAATGTAGAAAACCATTCTCAAACAAATCAACATCCTTATCAGAATTTCTAATAAACAACACAGATTATAAGTTGCAGCTGCGTTTCTCAGAAACACCTGATGCATTTGACCTAATATAATAATGGAAGATTCTAAAGATAATCACACAAAGCTTCAAGGTTTCAGGTAAATTTTAGAAAAACCACTCAATAAGATAAGCTTAAACCCTAAAATTTTCAGAAGAACAATTATGAAGAGCTAATAGATGAGACCATAAGAAGGAATCGAGCATTTACCTTAAACATCTTGAGCAACTCGAGAATCCCTAAAACGATATCATTTACATAGCAAAACCCAGAGGCCTCGCTTTTCTTAGCATGGTGAAGGCCACCGCCCCAATTGATAGCGATATCAGCGTCCTGTCTGTTTAATTTGACGGCAGCACCAATAGAACCTCCGGCGGAAGCACGGCAAAAATCAAAAAGTCCGTCGAAGACAGGACAATCCTCACCGACATTGAATCGCCTTAGGTTTCGTGCAGAGGAAGGATCGCCCATAGATTCCGGCGAAACGGAAGCGAGGAAATCAACATACTCCGGCGAATGAAACCGGCCGATATCGGAGGCGTCAGCGAGGTTAGGGCGACTGATTTCTAAGCGACGGTGGAGGTGATAGTGAATGATTAGGCTATGAGCCATACGGATCCGGTGAGGTTTCATCGGATGTCCTTGACCGTAGTAGTAGTCTCCGATCGTCGGCTCGTAGAAGTAACTGACTCGCCGCTTACGTCCGTCGGGTCCCGACGGCAGAGAGATGCCGCTTTCGTCTGCCTCCATCTTCGTCTCTCTCTCTCTCTCTCTCACTCAGAGTCTCTGTCTCTCTCTATCCCCAAGTTTTTTACTCCGAGCAAAATTTGTGTCTACTATGCCTGAGAAAA
CDS Sequence
- >g12317
ATGGAGGCAGACGAAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCTACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAACCTCACCGGATCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTCGCCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTTGATTTCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTGCACGAAACCTAAGGCGATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATGTAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACATAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCCGGAACTGGTCACATAAGAGATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATTGTCCGCTAAACGATGGTATGGACGATGAACGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTTGCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACGTTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGTGTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGTATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAGGTCCAATGGAGAATTTAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGACTAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACGAGCCGGAAGAAGACATGGAGCAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACTTATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAAGTCGTGGTGGCGCAATTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCAGACGTGAATCCCCCATCGTCTTAA
Protein Sequence
- >g12317
MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPNLADASDIGRFHSPEYVDFLASVSPESMGDPSSARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNCPLNDGMDDERFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPGPMENLNTPKDMEKIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEEDMEQRPKPRIWSGTVTYESDSDDDDKPLHGYSSRGGAIMDRDSTGEDEMEDDNPEPDVNPPSS