Information report for g07460
Gene Details
Functional Annotation
- Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.
- Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.
- Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
Homologous
- Arabidopsis thaliana: AT5G65070.2, AT5G65070.1, AT5G65070.3, AT5G65080.1, AT1G77080.5, AT1G77080.4
- Brassica napus: BnaC02G0546300ZS, BnaA02G0411200ZS, GSBRNA2T00047451001
- Brassica oleracea: XP_013628773.1
- Brassica rapa: XP_009130489.1, Bra031884
Sequences
gDNA Sequence
- >g07460
ACAACATCACAACTTTATTAGTTTTTTTCTAAAACATCCTCATCACAAATTTGGGTTATTCAGCCAGGGGGAAGGTCGATGACATATCTAGAGAGCTTAACTTTGTCTAGTGATCTTCAGACTCAAGAGAGTTTAAGAGGATTCAAGAATCAGCATAGCTTGAGATGGCGAATAAAAACCAAAAATACTAACCTTCTCTTGAAGGGTCTTCACAAACTCCATCGTGAGTTCTGCCTGTCACAAGACATTAATAGTTATGCATGTCAAACAGGGGAAATGATCTGAAGTGCAAAGTCCAAACACTGTTCTTGGACCAAATATTGTTGAATAGACGGCTGAATAACTTAGTAGCAGCATATATATACCTTCCTAGCTCTAGTTATAGACAGAGCAGTCTTGAGCTGCTCTTCCAGGGACTTTAGACAATCTATACTTACATTATCGCTTTTCGTTTCTTCAATCTTGCTGCATATATATTCATAGATAAACGACAGACAAGAAAAACAACTTCTATAATCAGAGGAAGAGGGGGAAAAAGGAGTCTTAGTGCTAACCATTGGATTATTTCTAGCAACTCCTTGTGTGAAAGATAATTAAGATTTTTTTCTTCTAGATCCTGCCATGAAAGAAAGATTTTAAATTTCTTTTGTTTCCAGGAGACAGATGATTATAACCATCGCTAATTAAGTTTGGTATAGACAAGTTTAAAACCTTGCTGTTGACTTTCTAGTGCATCACCGGCAGTGAAGAACAAAGTACTTGAACTTCTATGCCGATCTCTCTCCACAATCTTAAGACACTAGTACACTACACAAATGGAACTATTCTAGCTAAGCTTCTAAATGCTCATCTCAGTTACATATGCCTTGGAAGACTTTGAGAGGGATGGGTGTATATATGGATGACAAGAGATGTTTCTAATATTCGAGAACTAAAGATAGGGTTAGACGACTAAGTTTGGAATACTACAAGTTCAGAACCATGTCGTAGACTTTCTAGTGCAATACCAGCTGTGAAGAACAGAGTATCTCTATGCTGGTCTTTATCCACAATGTTAAGGCACTACAAAAAGTATCAACATAATAACCATCTCAATGGACTATAAGCTATCTTCTAAATGCTCATCTCGATTACCTAAGCATGCGATCGGATATGCAAGTATCTAAGAAAAACTTACCAAGGTTTTAAGATCATCAGCCTGTTGTAATTCATAACGACTGAGGATCTTGGCCATGCTGGAGAGATCAAGAGAGAAACAAAAAGCCATTAGAGAGACTTTTTTGAAACTTCGAAACAAATATAATTAACATCAATAGAGAGACTCTTAGAGAAAAAGGAAGGATCTATATATATACATGTTATTTATAGATAGCCTTAATTCATGTTATAGCATCAATTTGGGTTAATTAACCTTGCTCTAAGACTTGTTTATAGAAATGTTAGTGTATATAACTTAAAAATAAAACAAGGTTTGTTAACTAATAGTGTTTTTGTACTTTTCCTACGATAAACTTATATTTTGTGATCGATTTCTTTAGTTTTAATATTCAGTACACAATGTTTTCTTTCATTTAATAATGTCAATGCATATAATATGGGTAAATTTTACTACGTAAAGAGTAAACCTGAAACGCTAATGCTGTAAATTTTGTTGCAATAACTACCAAGTCCATCTTCAATTTTGTAGTGGCTAAATTGTTTTGAACTTAGAAAGGTTTTTGGATATATATGCACAATTTCTTCCAATGAGTAACAAATTACCTCTTTCTTGTCAAAAGCTAAATCAATGATCTAACTTTTGTTATTTTATCAATCTAACAGCAGACAGCAAAAGTATGATTGGATGGATACATTGAATAGCATATTTCCCCTGTGATAAAATCTTGATAAATACATGTTCGTAAGTGAAAATCTCTATACGTTTGTAAAAGTTGCCAAATTTATATATCAAAAGCTCGAAATTCCGTCCACATAGTATTGAAGCTCTCACACAATCATCTCAAGTGGAAATTTTGAAAACAAAATTGGCTATATGCCCATATACATAAGATTTTGAGATACTCTTTACACAATACATCAAAAATGGGGTTTAGCATTTTAGGGAAGGTTACAAATTGATAGTATTCAGCCCAAATCAAGTCCACAAAAGACACACCACAAAACATATAGCTTATGTGTGAATGTGCCTCAAGGTCTTAAAAGGCATTCTAGTTTGTTCTCCTCCTATCCGATTTGAGATTTCTTATCGATAACTATGTTTCTTTTCACAAATTCATTCCTACTTTGTGTCGTATGTGATCTATATTGCAAGACTTCAATTTAAACAGTGAATTTAATTGACTTGAGCTGTGATCTAACATTATGCAATTAGTGAGGCACATAGGATTATCCTAGAGGTCACAACTCTTATCCTATGATAGGAAGTACAATCTCAAGTGAAAAACACTTCTGTATATATAGGGCCACTAAATTAAAGTACCAGCGGAGCTACCAAGAAACTAGCTACAACTAAGAATTTTGACTATTTTAATAAATTAAAGCAAAAAAAGAAAGAAAGAAGTTCCATCAGTTCTAAGATCCTATCAATAGTTCGTTTTAGTTATTGGGAGGTTGTTAACTTGGGTTCTTAGTAATTTTTAGTATTAAAATTGTAAAAGTTTTAGTTAATACTTAAGATTTATCTCTTACAAACATTTTTTGGCTCTTAGGTAAGAAACCTTTCTTACCTTTCTTACCAATAATAACCATTTGCCATTTAATTAAATACTTTTTAATACTTAAGATTTACTTAAGATTCTTCTAAGAGCCTATTGATAATCATGGTCTTAGTTGCCAAATTATCATGTACTTTCATGATCAAGCATTTGTGATATTATTATGAGGGAAATTATAAAAAGCTTTATAAACATTTATATTTCTATTTCTACAAGGTCTCAATTCCGTTCATTTTAGTCACATAGCAATGGTTAGAAAGTGAAAAAGATTAAAATGTATCGTACCGAGTGATTGTAGAGACTCAGTTTCTCTGGCCCATGAGATCCAATTAATAACTCAACAAGAAAAGAGTTAAAAATGCATTACAAAAGAGAAGGGAATAGTTCTAGAAGAAAAAGAAAGAGCTACACAATGTGTATACATGCATCTTCAAGTTGTTATAGGCACACAAAAATTACAAGTATAGAGGGAGAAAATGGCTTGTAACCGGGTGGTATATACTAGTGTCACCGTTGTGTCATAACTCACATTCAAAATGTGCATGTATGAATCTTAAATGAACAAAAGAGAGAAAATCGATATCCGTTCAAAGGAGTAATGCAGTATGTGTGGATAGTGTTAATTTGAGTCTTTTTATAGTTATCCAAACACTATATTTGACCATCAAAATCAGCTAGAAACCTTTTACTTAAGCCAAAAATCAATAAAAAGAGAACTAATAAATAAATCATCTACAATATACTTGCAATCAACCAGAAATTGCAATGTGGCATCCCTTTCATTCTAGAGACCTTTGATAAGTTTCTCAACAAATCTACCGAAGGTGGATTTAGTTGAGTAAAAAAGTGGATAATGAGCCTAAATTAATCTCAAAAGTAAACAAATGTACTTATATTTCTTCTATGACTCTACAACAGAATAAGTTACACAAAAATTAAGATGGCTTGAAATCCCAATAGACAAACATAAAGTACGGATTACAACGTGTAGAAAGATCTCTCCAAATGCATGCAATATACTGTATATTCTCACCAAAAAAAAGTATAAAAGGAAAATCAAATCCCTGCAACAATAGAAAATGATAAAACACAAAACAAACACCAAGTGTATATCTTTGGCCACCACATTGTTTAATCTTAAATTTGGTTAAACCTATACATCGATTACGAAGATGAACAAAACACGAAGATCAGCTTTAAAGATTCAAAGGGGCAAAAGAAAAAACCCTAGTTCTTTAGTTTATATTTTCGTCGGGAATCTAACAAAAGAGAGACTTTATAATAGGAAATAATGGTGTTACCTATCGCCAGAGGAGAAGCTGTAGAGTCTTTCGGTGGCAGAGATGATGATAAGAGCGACGGAGGATTCACAAAGAATTGAGAGTTGACGAGCTTTCTCCATGAGACCATTTCGTCGTTTACAGAAAGTAACTTGTCGAGAGCTTTTGTTCTCAATTCGTTTGATCTCCACTTTTCTTCTTCCCATGGCTTCTTTCTCCGACAACTCTTCT
CDS Sequence
- >VIT_18s0001g07460
ATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAACCTTGTGCCTTAACATTGTGGATAAAGACCAGCATAGAGATACTCTGTTCTTCACAGCTGGTATTGCACTAGAAAGTCTACGACATGGTTCTGAACTTGTAGATCTAGAAGAAAAAAATCTTAATTATCTTTCACACAAGGAGTTGCTAGAAATAATCCAATGCAAGATTGAAGAAACGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAAGAGCAGCTCAAGACTGCTCTGTCTATAACTAGAGCTAGGAAGGCAGAACTCACGATGGAGTTTGTGAAGACCCTTCAAGAGAAGGTTAGTATTTTTGGTTTTTATTCGCCATCTCAAGCTATGCTGATTCTTGAATCCTCTTAA
Protein Sequence
- >VIT_18s0001g07460
MAKILSRYELQQADDLKTLCLNIVDKDQHRDTLFFTAGIALESLRHGSELVDLEEKNLNYLSHKELLEIIQCKIEETKSDNVSIDCLKSLEEQLKTALSITRARKAELTMEFVKTLQEKVSIFGFYSPSQAMLILESS