Information report for g06218
Gene Details
Functional Annotation
- Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.
- RNA binding protein which cotranscriptional splicing of a key floral repressor gene FLOWERING LOCUS C (FLC), , facilitates R-loop formation near FLC intron I to repress its transcription, thereby promoting the floral transition. inhibition of cotranscriptional splicing of FLC by nuclear HRLP condensates constitutes the molecular basis for down-regulation of FLC transcript levels.
Homologous
- Actinidia chinensis: CEY00_Acc05725
- Arabidopsis thaliana: AT3G04680
- Brassica napus: BnaA03G0295700ZS, BnaC03G0354200ZS
- Brassica oleracea: Bo3g058530
- Brassica rapa: Bra001118
- Glycine max: Glyma.20G242900
- Gossypium hirsutum: Gohir.D04G050600, Gohir.A05G364100
- Juglans regia: Jr10_02550, Jr01_00620
- Manihot esculenta: MANES_17G021000
- Nicotiana attenuata: A4A49_22719
- Populus trichocarpa: POPTR_017G077200v3
- Vitis vinifera: VIT_14s0066g02630
Sequences
gDNA Sequence
- >g06218
AGAAAAAATCAACATTATTTTATCATTTTTTGCCCCACTTCATAACGTCAAATTACAAAAGAAAACCCATCTAGTGTACAACAATAATCTTTTAAACTCAAAAACTAAAAGATAACCTAAAGCATTTTATAAATAAAAAGGCTATTTGTAATTAAAATTACATAATCGAGCTGCTGCATCATTCTCCAAGCAAAAAGCATGCCTCCTCTCTTCTCTAAATAAATCATACTGACTCAAGCCATGTCAATGATCCAGCGACCAACAACTTGCTAGGTAATGTCCCAGGCGATGGTGCTAAATACGTTATCTTCTTCTTCTGCACATTAACTTCCGTCACATACACAAACCCAGAAACATTGCTGCATCAAGAAAAGAATAAACAGAGAAAATATCAAAAACACGAAGACAACAATCACGAAAGCCTTTGTTTCTGGAAACAGCAAGAACTTTTAAAGATTACCTTGAGATGATCTGGTCTGGTTCTTCTGCGTACGAGACAGCGAGAACAGAATGCAGCAGATCCCGATCATCGATATTTACAGGCGTCACCCGCAATGGATTTGAAACCGAGGTAGACCCGGCTGGAAGAGCTGACTTTGGCGCTTGTGGTCCACCACCAATTCGGAACACTTGCAGATCACTGAAACTTGATGTATTGGCATACGGAGATAGTTCTTTCGATAAACCGTAAAAATATTCCTGGAAATACAGTTTTCGAGTTCTGAGTTACACCTCCAAAGGCATGAAAAAGGGATATCAAAATATTTGAGATTGAAAATTTTACCTGAATCTTAAAATTCCTCGATCTTTTACGGACCTCTTTGACCCTGGCTACAACTCCACCAGACTTGTGAAGTTTCACGACGTCGACATTACTCTTACTTCTCAGCACATCTTTAAGCCTGCTGAAGAGTTTTTCCTGACCCAATACAAGTACAACCGAGGCATTGAATGTGTCTATTGCGTGGAGAAGCAGCTGCAAGACGACACAGATACAGTTCTTTAACAAGCGTTTGCATAATGAAATCCACTAAAAAGGAGCTAAATTTACCAGAAAATACGCTAAAAAGGATCTAACTTTTTACCTCATAACCAATACCCTCGATCCATCCCATTGTGTTGATCACCATTCCAGCAGCTCGAGATTCAGGGTTTCCGACAAACTGTCTCTCCAGAACTTGAGCCAGCTCTTTCACCAGAGCTTTGTACAGTTCAACGTTGATACTGAGAGAGCCACAATAGACAGTTTTTAAATTCCTCATCGAGGAAAATAACGTATGATGGGAAGGAGAAATTTGAAAATCACTTACTTTGGTGATGCATGGCCGCAGTAGTACACAAGGGCCATATCAAGAGGAAACCCTTCAACTGGATCCAGTGGCATTTCAATAGGGGCAGCAGCAATACATCCTGGTATTGTAATCGAGCCTTGGCCAACATCAAGGTCTACAAATGTAGGTCTCCATCCCTGTTTAGCTGCCCAACTAAGAAGCATCTTTGTCAATGTGCTCTTCCCGGAATCCGTAGGCCCTACTACAATAACCCGAGGTCCCTGCTTTAAGTGAAATCTTAAGAACCAAGTGTTTTAACTTTGCTGATATCGAAATACAATAACAATGAATATCGAAGAAAAGTACCTGAGAAGATTCTGGATCATTGGATGTGGAAGCTTTGGCAAAACGTCTCCTTGCATCTAGTATGGCATGCACATTAATGTAGCTGACCATCGGTGTCTAGAAACCGAGACATAGTTAGAAAACACACTTTTCTCTAAGTATCTAAAGCAAGCGTAAGAATGAAACAAGTAACCCAACCTCATCTGCCGTATAGTCAGTTTCCGTGACACCATCCATCTCAATTGTCGCTCCATACCAAGTGAAAACCTAACAATAATCAAAAGGCACAAGATAGTAAGCACGGTGTTTCAGAGCTCCGATCTTGAACTATACATAAATCATTAGGAGAAGGAAAAAAACAGAAAGAAATTGAGAAAAAAATCACATTTATCATCAATCTTTATACAACCGCTTAACAATTCTTACATAGTCAGCATAATCTGCATTTACAACGTAAATCTCAAGTCTTTCATCCAACTCAAACCCAAAAACCATCAAACTTCACAGGTAAAGGATGTACCTTTCCAACTCCAAAAGGCCAGAGGGTGAATTCAATAGCAACTCAAGAACCCACTTCAAGAAAGATAACCCACAAACAGAAACTAAATCAAGAAAGGCTCGTTGTTTTCTACCAACAAACCCAACACCACATATGTTACCAACAAGCTCATTTAATCTATTCGCCGTAAGCATAATGCTTAAAATTGCTCTAAAACACCACGATTGTATTATAGGTACAGAACACATACCGCAAATTTCATGCGAGGAGGGAACGTACGCCATATTTCAGGAGGCAGTTCAGAGCCAAAAATCTCAGCCGTTCCGTTCACGACACGGAGTCTGAGAGGCTCTTCAGAGACTTCGATCCTGAGCTCGCTTTCTCTCTCCAATTTCACTTGCTTCAGATTAGCAGACCCGGAAACTGGGCCACTCAAAGCCGGTGGATTCATTGACGGACCACCGTAAGCCATTGCTTTCACTCGGAGTAAGATATAACTGTAGACTATCACACGGAGTAATAGGAGCTCTCTTTAGTCATTACACTTGCCCTTGTAAATTGCTCTTCTTCTTCAACCTATGACAAAAGTATAATCAAGATTATCGCTTCAAGGATTTGGAAGAGTGTAAAAAAGAAAACAGTGAAGAAAGATGCAGACTTTACCAGATTTTAACACACCCAATCTTGACCCCGGAAGGAATCATAAAGCGCAACAGAGATCAATTTCAAACAACCAATGTATCAAAATTCATCATTAGAGAGCGCTATAGAACTAAAGAAAGTATCTAAAAACGAGAGCCATCGATTTCCGTACCCAGAAATCGAAAAAGAGAGAACGAGAGAGTGAAAAAAGACGAATTACCAAAAAGGGTCAATGGAGAGAAGACTGAAGGCGACAAAGATTGAACGGCGAGACAAATTACGATTCTACGGCGAGGAGAGAAGGA
CDS Sequence
- >Solyc10g062180.2
ATGGCTTACGGTGGTCCGTCAATGAATCCACCGGCTTTGAGTGGCCCAGTTTCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGCTCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTCGTGAACGGAACGGCTGAGATTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACGTTCCCTCCTCGCATGAAATTTGCGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACGGCAGATGAGACACCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGAGACGTTTTGCCAAAGCTTCCACATCCAATGATCCAGAATCTTCTCAGGGACCTCGGGTTATTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTTCTTAGTTGGGCAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTACAATACCAGGATGTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTGTACTACTGCGGCCATGCATCACCAAATATCAACGTTGAACTGTACAAAGCTCTGGTGAAAGAGCTGGCTCAAGTTCTGGAGAGACAGTTTGTCGGAAACCCTGAATCTCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGTATTGGTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGGGTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACGTCGTGAAACTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGATCGAGGAATTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTATCTCCGTATGCCAATACATCAAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGCCAAAGTCAGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCATTGCGGGTGACGCCTGTAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTCGCTGTCTCGTACGCAGAAGAACCAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGCAGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGGTCGCTGGATCATTGACATGGCTTGAGTCAGTATGA
Protein Sequence
- >Solyc10g062180.2
MAYGGPSMNPPALSGPVSGSANLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGCIAAAPIEMPLDPVEGFPLDMALVYYCGHASPNINVELYKALVKELAQVLERQFVGNPESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSLTWLESV