Information report for g04140
Gene Details
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Functional Annotation
- Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.;Encodes a vernalisation insensitive 3‐like protein, a possible component of the PRC2 complex mediating H3K27me3 in target genes
- Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.
- Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
- Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
- Encodes a positive regulator of the brassinosteroid (BR) signalling pathway that mediates both downstream BR responses and negative feedback regulation of BR biosynthesis. There is evidence for phosphorylation-dependent nucleocytoplasmic shuttling of BZR1. GSK3-like kinases (including BIN2), 14-3-3 proteins, and the phosphatase BSU1 seem to participate in this process. Phosphorylation also appears to affect BZR1’s transcriptional activities.
- Encodes a member of rice CONSTANS‐like (COL) family proteins
Homologous
- Arabidopsis thaliana — AT4G30200
- Oryza sativa — LOC_Os02g05840
Sequences
gDNA Sequence
- >BRADI_3g04140v3
TAATATACACAGAGCTAATTAACGATGGTGGTCGATGTGGAGAGCCGAGCCGTGAGCGTGCCGGGAGGGAAGATAGTGGCGCGTGCCTGCGATGCGTGCATGGAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGAAGACGCTTTCCTATGCCAAAGCTGCGACTCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCACGAACGCGTCCGGTTACAATCATCTTCGTCGACGGAGACGGCAGACAAAACGACGTCGGTATGGTACGAAGGTTTCAGGAGAAAGGCGAGAACTCCTAGGAACAAGGGTTTGGCGTTTGAGAAGTTGTTGCAGGTTGAGGAGAACGATCCTCTTGTTCCGGATCTTGGTGGAGAAGAAGAAGAAGATGGGTTTTTCTCGTTCTCTTCCGTAGAAGAAAACGACGAGAGTCTGAATTGTTGCGTGCCAGTTTTCGATCCTTTCTCAGACATGGTGATTGATGATATCAACGGCTTTTGCTTAGTTCCCGATGAAGTCAATAACACTACTACTAATGGAGAAGAACTCGAGAGGGAAGTCATGGACGATAAAGGTTTTATTGGGTTCTTGCCGTTGAATATGGATCTTGAGGATCTCACTATGGATGTGGAGAGGTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGGAACCAAACGATATTGGAGTTATCAAAGAAGAGAATAACGTAGAGTTTGAGATTAATTGTAAGGATTTGAAGAGGGTTAAAGATGAGGAAGAAGAAGAAGCCAAGTGTGAAAATGGAGTATCAAAGGATAGTGATGGAGAAGCATCTAAGGATGAAGATGGAAAGACGAGTTTGTTTCTGAGATTAGATTATGAAGCTGTGATTAGTGCTTGGGATAATCATGGTTCGCCGTGGAAAACCGGAATCAAATCGGAGTGCTTGGTAAGTTGGTATCTCTATATCTCATCTCTATTTTAGTCTTTAGTAGTGTCTAGTTCCGTTGACTTTGAGCTAATCAGATTTTGAAATACCAAATTAACGTTTAAAAATTTGTTGATCCAGTTGGGAGGGAACACGTGTCCGTCACATGCTGTAGGTGGGTTCGATGAGTTGGTGTCGCCCGTCGGATCGGTGACACGCCAGCAAGTGAGAGACGGAGGAGGATCGGACGGGGAGAGAGAGGCGAGGGTTTTGAGGTACAAGGAAAAACGGAGGACGAGGTTGTTCTCAAAGAAAATAAGATATGAGGTTCGGAAACTTAACGCCGAGCAGAGACCTCGGATCAAAGGTCGGTTCGTGAAGAGAACGTCACTTTTTACGTGATTTGATTTACTTTAATGAACACTTTAAAGAGCT
CDS Sequence
- >LR48_Vigan06g041400
ATGGTGGTCGATGTGGAGAGCCGAGCCGTGAGCGTGCCGGGAGGGAAGATAGTGGCGCGTGCCTGCGATGCGTGCATGGAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGAAGACGCTTTCCTATGCCAAAGCTGCGACTCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCACGAACGCGTCCGGTTACAATCATCTTCGTCGACGGAGACGGCAGACAAAACGACGTCGGTATGGTACGAAGGTTTCAGGAGAAAGGCGAGAACTCCTAGGAACAAGGGTTTGGCGTTTGAGAAGTTGTTGCAGGTTGAGGAGAACGATCCTCTTGTTCCGGATCTTGGTGGAGAAGAAGAAGAAGATGGGTTTTTCTCGTTCTCTTCCGTAGAAGAAAACGACGAGAGTCTGAATTGTTGCGTGCCAGTTTTCGATCCTTTCTCAGACATGGTGATTGATGATATCAACGGCTTTTGCTTAGTTCCCGATGAAGTCAATAACACTACTACTAATGGAGAAGAACTCGAGAGGGAAGTCATGGACGATAAAGGTTTTATTGGGTTCTTGCCGTTGAATATGGATCTTGAGGATCTCACTATGGATGTGGAGAGGTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGGAACCAAACGATATTGGAGTTATCAAAGAAGAGAATAACGTAGAGTTTGAGATTAATTGTAAGGATTTGAAGAGGGTTAAAGATGAGGAAGAAGAAGAAGCCAAGTGTGAAAATGGAGTATCAAAGGATAGTGATGGAGAAGCATCTAAGGATGAAGATGGAAAGACGAGTTTGTTTCTGAGATTAGATTATGAAGCTGTGATTAGTGCTTGGGATAATCATGGTTCGCCGTGGAAAACCGGAATCAAATCGGAGTGCTTGTTGGGAGGGAACACGTGTCCGTCACATGCTGTAGGTGGGTTCGATGAGTTGGTGTCGCCCGTCGGATCGGTGACACGCCAGCAAGTGAGAGACGGAGGAGGATCGGACGGGGAGAGAGAGGCGAGGGTTTTGAGGTACAAGGAAAAACGGAGGACGAGGTTGTTCTCAAAGAAAATAAGATATGAGGTTCGGAAACTTAACGCCGAGCAGAGACCTCGGATCAAAGGTCGGTTCGTGAAGAGAACGTCACTTTTTACGTGA
Protein Sequence
- >LR48_Vigan06g041400
MVVDVESRAVSVPGGKIVARACDACMERSRASWYCPAEDAFLCQSCDSSIHSANHLAKRHERVRLQSSSSTETADKTTSVWYEGFRRKARTPRNKGLAFEKLLQVEENDPLVPDLGGEEEEDGFFSFSSVEENDESLNCCVPVFDPFSDMVIDDINGFCLVPDEVNNTTTNGEELEREVMDDKGFIGFLPLNMDLEDLTMDVERLLEEEQLCLGFKEPNDIGVIKEENNVEFEINCKDLKRVKDEEEEEAKCENGVSKDSDGEASKDEDGKTSLFLRLDYEAVISAWDNHGSPWKTGIKSECLLGGNTCPSHAVGGFDELVSPVGSVTRQQVRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTSLFT