Information report for g01681
Gene Details
Functional Annotation
- Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5’] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
- homologous to the co-chaperon DNAJ protein from E coli
- Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.
- Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.
Homologous
- Actinidia chinensis: CEY00_Acc12681
- Brassica napus: BnaA10G0296300ZS, BnaC09G0616900ZS
- Brassica oleracea: Bo9g183540
- Brassica rapa: Bra009582
- Citrullus lanatus: Cla97C09G162100
- Cucumis melo: MELO3C024438
- Cucumis sativus: CsGy7G021580
- Glycine max: Glyma.07G015500
- Gossypium hirsutum: Gohir.A09G081200, Gohir.D03G057900, Gohir.D09G081300, Gohir.A02G117400
- Manihot esculenta: MANES_11G033700
- Populus trichocarpa: POPTR_003G048900v3
- Prunus persica: PRUPE_1G178600
- Rosa chinensis: RchiOBHm_Chr2g0140531
- Vitis vinifera: VIT_09s0002g03510
Sequences
gDNA Sequence
- >g01681
TCTTTGTTCGTTCAGGGGATTCAGATCACAAGTACACCGAGAATGGCGTCGTACAGGCCGCCGTATCCTCCTCAAAATCCTTTGGCCCCTCCGCCTCCTCCGCCGTCTTTACCCCCTCCTGTTCCTCCCCCACCACCGTCGCATCAACCGTACTCTTATCCTCCGCCGCCTCCCCCTCCGCATGCTTACTATCAGCAGTATCCTCAATTCAACCAGGTCCAAGCTCCTCCTCCTCCACCTCCACCTCCCTCAGCTCCTCCTCCCCTCGTACCCGATCCTCCTCGAAATCAAGGGCCCAATGACCGCGACAAAGGGGCCTCGAGGCGGGAGCGTGCTAAACCGGATCCATCGAAGCACCACAGGTCTCATCTTCCCCATACTAAGAAAATCGAGACCGAAGAAGAGAGGAGGCTTAGGAAGAAGGAGTTAGAGAAACAAAGGCAAGAAGAAAAACTTAGACAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTCAGTATTCTCACTTCTAGCAAACGACTAACTACATCGTGTTTACATATTAGACTGATAATCATCTTCTTGAAGGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATTAAGCGGGATAAAGATCAGTATGTTACTCTATTGCCAAAAAGATCTTCCAGTTTTATTTCTTGACTCCGTTTTACTTCTTAAATCTGATACAGCTATTTGATCCGACCACTAGATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTATACAAGTATGATCTCTCAATAAAGTTTGACTGTCTTTAATGCGAGAGACCTCATCTACTCGGATACTTACTAATGTAGCTCTTTTCTTTCAGCCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGCTGCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGCAAGACAGGTATCAATCTCACTTGTTGAAAGTTTCTTTTGTGATTTATAGCTTGTAAAAGCAGTATCCAATCTTATATGTTCTCCATGTGTAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCTTGCACAATCTTAACAATAGGTGTGTTATTTCTCAAATTTGTGTATTTCTAAACAAAGTGAAAAAGAAGGTCTAATGGTTTCTTTTTCTTTGGTCTCTAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGACGTTTTACCACTGTTGCCATATTTTGATAGGTTGATTGCTCCTTATTTTCCCTTTGAGACAATCTTAAATCTTAAATCCTGAATCAGGCAATTTTTTCTCATAATAGCCCTGCATGTAGACACAACAATGAAGCCCTTGAAAGCTGACACTTTACGGTATTATCTGTATGTTGGCTTTCTGTGAAGGATCTCCTGTGGTGGTAAACATGCGCTTATAGTTTTCCAGTTGCTATAGAATAATGTAATCAACCAGATGGGAAAGCCAGCCATTAACGTCTAACTATTCAACATTTAAGAGATGTTCGTCTTTATTTTTTCCCCTTTTCTCTGCTCCATGTCTTGTTCAAATGTTTCTTTGCAAGAGTTTTAGTGCATTGCCTTTTGGATGAAAAATCACTAATAGTTTTCAACTTGTAGCATATTATGCTAATACATTTGTCTCTTCCCTTCTTTTTTTCGATACAGGTACGATGAGCAGTTTGTGGTAGCGAATTTTGATAGTGCTCCTACAGCTGATTCTGAATTCTTTGGCAAGCTAGACCCATCAATTCGTGATGAACATGAGTCACGGGTGAGTTATGAGTTACTCATATCCGTGAGCATGGCCCAATTATCTCTGTTCTCTAGTATATGAATACTTTGTTCCTTAGAGGCAAGATGACTGTATAAACTATATCGCTTTTGTTACCGACAAAAGTGTACTCGAATGAGGATGGGATATATGAGATATGGGGCCTAATCTTAAATATGGTTGATTGCCTTATTTTCATATCGATGACGAGCTCTGACCTCATACTCACAGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAATCCAGAAAAATTTCTGGCGTACATGGTTCCTTCGTTGGATGAGGTAGTCATGCCTCTGTCTCCACGAACTGATCTCTGTTATAAACTTTTGTTAAATATGTATGTTGCTGTGCCAGTTGTCTAAGGATATGCATGATGAAGACGAAGATATCTCTTACACTTGGGTTCGCGAATACCACTGGGATGTATGTACCGTAGCCAATGTGGTTTGAGTGAAATTTTGATTGTTTTGAGTTGCAGATTGAAATAAATATGTTACCTGATGTTATAACAGGTACGTGGTGATGATGCAAATGATATTGGCACATACCTGGTATCGTTTGATGATGGGGCCGCTAGCTATCTGGTATGCCGTAGACAATACCTGCATCGCTTTTTGTATCTTTTTGTTACATATTTCAGTTGTGTATCTTTGTCTCTGTCTATAATACTTTGGGATGACCCACCCTTGAGAATTTGGCAGCCCCTACCCACGAAGCTGAACTTGAGGAAGAAAAGGCCCAGGGAAGGAAGATCTTCTGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTGACTGTAAGGCGAAGATCAACTGTATCAGTGATCGAATATAAAGATTCAGGGGTATAGTAAATCCATACATTTAGCCTTTAAAAAGAGTAATACAAGAAGTATGTGGAAAGTTCTTGTTCTCTTACCAATTCCTTTGGACTTTGGGGCTTTGGATGTAGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTCCAAGATGAGAAGATTAGAGGACGAAGAAGGCCTTGGTAGATCTTGGAAACATGAGCCGGAACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGAACGTTTTATGTACTTCAAACTATTCAATCGGTTTTCCAATGGTGTGTGAAGTATCCTGCAAGGCTACTTTTAGGCTAATTTAAAGCGTAATATGGCCTCGACCAGAGCCTCGTAATTTGGCAAGTAAAGAAATATTGATTTGGATAGCTGGCGAAGCTGAAAAACGATTTGACATGTACACGTCCATGGTTAAATGAATTGGCCATTTCGTT
CDS Sequence
- >RchiOBHm_Chr2g0168121
ATGGCGTCGTACAGGCCGCCGTATCCTCCTCAAAATCCTTTGGCCCCTCCGCCTCCTCCGCCGTCTTTACCCCCTCCTGTTCCTCCCCCACCACCGTCGCATCAACCGTACTCTTATCCTCCGCCGCCTCCCCCTCCGCATGCTTACTATCAGCAGTATCCTCAATTCAACCAGGTCCAAGCTCCTCCTCCTCCACCTCCACCTCCCTCAGCTCCTCCTCCCCTCGTACCCGATCCTCCTCGAAATCAAGGGCCCAATGACCGCGACAAAGGGGCCTCGAGGCGGGAGCGTGCTAAACCGGATCCATCGAAGCACCACAGGTCTCATCTTCCCCATACTAAGAAAATCGAGACCGAAGAAGAGAGGAGGCTTAGGAAGAAGGAGTTAGAGAAACAAAGGCAAGAAGAAAAACTTAGACAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATTAAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTATACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGCTGCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGCAAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGACGTTTTACCACTGTTGCCATATTTTGATAGGTACGATGAGCAGTTTGTGGTAGCGAATTTTGATAGTGCTCCTACAGCTGATTCTGAATTCTTTGGCAAGCTAGACCCATCAATTCGTGATGAACATGAGTCACGGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAATCCAGAAAAATTTCTGGCGTACATGGTTCCTTCGTTGGATGAGTTGTCTAAGGATATGCATGATGAAGACGAAGATATCTCTTACACTTGGGTTCGCGAATACCACTGGGATGTACGTGGTGATGATGCAAATGATATTGGCACATACCTGGTATCGTTTGATGATGGGGCCGCTAGCTATCTGCCCCTACCCACGAAGCTGAACTTGAGGAAGAAAAGGCCCAGGGAAGGAAGATCTTCTGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTGACTGTAAGGCGAAGATCAACTGTATCAGTGATCGAATATAAAGATTCAGGGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTCCAAGATGAGAAGATTAGAGGACGAAGAAGGCCTTGGTAGATCTTGGAAACATGAGCCGGAACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGA
Protein Sequence
- >RchiOBHm_Chr2g0168121
MASYRPPYPPQNPLAPPPPPPSLPPPVPPPPPSHQPYSYPPPPPPPHAYYQQYPQFNQVQAPPPPPPPPSAPPPLVPDPPRNQGPNDRDKGASRRERAKPDPSKHHRSHLPHTKKIETEEERRLRKKELEKQRQEEKLRQQMKNSHKSQMPKGHTEEKKPTPLLTTDRVENRLKKPTTFICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLLDLSVYNPPKFKAPLAPEDEELLRDDDAITPIKKDGIRRKERPTDKGVSWLVKTQYISSINNESARQSLTEKQAKELREMKGGINILHNLNNRERQIKDIEASFEACKSRPVHATNKSLQPVDVLPLLPYFDRYDEQFVVANFDSAPTADSEFFGKLDPSIRDEHESRAILKSYVVAGSDTANPEKFLAYMVPSLDELSKDMHDEDEDISYTWVREYHWDVRGDDANDIGTYLVSFDDGAASYLPLPTKLNLRKKRPREGRSSDEIEHFPVPSRVTVRRRSTVSVIEYKDSGVYSSRVGASSSKMRRLEDEEGLGRSWKHEPEQDANQYSDGNEDDYSE