Information report for g01263
Gene Details
Functional Annotation
- MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering.
- Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
- This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
Homologous
- Arabidopsis thaliana: AT1G77080.4, AT5G65060.1, AT5G65050.3, AT1G77080.2, AT1G77080.5, AT5G65060.2
- Brassica napus: BnaC03G0526000ZS
Sequences
gDNA Sequence
- >Bo9g012630
GAAAAAAAAAACCAAGAAAAAGGAATAAAAGAAGCAAAAACATAGAGCGTCTCCGGAGATTAGGATCAAATTAGGCCATAACCCTTATCGGAGATTGAAGCCATGGGAAGAAGAAAGATCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTCGTCGTCGTCTCTGCCTCCGGAAAACTCTTCGACTCATCCTCCGGTGACGAGTAAGCTACCTTCCTCTTCTGGGCCTCACTCGAGTTTTGTGCTAATCCTCTTTGTTTAGTTACTTTCTCCATATTAGAAACTTCAAATCTAGGGCTTTTTTTATTCCTTCAAATCAACAGAAATTTTCTCCTTGTTTACTGTATAAAGATATCAGATGCGTAAGCTTTAACCTAATTTAAGATTAAACATTGTGATGGCCAAGATATGTTCTTGGTGTTCGTTTCGTGTTTTTGTTTTTTTTGTTCGTTTCATTTTTTTCAAATCATTTTTGTTTTATTTTACCTTCATTTTTGACGAAATTTAATTTTGCATGTGATTCAAGACACTTTTCTACACGTGGTGATTCGTTCTTGATGTTGTTTAAGTAATATCTTTGTACTGCTAGTTCCATCTGTTGTTCACTTTGAAGCTTCGTTTTTTTCATATAAGAAACGATATGTAGATTGTTAAATTTTTAGATTTGGTAATTATATCCAATATTGCAATGCACTTCAGATAGGTTTGTTGAGAGATTATTTGGGGTCAGTTGTAACATTATTCGAGTATCTTTGGTTCAAATTGGTTGCCAAATTGTACAATATGTTGATCCAAAATGTATTGTAGATCTTTTATTTTGTAATTTCCCTCAAGGCCAAAGGTATATTAATAGTTGATTTCGATGGTTTATTGTAGTGCTGGGATAATTTTCCACATTGATAGTTGCCACACATTCTTCATTACTTATCTAATCGGATATCGATTTTAACCCTTTTAATCGTAAACTTTGTGTGTATATGACACCATATAAGATACATATGTCTTTCTGAGTAACTCTCTGTTGCTTTTTAAGATGTTGCAAACTTGCAATGAATTTAGTTTGGGTTTCTTTGCTAAAGAAACTATAACTAATTTTACTGCTACGATATATATGTCAGTGGCCTAGTGGGTTTATTAAGTAGAAACCGGTTGCTGATTTTACCACTAGACTACATCTAGTCATCTACAACCATATGTTCAATGAATTTAAAAGTTGTCTGTTATTTGTTGGGGATATTTCTAACCCCATGAACTTTTGACATTTTTCTGTCTAGTTGAAATCTCATCCACTTCTCTTTTAGAATATTTTGAATGCGACTGAATGTTTGTTTTTTCGAATAGACCTTAGATAAATCATCAATAAAATAAGTAGGAAATGGAAAGGTAACCCTTGTCACTATGTGTGTATATATAGCTCCTTCTCATTATCTGACGTTGACTCCATAAATGATTGATCATGAAAGCAAATATGTTGAATATGTAACTAACAATGAACAGACTATAGATAGAGTATTAGGAACCTTCTCTATCTGTCGCCATTTTACAATAGTCAAGCTCTAGTTGTAGCTATTTTTTTTGTTTAGTTCTTTTTATACCTTGACAAAGTGGCACTATACAATGTGTTTTGAGTTGAGATTAGTAGTCTTATGCGTCTTACTAATTGTTCATTTTTCTTCTTTTTGTGATTAATGTAAATTTACTAATTCACAACTTAAGATGTTACCAAGAAGTAAGAACGTGTAAATAATGAATTGAATTTTAAGCCAGCGTATTTTCATATTATAGCATTACTAGATCATGGACAACACAAATTAGGATAAGAGTCATGACCTTCCCGGAATGCTAAACCATTTTCTTGGCTTATCCTTTTTGGAGTATCACGACATCATTTAGCCAAGGTTTTGGTTTCAATATTCCGATTCCCTTGACTTTATGTGTTAAAAGCTTCAATACTAGGTTGGACTTGGGTTGAATAGTCAAAATATAAACTGATTTCATTATCTTCTTGAAATTTTCCCTTAAAATGAACATGAATTTCATCGAGATTTTGTCTTTTGGGAGGATGTGATTTACAATGTATCCAATTATACTTTTATTCATGCTATTTTTATAAAACTGATTTAGCTTTTGATAAGAAAAATAAGGTAGATTATTGAACTCATGGGGAGGAGTTAAATGTGTGCATTTAGTTTATAAAACCCTTTGAAGTCGAAACAAGGACTTCCATTGGCTAAGTTGACATATAACAGTATCTTCTAGATGAAATTGTAAAGTCAGATCTTAGAGCATCAGAGTTTCAGATTTACATTTGTAAATAATAATAATTACATATTTATGCATGAATATGAAAATGAAAGAGAGTATATATGATGAAGTGGAATAGTAAAATTAAAGCAGTAACTGCAAAAGTAGAGTAAACATACAAAAACTCACTATCAACTGTATACAGTATATATATACAAGATGCCTGGTTAAGTAAAGATGATTATCAAAAACTGTTGGTTAGTAACACAAATTGTTGCAAAATGTAACATATTATATAAGCTTTCTTTCACTCTGGTTCATTCTCTCTATAATGGTAACCATACAAAAACTAATAGTAACCTACAATGTTATTATTTTAAGCTATATACGCTATCAATTGTGTATATATATAGATGCCTGGTTAGGTAAAGATGATTATCAAAAACTGTTGGTTAGTAACACAAAATTACTGCAAAATGTAACATATTATATAAGTTTTCTTCCACTCTGGTTCATTCTCTCTATAATGGCCTCTATTGATGCTCAATCTGATTCTTAGTTTTGAAATTGTTTTGCATAAATTATTGTTCTAATGCATTTTTGTTTTATCTACAGCATTTCCAAGATCATTGATCGTTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGTAAGTTAGCTAAGAACATCATTACAATATTCTTCTGGATGCGGTTTTTGATGTTATGAAGGGAAAGAAGCGCTGGTCAAGCCGGAGATAACTCAATGTTTTGAACTTGTAACACCGAACTTAATTCTCTAGAGTTACAGTTATTGTGTTTACTGGAAAATACAAGAACTTCACAATCTTTAATTTCCGACCTTTCTTTTTATCCTTGTGCAGGATCTTGCAGAAAAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGGTTAGCAGTAAAACACCTTTTTCTCACCTCTTCTTCGGATAAAAAATTACTTTTTTTTTCTTTTGTCTACTTATGAATACAGCAAGCTTGAAGAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGACTGCTCTGTCCGTAAGTAGGGCTAGGAAGGTATATGTGCTAGCTGCTACTAAGTGATTCAATCAATTATTCCATAAAACCTTCGGTTTAGTTAGTTATCCAAGAACAGTCTTTTGACATAATTCTTAATGTCTTGTTGTAGGCAGAACTGATGATGGAGTATGTGAAGTCCCTTAAAGAAAAGGTTAGTATTTTGGTTTTTATTTGCTATCAAGGCCATATTCTAGATTATGATGATTCTTGAAATCTATTAACCTCGGAGTCTACAGATCACTAAACCTAGTTTAACTCTAGATATGTCTTTTGGCCTTGTCTTAATTAGTTCCTGATTAATTATTGGCTTCATTCGGATGAAACCCTAATGAGAACATAAAACAGTTTAAAATTCAACATTTCCCTCATGAAGTGTCGAATATGTATTGAGAAGAAAACCTGTTTGGAGATAGCTTTAGAACTTGTTTGAAACTAATGACCTAATTATGATCTTGTCCAAACAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGGTAATAAAGACCAGAATCTCTTATGCTTCTAGATGCTAATTAATCACTTTATACGTCCCCATTACAGAGAGATACACATATACACTTACATAAAAACTAGACTTAGATGGATGCTAGACAATTTAGTGGAACCCTATATCTTAAATATGTGATTAAAAAAAAATTGCTTTTATAATGTTTAGACAATGTCTCACCGATGAAAGATACTCAAACCCCGATATTTTTAATTTATGAAATTTGCAAAAAAAAAAAAAAAAAAGTTTCTATAGATTAATTTATTGTCAATGTTTAGTAGCTGTAGAAAAAAGAAGTTAAAGAAAGTTTCTTACAGATGGGGAAGAATACGTTGCTGGCAATAGAGGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGTTTTCCAGCTTAAACTCAACGCCTGATTCAGAATGAAGAAAACATATTTGTAAATTATAAAAAGCTGTATAATCTCAAACCTTTTATCTTCCTCTAGTGTGGAAATTAAGGTTAAAAAACTCGATAAAGTATGGATCGTTGTTGTACCTTCCTTCAAAGACAAGATCAGAGTTCGTGTGTTGTGTTTGAATGTACGGTTTGGATTTAAAGTT
CDS Sequence
- >HanXRQChr04g0126381
ATGGGAAGAAGAAAGATCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTCGTCGTCGTCTCTGCCTCCGGAAAACTCTTCGACTCATCCTCCGGTGACGACATTTCCAAGATCATTGATCGTTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAAAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAGAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGACTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTCCCTTAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGGGAAGAATACGTTGCTGGCAATAGAGGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAA
Protein Sequence
- >HanXRQChr04g0126381
MGRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLFDSSSGDDISKIIDRYEIQHADELKALDLAEKIQNYLPHKELLETVQSKLEEPNVDNVSVDSLISLEEQLETALSVSRARKAELMMEYVKSLKEKEMLLREENQVLASQMGKNTLLAIEDERGMLPESSSGNKIPETLPLLK